Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8064912.1

Orthogroup ID

OG0002123

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 571

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8064912.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

attgtttattttattatcatctcatgagaaccgtaatttgccttttcagctatttgtgattgagggggactatattcagctgcgtgaaggagctcaagagatgatagcagctacagccgctgttgccagagttgctgctgctgcagcagcatcatccccctactcttcatgtttgccttctgtggctgttactccagtggcacagactcaccgcttaaagaagatatcatctcttgattccaaaaatgtggttacttctactccaaatgcaaataatgctcacttgcagtctgtgaagcagaatcagcaattaaatggtgtctcttttggtgtttcgggaggtatgtcgaacgtaaaaattttgagcaaatccaaggacatgaatgggcctgaacctactcccagccagtcatctgtacttcttaatggtggaaatggagctcctctggacagatcaatggccaatggccggcattttgttgggaaacagcatggcaggtatgcctctaaacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

18.02

Weight (kDa)

9.86

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53620 AT5G53620 AT5G53620
fragaria_vesca	FvH4_7g32660 FvH4_7g32660 FvH4_7g32660 FvH4_7g32660
malus_domestica	MD01G1227300.v1.1 MD07G1297600.v1.1
prunus_persica	Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1
pyrus_communis	pycom01g23540 pycom07g27000
rosa_chinensis	RchiOBHm_Chr1g0382521 RchiOBHm_Chr1g0382561 RchiOBHm_Chr1g0382611 RchiOBHm_Chr1g0382631 RchiOBHm_Chr1g0382641
rosa_laevigata	RLG00000026170
rosa_multiflora	Rmu_co8064912.1_g000001 Rmu_sc0000110.1_g000056 Rmu_sc0006862.1_g000005 Rmu_sc0006862.1_g000008 Rmu_sc0006862.1_g000011 Rmu_sc0017237.1_g000002 Rmu_sc0017237.1_g000006
rosa_roxburghii	Rroxscaffold_1G00051710 Rroxscaffold_4G00277980 Rroxscaffold_4G00277990
rosa_rugosa	Rorug01G0435100 Rorug01G0435200 Rorug01G0435300 Rorug01G0435300
rosa_samantha	Rh1AG460200 Rh1BG416400 Rh1BG416500 Rh1BG416800 Rh1CG430200 Rh1DG448800 Rh1DG449000
rosa_wichuraiana	Rw1G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	487
AciI	CCGC	2 cut(s)	118, 212
AcoI	YGGCCR	2 cut(s)	460, 467
AcsI	RAATTY	1 cut(s)	358
AfaI	GTAC	1 cut(s)	418
AfiI	CCNNNNNNNGG	1 cut(s)	469
AluBI	AGCT	5 cut(s)	50, 80, 93, 111, 441
AluI	AGCT	5 cut(s)	50, 80, 93, 111, 441
Alw21I	GWGCWC	2 cut(s)	95, 443
Alw26I	GTCTC	1 cut(s)	326
AlwNI	CAGNNNCTG	1 cut(s)	120
AoxI	GGCC	3 cut(s)	387, 460, 467
ApeKI	GCWGC	7 cut(s)	80, 108, 135, 138, 141, 144, 147
ApoI	RAATTY	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	387
AsuHPI	GGTGA	1 cut(s)	201
BalI	TGGCCA	1 cut(s)	462
BanII	GRGCYC	2 cut(s)	95, 443
Bbv12I	GWGCWC	2 cut(s)	95, 443
BbvI	GCAGC	7 cut(s)	67, 120, 122, 125, 128, 156, 159
BcoDI	GTCTC	1 cut(s)	326
BfmI	CTRYAG	2 cut(s)	112, 142
BfuAI	ACCTGC	1 cut(s)	487
BisI	GCNGC	8 cut(s)	81, 109, 118, 136, 139, 142, 145, 148
BlsI	GCNGC	8 cut(s)	82, 110, 119, 137, 140, 143, 146, 149
BmgT120I	GGNCC	1 cut(s)	387
