isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 693, 1395 |
| AarI | CACCTGC | 1 cut(s) | 1907 |
| AatII | GACGTC | 1 cut(s) | 862 |
| Acc36I | ACCTGC | 5 cut(s) | 618, 825, 1282, 1780, 1907 |
| Acc65I | GGTACC | 1 cut(s) | 1213 |
| AccB1I | GGYRCC | 4 cut(s) | 1213, 1465, 1639, 2556 |
| AccBSI | CCGCTC | 1 cut(s) | 2208 |
| AccII | CGCG | 3 cut(s) | 22, 24, 72 |
| AclWI | GGATC | 2 cut(s) | 734, 1364 |
| AcoI | YGGCCR | 2 cut(s) | 12, 2467 |
| AcsI | RAATTY | 5 cut(s) | 955, 1048, 1575, 1926, 2689 |
| AcuI | CTGAAG | 3 cut(s) | 377, 1737, 1827 |
| AcyI | GRCGYC | 1 cut(s) | 859 |
| AfaI | GTAC | 5 cut(s) | 795, 876, 1215, 2391, 2443 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 91, 723, 1079, 1919, 1983, 2399, 2590 |
| AflIII | ACRYGT | 3 cut(s) | 370, 1234, 2624 |
| AgeI | ACCGGT | 1 cut(s) | 2583 |
| AhlI | ACTAGT | 1 cut(s) | 1790 |
| AjnI | CCWGG | 3 cut(s) | 497, 1165, 2299 |
| Alw21I | GWGCWC | 1 cut(s) | 2480 |
| Alw26I | GTCTC | 5 cut(s) | 82, 850, 1290, 1549, 2312 |
| AlwI | GGATC | 2 cut(s) | 734, 1364 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2114 |
| Ama87I | CYCGRG | 1 cut(s) | 1514 |
| AoxI | GGCC | 8 cut(s) | 12, 93, 136, 495, 714, 1031, 2372, 2467 |
| ApaI | GGGCCC | 1 cut(s) | 1035 |
| ApoI | RAATTY | 5 cut(s) | 955, 1048, 1575, 1926, 2689 |
| AscI | GGCGCGCC | 1 cut(s) | 70 |
| AsiGI | ACCGGT | 1 cut(s) | 2583 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 513, 684, 1852 |
| Asp718I | GGTACC | 1 cut(s) | 1213 |
| AspLEI | GCGC | 5 cut(s) | 22, 24, 72, 74, 2089 |
| AspS9I | GGNCC | 6 cut(s) | 94, 715, 1031, 1032, 1225, 2581 |
| AsuC2I | CCSGG | 2 cut(s) | 656, 1498 |
| AsuHPI | GGTGA | 3 cut(s) | 2027, 2195, 2651 |
| AvaI | CYCGRG | 1 cut(s) | 1514 |
| AvaII | GGWCC | 2 cut(s) | 1225, 2581 |
| BaeGI | GKGCMC | 2 cut(s) | 1035, 1468 |
| BanI | GGYRCC | 4 cut(s) | 1213, 1465, 1639, 2556 |
| BanII | GRGCYC | 2 cut(s) | 1035, 2480 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 867, 899 |
| BauI | CACGAG | 1 cut(s) | 734 |
| BbsI | GAAGAC | 1 cut(s) | 516 |
| Bbv12I | GWGCWC | 1 cut(s) | 2480 |
| BccI | CCATC | 8 cut(s) | 93, 206, 844, 1138, 1324, 1363, 1676, 2670 |
| BceAI | ACGGC | 2 cut(s) | 59, 2629 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1091, 1125 |
| BciT130I | CCWGG | 3 cut(s) | 499, 1167, 2301 |
| BclI | TGATCA | 2 cut(s) | 1558, 1669 |
| BcnI | CCSGG | 2 cut(s) | 656, 1498 |
| BcoDI | GTCTC | 5 cut(s) | 82, 850, 1290, 1549, 2312 |
| BcuI | ACTAGT | 1 cut(s) | 1790 |
| BfaI | CTAG | 7 cut(s) | 134, 261, 482, 1001, 1791, 2031, 2370 |
| BfmI | CTRYAG | 3 cut(s) | 1698, 2106, 2136 |
