Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000110.1

Orthogroup ID

OG0002123

Physical Location & Seq

Genomic Coordinates Forward (+)

265259 .. 267557

Gene Structure 2299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000110.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggaggctacggccgccgcgcgcggtggttcgatgccggcgatgacgcaagctcagacgcgcaagcagtggcgcgccgtctcggagcatcattcggctcggaacatcggcgatgaggagctggagcgatcaaagttaggccattctgatgagagaacagtatatgagcagggaagagagccagttgatgtagacttttgttcgatctccatagatgggactttggaccatgacctcttgcagcagcggcttcacgatattgtcaggcaaagagaggaactgcagcatatggagactgagcttagagctcaaatgattgcaagatctgagataatggatatacaaaataactttgatgcccaactgaaggagcatgctaatgctgcttccaagcttcaggagcaactccatgaaaaggagcaggccatacatgatttggagagggaattggaagaaaaagatagagagctgcatgctaccaagttagataatgaagcggcttgggccaaagagggccttcttagagaacagaacaaagaattagcaactttcagaagagagcgtgaccattcagaagctgaaagagcccagcatatacagcaattacatgatcttcaagaacatattcaagaaaaagagaggcaacttattgagttgcaggaacagcataggcttgctcaagaagccattctatttaaggatgaacaactgagcgaagcccaagcttggatcacccgtgttcaagaaatggatgctttgcagtcaactacacttcaaaatcagttgcgggaacactcagaacactataatcagctctggcttggttggcaaagacaggttggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

33.07

Weight (kDa)

5.19

Isoelectric Point (pI)

