Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002123

Physical Location & Seq

Genomic Coordinates Forward (+)

67398469 .. 67400254

Gene Structure 1786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60560

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGTTCGGACAATACCAGCTGGTGGTAGAATTAATATCAGTTCGACGCTACCAAATAGGCTCAGGAAGATGCTTGCACCTTTACACTGGCATGATTACAAGAAAAAGTATGGAATGCTAGATGATTTCGTTGCTGCTCATACTGAACTATTTGTGATTGAGGGGGACTATATTCAGCTGCGTGAAGGAGCTCAAGAGATGATAGCAGCTACAGCTGCCGTTGCCAGAGTTGCTGCTGCTGCAGCAGCATCATCCCCCTACTCTTCATGTTTGCCTTCTGTGGCTGTTACTCCAGTGGCACAGACTCTCCGCTTAAAGAAGATATCATCTCTTGATTCCAAAAATGTGGTTACTTCTACTCCAAATGCAAATAATGCACACTTGCAGTCTGTGAAGCAGAATCAGCAATTAAATGGTGTTTCAGGAGGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

15.43

Weight (kDa)

9.72

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7725	PF24851	1 - 61	8.7e-30	Domain of unknown function (DUF7725)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53620 AT5G53620 AT5G53620
fragaria_vesca	FvH4_7g32660 FvH4_7g32660 FvH4_7g32660 FvH4_7g32660
malus_domestica	MD01G1227300.v1.1 MD07G1297600.v1.1
prunus_persica	Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1
pyrus_communis	pycom01g23540 pycom07g27000
rosa_chinensis	RchiOBHm_Chr1g0382521 RchiOBHm_Chr1g0382561 RchiOBHm_Chr1g0382611 RchiOBHm_Chr1g0382631 RchiOBHm_Chr1g0382641
rosa_laevigata	RLG00000026170
rosa_multiflora	Rmu_co8064912.1_g000001 Rmu_sc0000110.1_g000056 Rmu_sc0006862.1_g000005 Rmu_sc0006862.1_g000008 Rmu_sc0006862.1_g000011 Rmu_sc0017237.1_g000002 Rmu_sc0017237.1_g000006
rosa_roxburghii	Rroxscaffold_1G00051710 Rroxscaffold_4G00277980 Rroxscaffold_4G00277990
rosa_rugosa	Rorug01G0435100 Rorug01G0435200 Rorug01G0435300 Rorug01G0435300
rosa_samantha	Rh1AG460200 Rh1BG416400 Rh1BG416500 Rh1BG416800 Rh1CG430200 Rh1DG448800 Rh1DG449000
rosa_wichuraiana	Rw1G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	23
AciI	CCGC	1 cut(s)	310
AfiI	CCNNNNNNNGG	1 cut(s)	23
AluBI	AGCT	5 cut(s)	20, 178, 191, 209, 215
AluI	AGCT	5 cut(s)	20, 178, 191, 209, 215
Alw21I	GWGCWC	1 cut(s)	193
ApeKI	GCWGC	9 cut(s)	134, 178, 206, 215, 233, 236, 239, 242, 245
AseI	ATTAAT	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	9 cut(s)	121, 165, 202, 218, 220, 223, 226, 254, 257
BceAI	ACGGC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	119
BfmI	CTRYAG	2 cut(s)	210, 240
BisI	GCNGC	9 cut(s)	135, 179, 207, 216, 234, 237, 240, 243, 246
BlsI	GCNGC	9 cut(s)	136, 180, 208, 217, 235, 238, 241, 244, 247
BmsI	GCATC	2 cut(s)	60, 257
BpmI	CTGGAG	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	177
BsaXI	ACNNNNNCTCC	4 cut(s)	291, 321, 343, 373
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse1I	ACTGG	2 cut(s)	92, 293
BseGI	GGATG	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	76
BseNI	ACTGG	2 cut(s)	92, 293
BseXI	GCAGC	9 cut(s)	121, 165, 202, 218, 220, 223, 226, 254, 257
BsiHKAI	GWGCWC	1 cut(s)	193
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	193
BspACI	CCGC	1 cut(s)	310
BspCNI	CTCAG	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	244
BsrI	ACTGG	2 cut(s)	92, 293
Bst6I	CTCTTC	1 cut(s)	268
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	251
BstMWI	GCNNNNNNNGC	9 cut(s)	212, 215, 221, 230, 239, 242, 245, 374, 403
BstSFI	CTRYAG	2 cut(s)	210, 240
BstV1I	GCAGC	9 cut(s)	121, 165, 202, 218, 220, 223, 226, 254, 257