| BfuAI | ACCTGC | 5 cut(s) | 618, 825, 1282, 1780, 1907 |
| BglII | AGATCT | 1 cut(s) | 320 |
| BlpI | GCTNAGC | 1 cut(s) | 2474 |
| Bme1390I | CCNGG | 5 cut(s) | 499, 656, 1167, 1498, 2301 |
| Bme18I | GGWCC | 2 cut(s) | 1225, 2581 |
| BmeT110I | CYCGRG | 1 cut(s) | 1514 |
| BmgT120I | GGNCC | 6 cut(s) | 94, 715, 1031, 1032, 1225, 2581 |
| BmrFI | CCNGG | 5 cut(s) | 499, 656, 1167, 1498, 2301 |
| BpiI | GAAGAC | 1 cut(s) | 516 |
| BpmI | CTGGAG | 2 cut(s) | 2172, 2322 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2452 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2474 |
| BpuEI | CTTGAG | 4 cut(s) | 660, 911, 1637, 2194 |
| BpuMI | CCSGG | 2 cut(s) | 656, 1498 |
| BsaHI | GRCGYC | 1 cut(s) | 859 |
| BsaI | GGTCTC | 2 cut(s) | 1549, 2312 |
| BsaJI | CCNNGG | 5 cut(s) | 498, 1165, 1459, 1497, 1635 |
| BsaWI | WCCGGW | 2 cut(s) | 2570, 2583 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 91, 723, 1079, 1919, 1983, 2399, 2590 |
| Bse118I | RCCGGY | 2 cut(s) | 2469, 2583 |
| Bse1I | ACTGG | 5 cut(s) | 179, 1084, 1988, 2189, 2380 |
| Bse3DI | GCAATG | 1 cut(s) | 312 |
| BseBI | CCWGG | 3 cut(s) | 499, 1167, 2301 |
| BseDI | CCNNGG | 5 cut(s) | 498, 1165, 1459, 1497, 1635 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 91, 723, 1079, 1919, 1983, 2399, 2590 |
| BseMI | GCAATG | 1 cut(s) | 312 |
| BseMII | CTCAG | 6 cut(s) | 315, 837, 1109, 1311, 2465, 2466 |
| BseNI | ACTGG | 5 cut(s) | 179, 1084, 1988, 2189, 2380 |
| BsePI | GCGCGC | 2 cut(s) | 20, 70 |
| BseRI | GAGGAG | 1 cut(s) | 128 |
| BseSI | GKGCMC | 2 cut(s) | 1035, 1468 |
| BseX3I | CGGCCG | 1 cut(s) | 12 |
| BseYI | CCCAGC | 2 cut(s) | 1112, 1841 |
| BsgI | GTGCAG | 1 cut(s) | 1815 |
| Bsh1236I | CGCG | 3 cut(s) | 22, 24, 72 |
| Bsh1285I | CGRYCG | 1 cut(s) | 15 |
| BshFI | GGCC | 8 cut(s) | 14, 95, 138, 497, 716, 1033, 2374, 2469 |
| BshNI | GGYRCC | 4 cut(s) | 1213, 1465, 1639, 2556 |
| BshTI | ACCGGT | 1 cut(s) | 2583 |
| BsiEI | CGRYCG | 1 cut(s) | 15 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2480 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1514 |
| BsiSI | CCGG | 6 cut(s) | 655, 1497, 1913, 2470, 2571, 2584 |
| BslFI | GGGAC | 2 cut(s) | 934, 1211 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 91, 723, 1079, 1919, 1983, 2399, 2590 |
| BsmAI | GTCTC | 5 cut(s) | 82, 850, 1290, 1549, 2312 |
| BsmBI | CGTCTC | 3 cut(s) | 82, 850, 1290 |
| BsmFI | GGGAC | 2 cut(s) | 934, 1211 |
| BsnI | GGCC | 8 cut(s) | 14, 95, 138, 497, 716, 1033, 2374, 2469 |
| Bso31I | GGTCTC | 2 cut(s) | 1549, 2312 |
| BsoBI | CYCGRG | 1 cut(s) | 1514 |
