Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006862.1

Orthogroup ID

OG0002123

Physical Location & Seq

Genomic Coordinates Reverse (-)

50214 .. 51280

Gene Structure 1067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006862.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atgtcttcccaatttactgattctttaagattggattcccttgagaagagcagtgaaatcaaggcacatgagcagaatgttcagaccttgatcgatcatgggttggacggacaagttttaacggctgagaaaccaaattctgctaccaagtcctcaaaatctgacactccaatccattcagtcaatctcaatgaaattacaataaacaattcccctggtacaggtttgcctgagtcctttgtctcaactggacacaccaatgcaccatcagtgggtaggacttcggagaccgctcttctagatgaaaggtcattgttggcttgtatggttcggacaataccagctggtggtagaattaggatcagttcgacgctgccaaataggctcgggaagatgcttgcacctttacactggcatgattacaagaaaaagtatggaaagctagatgatttcgttgctgctcatactgaactatttgtgattgagggggactatattcagctgcgtgaaggagctcaagagatgatagcagctacagccgctgttgccagagttgctgctgctgcagcagcatcatccccctactcttcatgtttgccttctgtggctgttactccagtggcacagactcaccgcttaaagaagatatcatctcttgattccaaaaatgtggttacttctactccaaatgcaaataatgctcacttgcagtctgtgaagcagaatcagcaattaaatggtgtttcaggaggtatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

252

Amino Acids

26.88

Weight (kDa)

