Rmu_sc0017237.1_g000006

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017237.1
OG0002123
Physical Location & Seq
Forward (+)
20849 .. 21566
718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017237.1_g000006.1.cds

Sequence Viewer

Length: 216 bp
ctggggttccccattccatcccaccacagcttcctcaatcaagatagagagctgcatgctaccaagttagataatgaagcggcctgggccaaagagagccttctcagagaacagaacaaagaattagcaacttccagaagagagcgtgaccattcagaagctgaaagagcccagcatatacagcaattacatgatcttcaagaacatattcaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.39

Weight (kDa)

5.93

Isoelectric Point (pI)

58.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 80
AgsI TTSAA 2 cut(s) 200, 212
AjnI CCWGG 1 cut(s) 83
AluBI AGCT 3 cut(s) 30, 52, 161
AluI AGCT 3 cut(s) 30, 52, 161
AlwNI CAGNNNCTG 1 cut(s) 161
AoxI GGCC 2 cut(s) 81, 87
ApeKI GCWGC 1 cut(s) 52
Asp700I GAANNNNTTC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 87
BanII GRGCYC 1 cut(s) 172
BbvI GCAGC 1 cut(s) 39
BccI CCATC 1 cut(s) 25
BciT130I CCWGG 1 cut(s) 85
BisI GCNGC 2 cut(s) 53, 81
BlsI GCNGC 2 cut(s) 54, 82
Bme1390I CCNGG 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 1 cut(s) 8
BmrFI CCNGG 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 17
BseMII CTCAG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 39
BseYI CCCAGC 1 cut(s) 171
BshFI GGCC 2 cut(s) 83, 89
BsnI GGCC 2 cut(s) 83, 89
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 1 cut(s) 80
BspANI GGCC 2 cut(s) 83, 89
BspCNI CTCAG 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 8
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 1 cut(s) 17
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 3 cut(s) 86, 167, 181
BstNI CCWGG 1 cut(s) 85
BstNSI RCATGY 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 39
BsuRI GGCC 2 cut(s) 83, 89
BtsCI GGATG 1 cut(s) 17
Cac8I GCNNGC 1 cut(s) 57
CaiI CAGNNNCTG 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 87
CviAII CATG 2 cut(s) 56, 191
CviJI RGCY 7 cut(s) 30, 52, 83, 89, 99, 161, 170
CviKI_1 RGCY 7 cut(s) 30, 52, 83, 89, 99, 161, 170
DdeI CTNAG 1 cut(s) 104
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 83
EcoT38I GRGCYC 1 cut(s) 172
FaeI CATG 2 cut(s) 59, 194
FaiI YATR 5 cut(s) 57, 177, 179, 192, 207
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FatI CATG 2 cut(s) 55, 190
Fnu4HI GCNGC 2 cut(s) 53, 81
FokI GGATG 1 cut(s) 4
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 2 cut(s) 53, 81
GluI GCNGC 2 cut(s) 53, 81
GsaI CCCAGC 1 cut(s) 175
HaeIII GGCC 2 cut(s) 83, 89
Hin1II CATG 2 cut(s) 59, 194
Hpy188I TCNGA 2 cut(s) 107, 157
Hpy188III TCNNGA 3 cut(s) 41, 135, 200
HpyAV CCTTC 1 cut(s) 110
HpyCH4V TGCA 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 167, 181
HpyF3I CTNAG 1 cut(s) 104
Hsp92II CATG 2 cut(s) 59, 194
Kzo9I GATC 1 cut(s) 193
LpnPI CCDG 4 cut(s) 70, 97, 148, 185
Lsp1109I GCAGC 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 146
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 2 cut(s) 150, 188
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 2 cut(s) 122, 185
MnlI CCTC 1 cut(s) 44
MroXI GAANNNNTTC 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 85
MwoI GCNNNNNNNGC 3 cut(s) 86, 167, 181
NdeII GATC 1 cut(s) 193
NlaIII CATG 2 cut(s) 59, 194
NlaIV GGNNCC 1 cut(s) 8
NmuCI GTSAC 1 cut(s) 146
NspI RCATGY 1 cut(s) 59
PaeI GCATGC 1 cut(s) 59
PdmI GAANNNNTTC 1 cut(s) 207
PkrI GCNGC 2 cut(s) 54, 82
Psp6I CCWGG 1 cut(s) 83
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 8
PspPI GGNCC 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 161
SatI GCNGC 2 cut(s) 53, 81
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 87
ScrFI CCNGG 1 cut(s) 85
SduI GDGCHC 1 cut(s) 172
SetI ASST 3 cut(s) 32, 54, 163
SphI GCATGC 1 cut(s) 59
Sse9I AATT 2 cut(s) 122, 185
SsiI CCGC 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 83
TasI AATT 2 cut(s) 122, 185
TauI GCSGC 1 cut(s) 83
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 90
XceI RCATGY 1 cut(s) 59
XmnI GAANNNNTTC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.