| Bsp120I | GGGCCC | 1 cut(s) | 1031 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1035, 1468, 2480 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2474 |
| BspANI | GGCC | 8 cut(s) | 14, 95, 138, 497, 716, 1033, 2374, 2469 |
| BspCNI | CTCAG | 6 cut(s) | 316, 838, 1108, 1312, 2465, 2466 |
| BspFNI | CGCG | 3 cut(s) | 22, 24, 72 |
| BspHI | TCATGA | 2 cut(s) | 226, 406 |
| BspMAI | CTGCAG | 2 cut(s) | 1702, 2140 |
| BspMI | ACCTGC | 5 cut(s) | 618, 825, 1282, 1780, 1907 |
| BspPI | GGATC | 2 cut(s) | 734, 1364 |
| BspT107I | GGYRCC | 4 cut(s) | 1213, 1465, 1639, 2556 |
| BspTNI | GGTCTC | 2 cut(s) | 1549, 2312 |
| BsrBI | CCGCTC | 1 cut(s) | 2208 |
| BsrDI | GCAATG | 1 cut(s) | 312 |
| BsrFI | RCCGGY | 2 cut(s) | 2469, 2583 |
| BsrI | ACTGG | 5 cut(s) | 179, 1084, 1988, 2189, 2380 |
| BssAI | RCCGGY | 2 cut(s) | 2469, 2583 |
| BssECI | CCNNGG | 5 cut(s) | 498, 1165, 1459, 1497, 1635 |
| BssHII | GCGCGC | 2 cut(s) | 20, 70 |
| BssNI | GRCGYC | 1 cut(s) | 859 |
| BssSI | CACGAG | 1 cut(s) | 734 |
| BssT1I | CCWWGG | 2 cut(s) | 1459, 1635 |
| Bst2BI | CACGAG | 1 cut(s) | 734 |
| Bst2UI | CCWGG | 3 cut(s) | 499, 1167, 2301 |
| Bst4CI | ACNGT | 7 cut(s) | 705, 874, 1296, 1628, 1825, 2039, 2758 |
| Bst6I | CTCTTC | 4 cut(s) | 166, 1431, 2164, 2530 |
| BstACI | GRCGYC | 1 cut(s) | 859 |
| BstDEI | CTNAG | 6 cut(s) | 324, 846, 1095, 1320, 2452, 2474 |
| BstFNI | CGCG | 3 cut(s) | 22, 24, 72 |
| BstHHI | GCGC | 5 cut(s) | 22, 24, 72, 74, 2089 |
| BstMAI | GTCTC | 5 cut(s) | 82, 850, 1290, 1549, 2312 |
| BstMCI | CGRYCG | 1 cut(s) | 15 |
| BstNI | CCWGG | 3 cut(s) | 499, 1167, 2301 |
| BstNSI | RCATGY | 5 cut(s) | 374, 473, 1238, 1832, 2628 |
| BstSCI | CCNGG | 5 cut(s) | 497, 654, 1165, 1496, 2299 |
| BstSFI | CTRYAG | 3 cut(s) | 1698, 2106, 2136 |
| BstSLI | GKGCMC | 2 cut(s) | 1035, 1468 |
| BstUI | CGCG | 3 cut(s) | 22, 24, 72 |
| BstV2I | GAAGAC | 1 cut(s) | 516 |
| BstX2I | RGATCY | 1 cut(s) | 320 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1112 |
| BstYI | RGATCY | 1 cut(s) | 320 |
| BstZI | CGGCCG | 1 cut(s) | 12 |
| BsuRI | GGCC | 8 cut(s) | 14, 95, 138, 497, 716, 1033, 2374, 2469 |
| BtsIMutI | CAGTG | 4 cut(s) | 1301, 1633, 1981, 2196 |
| BveI | ACCTGC | 5 cut(s) | 618, 825, 1282, 1780, 1907 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2114 |
| CciI | TCATGA | 2 cut(s) | 226, 406 |
| CciNI | GCGGCCGC | 1 cut(s) | 12 |
| CfoI | GCGC | 5 cut(s) | 22, 24, 72, 74, 2089 |
| Cfr10I | RCCGGY | 2 cut(s) | 2469, 2583 |
| Cfr13I | GGNCC | 6 cut(s) | 94, 715, 1031, 1032, 1225, 2581 |
| CseI | GACGC | 1 cut(s) | 1951 |
| Csp6I | GTAC | 5 cut(s) | 794, 875, 1214, 2390, 2442 |
| CspAI | ACCGGT | 1 cut(s) | 2583 |