7.84

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53620 AT5G53620 AT5G53620
fragaria_vesca	FvH4_7g32660 FvH4_7g32660 FvH4_7g32660 FvH4_7g32660
malus_domestica	MD01G1227300.v1.1 MD07G1297600.v1.1
prunus_persica	Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1
pyrus_communis	pycom01g23540 pycom07g27000
rosa_chinensis	RchiOBHm_Chr1g0382521 RchiOBHm_Chr1g0382561 RchiOBHm_Chr1g0382611 RchiOBHm_Chr1g0382631 RchiOBHm_Chr1g0382641
rosa_laevigata	RLG00000026170
rosa_multiflora	Rmu_co8064912.1_g000001 Rmu_sc0000110.1_g000056 Rmu_sc0006862.1_g000005 Rmu_sc0006862.1_g000008 Rmu_sc0006862.1_g000011 Rmu_sc0017237.1_g000002 Rmu_sc0017237.1_g000006
rosa_roxburghii	Rroxscaffold_1G00051710 Rroxscaffold_4G00277980 Rroxscaffold_4G00277990
rosa_rugosa	Rorug01G0435100 Rorug01G0435200 Rorug01G0435300 Rorug01G0435300
rosa_samantha	Rh1AG460200 Rh1BG416400 Rh1BG416500 Rh1BG416800 Rh1CG430200 Rh1DG448800 Rh1DG449000
rosa_wichuraiana	Rw1G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	347
AccBSI	CCGCTC	1 cut(s)	293
AciI	CCGC	3 cut(s)	291, 540, 634
AclWI	GGATC	1 cut(s)	368
AcsI	RAATTY	1 cut(s)	136
AfaI	GTAC	1 cut(s)	220
AfiI	CCNNNNNNNGG	3 cut(s)	221, 272, 347
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	5 cut(s)	344, 442, 502, 515, 533
AluI	AGCT	5 cut(s)	344, 442, 502, 515, 533
Alw21I	GWGCWC	1 cut(s)	517
Alw26I	GTCTC	2 cut(s)	247, 281
AlwI	GGATC	1 cut(s)	368
AlwNI	CAGNNNCTG	1 cut(s)	542
Ama87I	CYCGRG	1 cut(s)	386
ApeKI	GCWGC	9 cut(s)	373, 458, 502, 530, 557, 560, 563, 566, 569
ApoI	RAATTY	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	623
AvaI	CYCGRG	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	517
Bbv12I	GWGCWC	1 cut(s)	517
BbvI	GCAGC	9 cut(s)	360, 445, 489, 542, 544, 547, 550, 578, 581
BccI	CCATC	1 cut(s)	274
BceAI	ACGGC	1 cut(s)	138
BciT130I	CCWGG	1 cut(s)	216
BcoDI	GTCTC	2 cut(s)	247, 281
BfaI	CTAG	2 cut(s)	299, 443
BfmI	CTRYAG	2 cut(s)	534, 564
BglI	GCCNNNNNGGC	1 cut(s)	382
Bme1390I	CCNGG	1 cut(s)	216
BmeT110I	CYCGRG	1 cut(s)	386
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	2 cut(s)	384, 581
BpmI	CTGGAG	1 cut(s)	600
BpuEI	CTTGAG	2 cut(s)	62, 501
Bsa29I	ATCGAT	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	667, 697
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 272, 347
Bse1I	ACTGG	3 cut(s)	253, 416, 617
BseBI	CCWGG	1 cut(s)	216
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	214
BseGI	GGATG	1 cut(s)	575
BseLI	CCNNNNNNNGG	3 cut(s)	221, 272, 347
BseMII	CTCAG	2 cut(s)	117, 222
BseNI	ACTGG	3 cut(s)	253, 416, 617
BseXI	GCAGC	9 cut(s)	360, 445, 489, 542, 544, 547, 550, 578, 581
BshVI	ATCGAT	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	517
BsiHKCI	CYCGRG	1 cut(s)	386
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	3 cut(s)	221, 272, 347
BsmAI	GTCTC	2 cut(s)	247, 281
BsmFI	GGGAC	1 cut(s)	503
Bso31I	GGTCTC	1 cut(s)	281
BsoBI	CYCGRG	1 cut(s)	386
Bsp1286I	GDGCHC	1 cut(s)	517
Bsp143I	GATC	3 cut(s)	90, 94, 360
BspACI	CCGC	3 cut(s)	291, 540, 634
BspCNI	CTCAG	2 cut(s)	118, 223
BspDI	ATCGAT	1 cut(s)	93
BspMAI	CTGCAG	1 cut(s)	568
BspPI	GGATC	1 cut(s)	368
BspQI	GCTCTTC	2 cut(s)	41, 300
BspTNI	GGTCTC	1 cut(s)	281
BsrBI	CCGCTC	1 cut(s)	293
BsrI	ACTGG	3 cut(s)	253, 416, 617
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	3 cut(s)	90, 94, 360
Bst2UI	CCWGG	1 cut(s)	216
Bst6I	CTCTTC	3 cut(s)	41, 300, 592
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	2 cut(s)	126, 231
BstENI	CCTNNNNNAGG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	575
BstKTI	GATC	3 cut(s)	93, 97, 363
BstMAI	GTCTC	2 cut(s)	247, 281
BstMBI	GATC	3 cut(s)	90, 94, 360
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	214
BstSFI	CTRYAG	2 cut(s)	534, 564
BstV1I	GCAGC	9 cut(s)	360, 445, 489, 542, 544, 547, 550, 578, 581
BstXI	CCANNNNNNTGG	1 cut(s)	670
Bsu15I	ATCGAT	1 cut(s)	93
BsuTUI	ATCGAT	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	575