BmsI	GCATC	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	373
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
Bse118I	RCCGGY	1 cut(s)	469
Bse1I	ACTGG	2 cut(s)	195, 407
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseNI	ACTGG	2 cut(s)	195, 407
BseRI	GAGGAG	1 cut(s)	433
BseXI	GCAGC	7 cut(s)	67, 120, 122, 125, 128, 156, 159
BseYI	CCCAGC	1 cut(s)	402
BshFI	GGCC	3 cut(s)	389, 462, 469
BsiHKAI	GWGCWC	2 cut(s)	95, 443
BsiSI	CCGG	1 cut(s)	470
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	469
BsmAI	GTCTC	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	3 cut(s)	389, 462, 469
Bsp1286I	GDGCHC	2 cut(s)	95, 443
Bsp143I	GATC	1 cut(s)	453
BspACI	CCGC	2 cut(s)	118, 212
BspANI	GGCC	3 cut(s)	389, 462, 469
BspHI	TCATGA	1 cut(s)	23
BspMAI	CTGCAG	1 cut(s)	146
BspMI	ACCTGC	1 cut(s)	487
BsrFI	RCCGGY	1 cut(s)	469
BsrI	ACTGG	2 cut(s)	195, 407
BssAI	RCCGGY	1 cut(s)	469
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	1 cut(s)	453
BssT1I	CCWWGG	1 cut(s)	373
Bst4CI	ACNGT	1 cut(s)	33
Bst6I	CTCTTC	1 cut(s)	170
BstAPI	GCANNNNNTGC	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	471
BstF5I	GGATG	1 cut(s)	153
BstKTI	GATC	1 cut(s)	456
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	1 cut(s)	453
BstSFI	CTRYAG	2 cut(s)	112, 142
BstV1I	GCAGC	7 cut(s)	67, 120, 122, 125, 128, 156, 159
BstXI	CCANNNNNNTGG	1 cut(s)	248
BsuRI	GGCC	3 cut(s)	389, 462, 469
BtsCI	GGATG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	202
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	1 cut(s)	471
CaiI	CAGNNNCTG	1 cut(s)	120
CciI	TCATGA	1 cut(s)	23
Cfr10I	RCCGGY	1 cut(s)	469
Cfr13I	GGNCC	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	417
CviAII	CATG	4 cut(s)	24, 169, 380, 492
CviQI	GTAC	1 cut(s)	417
DpnI	GATC	1 cut(s)	455
DpnII	GATC	1 cut(s)	453
EaeI	YGGCCR	2 cut(s)	460, 467
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Ecl136II	GAGCTC	2 cut(s)	93, 441
Eco130I	CCWWGG	1 cut(s)	373
Eco24I	GRGCYC	2 cut(s)	95, 443
Eco32I	GATATC	1 cut(s)	226
Eco53kI	GAGCTC	2 cut(s)	93, 441
EcoICRI	GAGCTC	2 cut(s)	93, 441
EcoRV	GATATC	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	373
EcoT38I	GRGCYC	2 cut(s)	95, 443
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	4 cut(s)	27, 172, 383, 495
FaiI	YATR	7 cut(s)	25, 73, 170, 345, 381, 493, 502
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	4 cut(s)	23, 168, 379, 491
Fnu4HI	GCNGC	8 cut(s)	81, 109, 118, 136, 139, 142, 145, 148
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	2 cut(s)	95, 443
Fsp4HI	GCNGC	8 cut(s)	81, 109, 118, 136, 139, 142, 145, 148
GluI	GCNGC	8 cut(s)	81, 109, 118, 136, 139, 142, 145, 148
GsaI	CCCAGC	1 cut(s)	406
GsuI	CTGGAG	1 cut(s)	178
HaeIII	GGCC	3 cut(s)	389, 462, 469