| CviQI | GTAC | 5 cut(s) | 794, 875, 1214, 2390, 2442 |
| DdeI | CTNAG | 6 cut(s) | 324, 846, 1095, 1320, 2452, 2474 |
| DraI | TTTAAA | 1 cut(s) | 1443 |
| EaeI | YGGCCR | 2 cut(s) | 12, 2467 |
| EagI | CGGCCG | 1 cut(s) | 12 |
| Eam1104I | CTCTTC | 4 cut(s) | 166, 1431, 2164, 2530 |
| EarI | CTCTTC | 4 cut(s) | 166, 1431, 2164, 2530 |
| EciI | GGCGGA | 1 cut(s) | 39 |
| Ecl136II | GAGCTC | 1 cut(s) | 2478 |
| EclXI | CGGCCG | 1 cut(s) | 12 |
| Eco130I | CCWWGG | 2 cut(s) | 1459, 1635 |
| Eco24I | GRGCYC | 2 cut(s) | 1035, 2480 |
| Eco31I | GGTCTC | 2 cut(s) | 1549, 2312 |
| Eco32I | GATATC | 2 cut(s) | 1335, 2220 |
| Eco47I | GGWCC | 2 cut(s) | 1225, 2581 |
| Eco52I | CGGCCG | 1 cut(s) | 12 |
| Eco53kI | GAGCTC | 1 cut(s) | 2478 |
| Eco57I | CTGAAG | 3 cut(s) | 377, 1737, 1827 |
| Eco88I | CYCGRG | 1 cut(s) | 1514 |
| EcoICRI | GAGCTC | 1 cut(s) | 2478 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1031, 1032 |
| EcoRI | GAATTC | 2 cut(s) | 1926, 2689 |
| EcoRII | CCWGG | 3 cut(s) | 497, 1165, 2299 |
| EcoRV | GATATC | 2 cut(s) | 1335, 2220 |
| EcoT14I | CCWWGG | 2 cut(s) | 1459, 1635 |
| EcoT22I | ATGCAT | 4 cut(s) | 870, 944, 970, 1203 |
| EcoT38I | GRGCYC | 2 cut(s) | 1035, 2480 |
| ErhI | CCWWGG | 2 cut(s) | 1459, 1635 |
| Esp3I | CGTCTC | 3 cut(s) | 82, 850, 1290 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 498, 530, 501, 533, 672, 704 |
| FaqI | GGGAC | 2 cut(s) | 934, 1211 |
| FauI | CCCGC | 3 cut(s) | 65, 237, 779 |
| FauNDI | CATATG | 2 cut(s) | 285, 864 |
| FbaI | TGATCA | 2 cut(s) | 1558, 1669 |
| FriOI | GRGCYC | 2 cut(s) | 1035, 2480 |
| FspBI | CTAG | 7 cut(s) | 134, 261, 482, 1001, 1791, 2031, 2370 |
| GlaI | GCGC | 5 cut(s) | 21, 23, 71, 73, 2088 |
| GsaI | CCCAGC | 2 cut(s) | 1116, 1845 |
| GsuI | CTGGAG | 2 cut(s) | 2172, 2322 |
| HaeIII | GGCC | 8 cut(s) | 14, 95, 138, 497, 716, 1033, 2374, 2469 |
| HapII | CCGG | 6 cut(s) | 655, 1497, 1913, 2470, 2571, 2584 |
| HgaI | GACGC | 1 cut(s) | 1951 |
| HhaI | GCGC | 5 cut(s) | 22, 24, 72, 74, 2089 |
| Hin1I | GRCGYC | 1 cut(s) | 859 |
| Hin6I | GCGC | 5 cut(s) | 20, 22, 70, 72, 2087 |
| HinP1I | GCGC | 5 cut(s) | 20, 22, 70, 72, 2087 |
| HincII | GTYRAC | 2 cut(s) | 764, 1821 |
| HindII | GTYRAC | 2 cut(s) | 764, 1821 |
| HindIII | AAGCTT | 5 cut(s) | 389, 720, 2012, 2287, 2741 |
| HpaII | CCGG | 6 cut(s) | 655, 1497, 1913, 2470, 2571, 2584 |
| HphI | GGTGA | 3 cut(s) | 2027, 2195, 2651 |
| Hpy166II | GTNNAC | 5 cut(s) | 190, 764, 1821, 2581, 2599 |
| Hpy8I | GTNNAC | 5 cut(s) | 190, 764, 1821, 2581, 2599 |
| Hpy99I | CGWCG | 1 cut(s) | 1945 |
| HpyAV | CCTTC | 6 cut(s) | 524, 546, 1083, 1161, 1761, 2181 |