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	4 cut(s)	58, 276, 409, 624
Cac8I	GCNNGC	1 cut(s)	399
CaiI	CAGNNNCTG	1 cut(s)	542
ClaI	ATCGAT	1 cut(s)	93
CseI	GACGC	1 cut(s)	379
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	4 cut(s)	68, 98, 416, 591
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	2 cut(s)	126, 231
DpnI	GATC	3 cut(s)	92, 96, 362
DpnII	GATC	3 cut(s)	90, 94, 360
Eam1104I	CTCTTC	3 cut(s)	41, 300, 592
EarI	CTCTTC	3 cut(s)	41, 300, 592
Ecl136II	GAGCTC	1 cut(s)	515
Eco24I	GRGCYC	1 cut(s)	517
Eco31I	GGTCTC	1 cut(s)	281
Eco32I	GATATC	1 cut(s)	648
Eco53kI	GAGCTC	1 cut(s)	515
Eco88I	CYCGRG	1 cut(s)	386
EcoICRI	GAGCTC	1 cut(s)	515
EcoNI	CCTNNNNNAGG	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	214
EcoRV	GATATC	1 cut(s)	648
EcoT38I	GRGCYC	1 cut(s)	517
FaeI	CATG	4 cut(s)	71, 101, 419, 594
FaiI	YATR	9 cut(s)	69, 99, 326, 417, 435, 465, 495, 592, 755
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	4 cut(s)	67, 97, 415, 590
FokI	GGATG	1 cut(s)	562
FriOI	GRGCYC	1 cut(s)	517
FspBI	CTAG	2 cut(s)	299, 443
GsuI	CTGGAG	1 cut(s)	600
HgaI	GACGC	1 cut(s)	379
Hin1II	CATG	4 cut(s)	71, 101, 419, 594
HinfI	GANTC	6 cut(s)	20, 35, 233, 628, 659, 724
HphI	GGTGA	1 cut(s)	623
Hpy188I	TCNGA	4 cut(s)	84, 163, 286, 333
Hpy188III	TCNNGA	5 cut(s)	299, 388, 518, 656, 747
Hpy99I	CGWCG	1 cut(s)	373
HpyAV	CCTTC	2 cut(s)	503, 609
HpyCH4V	TGCA	5 cut(s)	263, 401, 566, 692, 709
HpyF3I	CTNAG	2 cut(s)	126, 231
Hsp92II	CATG	4 cut(s)	71, 101, 419, 594
Kzo9I	GATC	3 cut(s)	90, 94, 360
LguI	GCTCTTC	2 cut(s)	41, 300
LmnI	GCTCC	1 cut(s)	512
Lsp1109I	GCAGC	9 cut(s)	360, 445, 489, 542, 544, 547, 550, 578, 581
LweI	GCATC	2 cut(s)	384, 581
MaeI	CTAG	2 cut(s)	299, 443
MaeIII	GTNAC	2 cut(s)	610, 673
MalI	GATC	3 cut(s)	92, 96, 362
MbiI	CCGCTC	1 cut(s)	293
MboI	GATC	3 cut(s)	90, 94, 360
MboII	GAAGA	5 cut(s)	58, 287, 403, 579, 655
MhlI	GDGCHC	1 cut(s)	517
MluCI	AATT	6 cut(s)	11, 136, 195, 208, 354, 731
MlyI	GAGTC	2 cut(s)	242, 622
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	3 cut(s)	163, 478, 743
MseI	TTAA	4 cut(s)	26, 119, 638, 734
MslI	CAYNNNNRTG	2 cut(s)	258, 414
MspA1I	CMGCKG	3 cut(s)	344, 502, 542
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
NdeII	GATC	3 cut(s)	90, 94, 360
NlaIII	CATG	4 cut(s)	71, 101, 419, 594
PciSI	GCTCTTC	2 cut(s)	41, 300
PfeI	GAWTC	4 cut(s)	20, 35, 659, 724
PflMI	CCANNNNNTGG	1 cut(s)	347
PleI	GAGTC	2 cut(s)	241, 622
PpsI	GAGTC	2 cut(s)	241, 622
Psp124BI	GAGCTC	1 cut(s)	517
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PstI	CTGCAG	1 cut(s)	568
PstNI	CAGNNNCTG	1 cut(s)	542
PvuII	CAGCTG	2 cut(s)	344, 502
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
RseI	CAYNNNNRTG	2 cut(s)	258, 414
SacI	GAGCTC	1 cut(s)	517
SapI	GCTCTTC	2 cut(s)	41, 300
SaqAI	TTAA	4 cut(s)	26, 119, 638, 734
Sau3AI	GATC	3 cut(s)	90, 94, 360
SchI	GAGTC	2 cut(s)	242, 622
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	517
SfaNI	GCATC	2 cut(s)	384, 581
SfcI	CTRYAG	2 cut(s)	534, 564
SmiMI	CAYNNNNRTG	2 cut(s)	258, 414
SmlI	CTYRAG	2 cut(s)	41, 516
SmoI	CTYRAG	2 cut(s)	41, 516
Sse9I	AATT	6 cut(s)	11, 136, 195, 208, 354, 731
SsiI	CCGC	3 cut(s)	291, 540, 634
SspMI	CTAG	2 cut(s)	299, 443
SstI	GAGCTC	1 cut(s)	517
StyD4I	CCNGG	1 cut(s)	214
TaqI	TCGA	2 cut(s)	93, 368
TasI	AATT	6 cut(s)	11, 136, 195, 208, 354, 731
TauI	GCSGC	1 cut(s)	542
TfiI	GAWTC	4 cut(s)	20, 35, 659, 724
Tru1I	TTAA	4 cut(s)	26, 119, 638, 734
Tru9I	TTAA	4 cut(s)	26, 119, 638, 734
TscAI	CASTG	4 cut(s)	58, 276, 416, 624
TseI	GCWGC	9 cut(s)	373, 458, 502, 530, 557, 560, 563, 566, 569
TspDTI	ATGAA	3 cut(s)	207, 318, 579
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	4 cut(s)	58, 276, 416, 624
Van91I	CCANNNNNTGG	1 cut(s)	347
XagI	CCTNNNNNAGG	1 cut(s)	219
XapI	RAATTY	1 cut(s)	136
XbaI	TCTAGA	1 cut(s)	298
XspI	CTAG	2 cut(s)	299, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.