HapII	CCGG	1 cut(s)	470
Hin1II	CATG	4 cut(s)	27, 172, 383, 495
HinfI	GANTC	3 cut(s)	206, 237, 302
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	1 cut(s)	201
Hpy188III	TCNNGA	5 cut(s)	24, 96, 234, 337, 447
HpyAV	CCTTC	2 cut(s)	81, 187
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	3 cut(s)	144, 270, 287
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	4 cut(s)	27, 172, 383, 495
KroI	GCCGGC	1 cut(s)	469
KroNI	GCCGGC	1 cut(s)	471
Kzo9I	GATC	1 cut(s)	453
LmnI	GCTCC	3 cut(s)	90, 438, 446
LpnPI	CCDG	8 cut(s)	140, 208, 403, 416, 420, 432, 482, 483
Lsp1109I	GCAGC	7 cut(s)	67, 120, 122, 125, 128, 156, 159
LweI	GCATC	1 cut(s)	159
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	2 cut(s)	188, 251
MalI	GATC	1 cut(s)	455
MboI	GATC	1 cut(s)	453
MboII	GAAGA	2 cut(s)	157, 233
MhlI	GDGCHC	2 cut(s)	95, 443
MlsI	TGGCCA	1 cut(s)	462
MluCI	AATT	3 cut(s)	35, 309, 358
MluNI	TGGCCA	1 cut(s)	462
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	3 cut(s)	56, 333, 454
Mox20I	TGGCCA	1 cut(s)	462
MroNI	GCCGGC	1 cut(s)	469
MscI	TGGCCA	1 cut(s)	462
MseI	TTAA	3 cut(s)	216, 312, 424
Msp20I	TGGCCA	1 cut(s)	462
MspA1I	CMGCKG	2 cut(s)	80, 120
MspI	CCGG	1 cut(s)	470
NaeI	GCCGGC	1 cut(s)	471
NdeII	GATC	1 cut(s)	453
NgoMIV	GCCGGC	1 cut(s)	469
NlaIII	CATG	4 cut(s)	27, 172, 383, 495
PagI	TCATGA	1 cut(s)	23
PdiI	GCCGGC	1 cut(s)	471
PfeI	GAWTC	2 cut(s)	237, 302
PkrI	GCNGC	8 cut(s)	82, 110, 119, 137, 140, 143, 146, 149
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
Psp124BI	GAGCTC	2 cut(s)	95, 443
PspFI	CCCAGC	1 cut(s)	402
PspPI	GGNCC	1 cut(s)	387
PstI	CTGCAG	1 cut(s)	146
PstNI	CAGNNNCTG	1 cut(s)	120
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
SacI	GAGCTC	2 cut(s)	95, 443
SaqAI	TTAA	3 cut(s)	216, 312, 424
SatI	GCNGC	8 cut(s)	81, 109, 118, 136, 139, 142, 145, 148
Sau3AI	GATC	1 cut(s)	453
Sau96I	GGNCC	1 cut(s)	387
SchI	GAGTC	1 cut(s)	200
SduI	GDGCHC	2 cut(s)	95, 443
SetI	ASST	9 cut(s)	52, 82, 95, 113, 344, 355, 398, 443, 501
SfaNI	GCATC	1 cut(s)	159
SfcI	CTRYAG	2 cut(s)	112, 142
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	3 cut(s)	35, 309, 358
SsiI	CCGC	2 cut(s)	118, 212
SstI	GAGCTC	2 cut(s)	95, 443
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	1 cut(s)	33
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	1 cut(s)	348
TasI	AATT	3 cut(s)	35, 309, 358
TatI	WGTACW	1 cut(s)	416
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	2 cut(s)	237, 302
Tru1I	TTAA	3 cut(s)	216, 312, 424
Tru9I	TTAA	3 cut(s)	216, 312, 424
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	7 cut(s)	80, 108, 135, 138, 141, 144, 147
TspDTI	ATGAA	2 cut(s)	157, 396
TspRI	CASTG	1 cut(s)	202
XapI	RAATTY	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.