| HpyCH4III | ACNGT | 7 cut(s) | 705, 874, 1296, 1628, 1825, 2039, 2758 |
| HpyCH4IV | ACGT | 5 cut(s) | 559, 792, 859, 2595, 2748 |
| HpyF3I | CTNAG | 6 cut(s) | 324, 846, 1095, 1320, 2452, 2474 |
| HpySE526I | ACGT | 5 cut(s) | 559, 792, 859, 2595, 2748 |
| Hsp92I | GRCGYC | 1 cut(s) | 859 |
| HspAI | GCGC | 5 cut(s) | 20, 22, 70, 72, 2087 |
| KpnI | GGTACC | 1 cut(s) | 1217 |
| KroI | GCCGGC | 1 cut(s) | 2469 |
| KroNI | GCCGGC | 1 cut(s) | 2471 |
| Ksp22I | TGATCA | 2 cut(s) | 1558, 1669 |
| LmnI | GCTCC | 5 cut(s) | 397, 415, 1318, 2084, 2411 |
| MaeI | CTAG | 7 cut(s) | 134, 261, 482, 1001, 1791, 2031, 2370 |
| MaeII | ACGT | 5 cut(s) | 559, 792, 859, 2595, 2748 |
| MaeIII | GTNAC | 5 cut(s) | 560, 1174, 2033, 2182, 2752 |
| MbiI | CCGCTC | 1 cut(s) | 2208 |
| MfeI | CAATTG | 1 cut(s) | 1521 |
| MflI | RGATCY | 1 cut(s) | 320 |
| MhlI | GDGCHC | 3 cut(s) | 1035, 1468, 2480 |
| MlyI | GAGTC | 2 cut(s) | 1526, 2194 |
| MmeI | TCCRAC | 3 cut(s) | 99, 105, 1315 |
| Mph1103I | ATGCAT | 4 cut(s) | 870, 944, 970, 1203 |
| MroNI | GCCGGC | 1 cut(s) | 2469 |
| MroXI | GAANNNNTTC | 3 cut(s) | 513, 684, 1852 |
| MslI | CAYNNNNRTG | 5 cut(s) | 38, 375, 734, 1833, 1986 |
| MspA1I | CMGCKG | 3 cut(s) | 17, 244, 2111 |
| MspI | CCGG | 6 cut(s) | 655, 1497, 1913, 2470, 2571, 2584 |
| MspR9I | CCNGG | 5 cut(s) | 499, 656, 1167, 1498, 2301 |
| MunI | CAATTG | 1 cut(s) | 1521 |
| MvaI | CCWGG | 3 cut(s) | 499, 1167, 2301 |
| MvnI | CGCG | 3 cut(s) | 22, 24, 72 |
| NaeI | GCCGGC | 1 cut(s) | 2471 |
| NciI | CCSGG | 2 cut(s) | 656, 1498 |
| NdeI | CATATG | 2 cut(s) | 285, 864 |
| NgoMIV | GCCGGC | 1 cut(s) | 2469 |
| NmuCI | GTSAC | 4 cut(s) | 560, 1174, 2033, 2752 |
| NotI | GCGGCCGC | 1 cut(s) | 12 |
| NsiI | ATGCAT | 4 cut(s) | 870, 944, 970, 1203 |
| NspI | RCATGY | 5 cut(s) | 374, 473, 1238, 1832, 2628 |
| PaeI | GCATGC | 2 cut(s) | 473, 1832 |
| PaeR7I | CTCGAG | 1 cut(s) | 1514 |
| PagI | TCATGA | 2 cut(s) | 226, 406 |
| PalAI | GGCGCGCC | 1 cut(s) | 70 |
| PaqCI | CACCTGC | 1 cut(s) | 1907 |
| PauI | GCGCGC | 2 cut(s) | 20, 70 |
| PciI | ACATGT | 3 cut(s) | 370, 1234, 2624 |
| PdiI | GCCGGC | 1 cut(s) | 2471 |
| PdmI | GAANNNNTTC | 3 cut(s) | 513, 684, 1852 |
| PfeI | GAWTC | 8 cut(s) | 935, 1403, 1475, 1610, 2266, 2342, 2656, 2731 |
| PfoI | TCCNGGA | 2 cut(s) | 654, 2299 |
| PinAI | ACCGGT | 1 cut(s) | 2583 |
| PleI | GAGTC | 2 cut(s) | 1525, 2194 |
| PpsI | GAGTC | 2 cut(s) | 1525, 2194 |
| PscI | ACATGT | 3 cut(s) | 370, 1234, 2624 |
| PsiI | TTATAA | 2 cut(s) | 693, 1395 |
| Psp124BI | GAGCTC | 1 cut(s) | 2480 |
| Psp6I | CCWGG | 3 cut(s) | 497, 1165, 2299 |
