Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002123

Physical Location & Seq

Genomic Coordinates Forward (+)

65781994 .. 65783720

Gene Structure 1727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG449000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGATAGCAGCTACAGCCGCTGTTGCCAGAGTTGCTGCTGCTGCAGCAGCATCATCCCCCTACTCTTCATGTTTGCCTTCTGTGGCTGTTACTCCAGTGGCACAGACTCACCGCTTAAAGAAGATATCATCTCTTGATTCCAAAAATGTGGTTACTTCTACTCCAAATGCAAATAATGCTCACTTGCAGTCTGTGAAGCAGAATCAGCAATTAAATGGTGTATCTTTTGGTGTTTCGGGAGGTATGTCGAACGTAAAAATTTTGAGCAAATCCAAGGACATGAATGGGCCTGAACCTACTCCCAGCCAGTCATCTGTACTTCTTAATGGTGGAAATGGAGCTCCTCTGGACAGATCAATGGCCAATGGCCGGCATTTTGTTGGGAAACAGCATGGCAGGATGACTAATTCTGCATTTACCTCCAGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

14.76

Weight (kDa)

11.06

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53620 AT5G53620 AT5G53620
fragaria_vesca	FvH4_7g32660 FvH4_7g32660 FvH4_7g32660 FvH4_7g32660
malus_domestica	MD01G1227300.v1.1 MD07G1297600.v1.1
prunus_persica	Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1
pyrus_communis	pycom01g23540 pycom07g27000
rosa_chinensis	RchiOBHm_Chr1g0382521 RchiOBHm_Chr1g0382561 RchiOBHm_Chr1g0382611 RchiOBHm_Chr1g0382631 RchiOBHm_Chr1g0382641
rosa_laevigata	RLG00000026170
rosa_multiflora	Rmu_co8064912.1_g000001 Rmu_sc0000110.1_g000056 Rmu_sc0006862.1_g000005 Rmu_sc0006862.1_g000008 Rmu_sc0006862.1_g000011 Rmu_sc0017237.1_g000002 Rmu_sc0017237.1_g000006
rosa_roxburghii	Rroxscaffold_1G00051710 Rroxscaffold_4G00277980 Rroxscaffold_4G00277990
rosa_rugosa	Rorug01G0435100 Rorug01G0435200 Rorug01G0435300 Rorug01G0435300
rosa_samantha	Rh1AG460200 Rh1BG416400 Rh1BG416500 Rh1BG416800 Rh1CG430200 Rh1DG448800 Rh1DG449000
rosa_wichuraiana	Rw1G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	18, 112
AcoI	YGGCCR	2 cut(s)	360, 367
AcsI	RAATTY	1 cut(s)	258
AfaI	GTAC	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	369
AluBI	AGCT	2 cut(s)	11, 341
AluI	AGCT	2 cut(s)	11, 341
Alw21I	GWGCWC	1 cut(s)	343
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	3 cut(s)	287, 360, 367
ApeKI	GCWGC	6 cut(s)	8, 35, 38, 41, 44, 47
ApoI	RAATTY	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	101
BalI	TGGCCA	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	343
Bbv12I	GWGCWC	1 cut(s)	343
BbvI	GCAGC	6 cut(s)	20, 22, 25, 28, 56, 59
BfmI	CTRYAG	2 cut(s)	12, 42
BisI	GCNGC	7 cut(s)	9, 18, 36, 39, 42, 45, 48
BlsI	GCNGC	7 cut(s)	10, 19, 37, 40, 43, 46, 49
BmgT120I	GGNCC	1 cut(s)	287
BmsI	GCATC	1 cut(s)	59
BpmI	CTGGAG	2 cut(s)	78, 406
BsaJI	CCNNGG	1 cut(s)	273
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse118I	RCCGGY	1 cut(s)	369
Bse1I	ACTGG	2 cut(s)	95, 307
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	2 cut(s)	53, 405
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseNI	ACTGG	2 cut(s)	95, 307
BseRI	GAGGAG	1 cut(s)	333
BseXI	GCAGC	6 cut(s)	20, 22, 25, 28, 56, 59
BseYI	CCCAGC	1 cut(s)	302
BshFI	GGCC	3 cut(s)	289, 362, 369
BsiHKAI	GWGCWC	1 cut(s)	343
BsiSI	CCGG	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	369
BsnI	GGCC	3 cut(s)	289, 362, 369
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp143I	GATC	1 cut(s)	353
BspACI	CCGC	2 cut(s)	18, 112
BspANI	GGCC	3 cut(s)	289, 362, 369
BspMAI	CTGCAG	1 cut(s)	46
BsrFI	RCCGGY	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	95, 307
BssAI	RCCGGY	1 cut(s)	369
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	1 cut(s)	353
BssT1I	CCWWGG	1 cut(s)	273
Bst6I	CTCTTC	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	371
BstF5I	GGATG	2 cut(s)	53, 405
BstKTI	GATC	1 cut(s)	356
BstMBI	GATC	1 cut(s)	353
BstMWI	GCNNNNNNNGC	9 cut(s)	14, 17, 23, 32, 41, 44, 47, 176, 205
BstSFI	CTRYAG	2 cut(s)	12, 42
BstV1I	GCAGC	6 cut(s)	20, 22, 25, 28, 56, 59