BstXI	CCANNNNNNTGG	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	251
BtsIMutI	CAGTG	2 cut(s)	85, 300
Cac8I	GCNNGC	1 cut(s)	75
CseI	GACGC	1 cut(s)	55
CviAII	CATG	2 cut(s)	92, 267
CviJI	RGCY	7 cut(s)	20, 61, 178, 191, 209, 215, 284
CviKI_1	RGCY	7 cut(s)	20, 61, 178, 191, 209, 215, 284
DdeI	CTNAG	1 cut(s)	62
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
Ecl136II	GAGCTC	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	193
Eco32I	GATATC	1 cut(s)	324
Eco53kI	GAGCTC	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	191
EcoRV	GATATC	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	193
FaeI	CATG	2 cut(s)	95, 270
FaiI	YATR	6 cut(s)	93, 111, 141, 171, 268, 431
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	2 cut(s)	91, 266
Fnu4HI	GCNGC	9 cut(s)	135, 179, 207, 216, 234, 237, 240, 243, 246
FokI	GGATG	1 cut(s)	238
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	9 cut(s)	135, 179, 207, 216, 234, 237, 240, 243, 246
FspBI	CTAG	1 cut(s)	119
GluI	GCNGC	9 cut(s)	135, 179, 207, 216, 234, 237, 240, 243, 246
GsuI	CTGGAG	1 cut(s)	276
HgaI	GACGC	1 cut(s)	55
Hin1II	CATG	2 cut(s)	95, 270
HinfI	GANTC	3 cut(s)	304, 335, 400
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	4 cut(s)	64, 194, 332, 423
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	2 cut(s)	179, 285
HpyCH4V	TGCA	5 cut(s)	77, 242, 368, 377, 385
HpyF10VI	GCNNNNNNNGC	9 cut(s)	212, 215, 221, 230, 239, 242, 245, 374, 403
HpyF3I	CTNAG	1 cut(s)	62
Hsp92II	CATG	2 cut(s)	95, 270
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	7 cut(s)	6, 30, 49, 73, 238, 306, 408
Lsp1109I	GCAGC	9 cut(s)	121, 165, 202, 218, 220, 223, 226, 254, 257
LweI	GCATC	2 cut(s)	60, 257
MaeI	CTAG	1 cut(s)	119
MaeIII	GTNAC	2 cut(s)	286, 349
MboII	GAAGA	3 cut(s)	79, 255, 331
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	2 cut(s)	30, 407
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	2 cut(s)	154, 419
MseI	TTAA	3 cut(s)	33, 314, 410
MslI	CAYNNNNRTG	1 cut(s)	90
MspA1I	CMGCKG	3 cut(s)	20, 178, 215
Mva1269I	GAATGC	1 cut(s)	120
MwoI	GCNNNNNNNGC	9 cut(s)	212, 215, 221, 230, 239, 242, 245, 374, 403
NlaIII	CATG	2 cut(s)	95, 270
PctI	GAATGC	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	335, 400
PflMI	CCANNNNNTGG	1 cut(s)	23
PkrI	GCNGC	9 cut(s)	136, 180, 208, 217, 235, 238, 241, 244, 247
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PshBI	ATTAAT	1 cut(s)	33
Psp124BI	GAGCTC	1 cut(s)	193
PstI	CTGCAG	1 cut(s)	244
PvuII	CAGCTG	3 cut(s)	20, 178, 215
RseI	CAYNNNNRTG	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	193
SaqAI	TTAA	3 cut(s)	33, 314, 410
SatI	GCNGC	9 cut(s)	135, 179, 207, 216, 234, 237, 240, 243, 246
SchI	GAGTC	1 cut(s)	298
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	7 cut(s)	22, 82, 180, 193, 211, 217, 430
SfaNI	GCATC	2 cut(s)	60, 257
SfcI	CTRYAG	2 cut(s)	210, 240
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
Sse9I	AATT	2 cut(s)	30, 407
SsiI	CCGC	1 cut(s)	310
SspMI	CTAG	1 cut(s)	119
SstI	GAGCTC	1 cut(s)	193
TaqI	TCGA	1 cut(s)	44
TasI	AATT	2 cut(s)	30, 407
TfiI	GAWTC	2 cut(s)	335, 400
Tru1I	TTAA	3 cut(s)	33, 314, 410
Tru9I	TTAA	3 cut(s)	33, 314, 410
TscAI	CASTG	2 cut(s)	92, 300
TseI	GCWGC	9 cut(s)	134, 178, 206, 215, 233, 236, 239, 242, 245
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	2 cut(s)	92, 300
Van91I	CCANNNNNTGG	1 cut(s)	23
VspI	ATTAAT	1 cut(s)	33
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.