| PspFI | CCCAGC | 2 cut(s) | 1112, 1841 |
| PspGI | CCWGG | 3 cut(s) | 497, 1165, 2299 |
| PspOMI | GGGCCC | 1 cut(s) | 1031 |
| PspPI | GGNCC | 6 cut(s) | 94, 715, 1031, 1032, 1225, 2581 |
| PstI | CTGCAG | 2 cut(s) | 1702, 2140 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2114 |
| PsuI | RGATCY | 1 cut(s) | 320 |
| PteI | GCGCGC | 2 cut(s) | 20, 70 |
| PvuII | CAGCTG | 1 cut(s) | 2111 |
| RsaI | GTAC | 5 cut(s) | 795, 876, 1215, 2391, 2443 |
| RsaNI | GTAC | 5 cut(s) | 794, 875, 1214, 2390, 2442 |
| RseI | CAYNNNNRTG | 5 cut(s) | 38, 375, 734, 1833, 1986 |
| SacI | GAGCTC | 1 cut(s) | 2480 |
| Sau96I | GGNCC | 6 cut(s) | 94, 715, 1031, 1032, 1225, 2581 |
| SchI | GAGTC | 2 cut(s) | 1526, 2194 |
| ScrFI | CCNGG | 5 cut(s) | 499, 656, 1167, 1498, 2301 |
| SduI | GDGCHC | 3 cut(s) | 1035, 1468, 2480 |
| SfcI | CTRYAG | 3 cut(s) | 1698, 2106, 2136 |
| Sfr274I | CTCGAG | 1 cut(s) | 1514 |
| SgsI | GGCGCGCC | 1 cut(s) | 70 |
| SinI | GGWCC | 2 cut(s) | 1225, 2581 |
| SlaI | CTCGAG | 1 cut(s) | 1514 |
| SmiI | ATTTAAAT | 1 cut(s) | 1443 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 38, 375, 734, 1833, 1986 |
| SmlI | CTYRAG | 5 cut(s) | 675, 890, 1514, 1616, 2209 |
| SmoI | CTYRAG | 5 cut(s) | 675, 890, 1514, 1616, 2209 |
| SpeI | ACTAGT | 1 cut(s) | 1790 |
| SphI | GCATGC | 2 cut(s) | 473, 1832 |
| SspI | AATATT | 2 cut(s) | 1605, 2669 |
| SspMI | CTAG | 7 cut(s) | 134, 261, 482, 1001, 1791, 2031, 2370 |
| SstI | GAGCTC | 1 cut(s) | 2480 |
| StyD4I | CCNGG | 5 cut(s) | 497, 654, 1165, 1496, 2299 |
| StyI | CCWWGG | 2 cut(s) | 1459, 1635 |
| SwaI | ATTTAAAT | 1 cut(s) | 1443 |
| TaaI | ACNGT | 7 cut(s) | 705, 874, 1296, 1628, 1825, 2039, 2758 |
| TaiI | ACGT | 5 cut(s) | 562, 795, 862, 2598, 2751 |
| TaqII | GACCGA | 1 cut(s) | 1213 |
| TatI | WGTACW | 1 cut(s) | 874 |
| TauI | GCSGC | 5 cut(s) | 14, 17, 497, 1841, 2144 |
| TfiI | GAWTC | 8 cut(s) | 935, 1403, 1475, 1610, 2266, 2342, 2656, 2731 |
| TscAI | CASTG | 4 cut(s) | 1301, 1633, 1988, 2196 |
| TseFI | GTSAC | 4 cut(s) | 560, 1174, 2033, 2752 |
| Tsp45I | GTSAC | 4 cut(s) | 560, 1174, 2033, 2752 |
| TspRI | CASTG | 4 cut(s) | 1301, 1633, 1988, 2196 |
| VpaK11BI | GGWCC | 2 cut(s) | 1225, 2581 |
| XapI | RAATTY | 5 cut(s) | 955, 1048, 1575, 1926, 2689 |
| XceI | RCATGY | 5 cut(s) | 374, 473, 1238, 1832, 2628 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 430 |
| XhoI | CTCGAG | 1 cut(s) | 1514 |
| XmnI | GAANNNNTTC | 3 cut(s) | 513, 684, 1852 |
| XspI | CTAG | 7 cut(s) | 134, 261, 482, 1001, 1791, 2031, 2370 |
| ZraI | GACGTC | 1 cut(s) | 860 |
| Zsp2I | ATGCAT | 4 cut(s) | 870, 944, 970, 1203 |