BstXI	CCANNNNNNTGG	1 cut(s)	148
BsuRI	GGCC	3 cut(s)	289, 362, 369
BtsCI	GGATG	2 cut(s)	53, 405
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	371
CaiI	CAGNNNCTG	1 cut(s)	20
Cfr10I	RCCGGY	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	317
CviAII	CATG	3 cut(s)	69, 280, 392
CviJI	RGCY	8 cut(s)	11, 17, 86, 289, 306, 341, 362, 369
CviKI_1	RGCY	8 cut(s)	11, 17, 86, 289, 306, 341, 362, 369
CviQI	GTAC	1 cut(s)	317
DpnI	GATC	1 cut(s)	355
DpnII	GATC	1 cut(s)	353
EaeI	YGGCCR	2 cut(s)	360, 367
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Ecl136II	GAGCTC	1 cut(s)	341
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	343
Eco32I	GATATC	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	341
EcoRV	GATATC	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	3 cut(s)	72, 283, 395
FaiI	YATR	4 cut(s)	70, 245, 281, 393
FatI	CATG	3 cut(s)	68, 279, 391
Fnu4HI	GCNGC	7 cut(s)	9, 18, 36, 39, 42, 45, 48
FokI	GGATG	2 cut(s)	40, 412
FriOI	GRGCYC	1 cut(s)	343
Fsp4HI	GCNGC	7 cut(s)	9, 18, 36, 39, 42, 45, 48
GluI	GCNGC	7 cut(s)	9, 18, 36, 39, 42, 45, 48
GsaI	CCCAGC	1 cut(s)	306
GsuI	CTGGAG	2 cut(s)	78, 406
HaeIII	GGCC	3 cut(s)	289, 362, 369
HapII	CCGG	1 cut(s)	370
Hin1II	CATG	3 cut(s)	72, 283, 395
HinfI	GANTC	3 cut(s)	106, 137, 202
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	1 cut(s)	101
Hpy188III	TCNNGA	4 cut(s)	134, 237, 347, 423
HpyAV	CCTTC	1 cut(s)	87
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	4 cut(s)	44, 170, 187, 413
HpyF10VI	GCNNNNNNNGC	9 cut(s)	14, 17, 23, 32, 41, 44, 47, 176, 205
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	72, 283, 395
KroI	GCCGGC	1 cut(s)	369
KroNI	GCCGGC	1 cut(s)	371
Kzo9I	GATC	1 cut(s)	353
LmnI	GCTCC	2 cut(s)	338, 346
LpnPI	CCDG	8 cut(s)	40, 108, 303, 316, 320, 332, 382, 383
Lsp1109I	GCAGC	6 cut(s)	20, 22, 25, 28, 56, 59
LweI	GCATC	1 cut(s)	59
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	2 cut(s)	88, 151
MalI	GATC	1 cut(s)	355
MboI	GATC	1 cut(s)	353
MboII	GAAGA	2 cut(s)	57, 133
MhlI	GDGCHC	1 cut(s)	343
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	3 cut(s)	209, 258, 406
MluNI	TGGCCA	1 cut(s)	362
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	3 cut(s)	233, 354, 430
Mox20I	TGGCCA	1 cut(s)	362
MroNI	GCCGGC	1 cut(s)	369
MscI	TGGCCA	1 cut(s)	362
MseI	TTAA	3 cut(s)	116, 212, 324
Msp20I	TGGCCA	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	370
MwoI	GCNNNNNNNGC	9 cut(s)	14, 17, 23, 32, 41, 44, 47, 176, 205
NaeI	GCCGGC	1 cut(s)	371
NdeII	GATC	1 cut(s)	353
NgoMIV	GCCGGC	1 cut(s)	369
NlaIII	CATG	3 cut(s)	72, 283, 395
PdiI	GCCGGC	1 cut(s)	371
PfeI	GAWTC	2 cut(s)	137, 202
PkrI	GCNGC	7 cut(s)	10, 19, 37, 40, 43, 46, 49
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp124BI	GAGCTC	1 cut(s)	343
PspFI	CCCAGC	1 cut(s)	302
PspPI	GGNCC	1 cut(s)	287
PstI	CTGCAG	1 cut(s)	46
PstNI	CAGNNNCTG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
SacI	GAGCTC	1 cut(s)	343
SaqAI	TTAA	3 cut(s)	116, 212, 324
SatI	GCNGC	7 cut(s)	9, 18, 36, 39, 42, 45, 48
Sau3AI	GATC	1 cut(s)	353
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	343
SetI	ASST	6 cut(s)	13, 244, 255, 298, 343, 422
SfaNI	GCATC	1 cut(s)	59
SfcI	CTRYAG	2 cut(s)	12, 42
Sse9I	AATT	3 cut(s)	209, 258, 406
SsiI	CCGC	2 cut(s)	18, 112
SstI	GAGCTC	1 cut(s)	343
StyI	CCWWGG	1 cut(s)	273
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	248
TasI	AATT	3 cut(s)	209, 258, 406
TatI	WGTACW	1 cut(s)	316
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	2 cut(s)	137, 202
Tru1I	TTAA	3 cut(s)	116, 212, 324
Tru9I	TTAA	3 cut(s)	116, 212, 324
TscAI	CASTG	1 cut(s)	102
TseI	GCWGC	6 cut(s)	8, 35, 38, 41, 44, 47
TspDTI	ATGAA	2 cut(s)	57, 296
TspRI	CASTG	1 cut(s)	102
XapI	RAATTY	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.