55.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53620 AT5G53620 AT5G53620
fragaria_vesca	FvH4_7g32660 FvH4_7g32660 FvH4_7g32660 FvH4_7g32660
malus_domestica	MD01G1227300.v1.1 MD07G1297600.v1.1
prunus_persica	Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1
pyrus_communis	pycom01g23540 pycom07g27000
rosa_chinensis	RchiOBHm_Chr1g0382521 RchiOBHm_Chr1g0382561 RchiOBHm_Chr1g0382611 RchiOBHm_Chr1g0382631 RchiOBHm_Chr1g0382641
rosa_laevigata	RLG00000026170
rosa_multiflora	Rmu_co8064912.1_g000001 Rmu_sc0000110.1_g000056 Rmu_sc0006862.1_g000005 Rmu_sc0006862.1_g000008 Rmu_sc0006862.1_g000011 Rmu_sc0017237.1_g000002 Rmu_sc0017237.1_g000006
rosa_roxburghii	Rroxscaffold_1G00051710 Rroxscaffold_4G00277980 Rroxscaffold_4G00277990
rosa_rugosa	Rorug01G0435100 Rorug01G0435200 Rorug01G0435300 Rorug01G0435300
rosa_samantha	Rh1AG460200 Rh1BG416400 Rh1BG416500 Rh1BG416800 Rh1CG430200 Rh1DG448800 Rh1DG449000
rosa_wichuraiana	Rw1G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	192
AccII	CGCG	5 cut(s)	20, 22, 24, 61, 75
AciI	CCGC	6 cut(s)	15, 18, 24, 247, 497, 787
AclWI	GGATC	1 cut(s)	737
AcoI	YGGCCR	1 cut(s)	12
AcuI	CTGAAG	2 cut(s)	380, 386
AfiI	CCNNNNNNNGG	4 cut(s)	216, 367, 415, 726
AgsI	TTSAA	4 cut(s)	617, 629, 743, 776
AluBI	AGCT	9 cut(s)	53, 121, 301, 308, 394, 469, 578, 725, 814
AluI	AGCT	9 cut(s)	53, 121, 301, 308, 394, 469, 578, 725, 814
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	2 cut(s)	85, 287
AlwI	GGATC	1 cut(s)	737
AlwNI	CAGNNNCTG	1 cut(s)	578
AoxI	GGCC	5 cut(s)	12, 139, 423, 504, 514
ApeKI	GCWGC	5 cut(s)	241, 244, 283, 383, 469
AscI	GGCGCGCC	1 cut(s)	73
Asp700I	GAANNNNTTC	2 cut(s)	624, 687
AspLEI	GCGC	5 cut(s)	22, 24, 63, 75, 77
AspS9I	GGNCC	3 cut(s)	226, 504, 514
AsuHPI	GGTGA	1 cut(s)	724
AvaII	GGWCC	1 cut(s)	226
BanII	GRGCYC	2 cut(s)	310, 589
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	5 cut(s)	253, 256, 295, 370, 456
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	2 cut(s)	27, 62
BcoDI	GTCTC	2 cut(s)	85, 287
BfmI	CTRYAG	1 cut(s)	281
BglII	AGATCT	1 cut(s)	323
BisI	GCNGC	9 cut(s)	15, 18, 242, 245, 248, 284, 384, 470, 498
BlsI	GCNGC	9 cut(s)	16, 19, 243, 246, 249, 285, 385, 471, 499
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	3 cut(s)	226, 504, 514
BmsI	GCATC	4 cut(s)	24, 97, 346, 742
BpmI	CTGGAG	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	663
Bsc4I	CCNNNNNNNGG	4 cut(s)	216, 367, 415, 726
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	182
BseGI	GGATG	2 cut(s)	706, 757
BseLI	CCNNNNNNNGG	4 cut(s)	216, 367, 415, 726
BseMII	CTCAG	5 cut(s)	68, 288, 318, 701, 810
BseNI	ACTGG	1 cut(s)	182
BsePI	GCGCGC	2 cut(s)	20, 73
BseRI	GAGGAG	1 cut(s)	131
BseX3I	CGGCCG	1 cut(s)	12
BseXI	GCAGC	5 cut(s)	253, 256, 295, 370, 456
BseYI	CCCAGC	1 cut(s)	588
Bsh1236I	CGCG	5 cut(s)	20, 22, 24, 61, 75
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	5 cut(s)	14, 141, 425, 506, 516
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	4 cut(s)	216, 367, 415, 726
BsmAI	GTCTC	2 cut(s)	85, 287
BsmBI	CGTCTC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	5 cut(s)	14, 141, 425, 506, 516
Bsp1286I	GDGCHC	2 cut(s)	310, 589
Bsp143I	GATC	5 cut(s)	128, 204, 323, 610, 729
BspACI	CCGC	6 cut(s)	15, 18, 24, 247, 497, 787
BspANI	GGCC	5 cut(s)	14, 141, 425, 506, 516
BspCNI	CTCAG	5 cut(s)	67, 289, 319, 702, 809
BspFNI	CGCG	5 cut(s)	20, 22, 24, 61, 75
BspMAI	CTGCAG	1 cut(s)	285
BspPI	GGATC	1 cut(s)	737
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	182
BssAI	RCCGGY	1 cut(s)	37
BssHII	GCGCGC	2 cut(s)	20, 73
BssMI	GATC	5 cut(s)	128, 204, 323, 610, 729
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	2 cut(s)	169, 550
BstC8I	GCNNGC	9 cut(s)	22, 39, 51, 65, 75, 375, 423, 474, 675
BstDEI	CTNAG	7 cut(s)	54, 297, 302, 327, 521, 710, 796
BstF5I	GGATG	2 cut(s)	706, 757
BstFNI	CGCG	5 cut(s)	20, 22, 24, 61, 75
BstHHI	GCGC	5 cut(s)	22, 24, 63, 75, 77
BstKTI	GATC	5 cut(s)	131, 207, 326, 613, 732
BstMAI	GTCTC	2 cut(s)	85, 287
BstMBI	GATC	5 cut(s)	128, 204, 323, 610, 729
BstMCI	CGRYCG	1 cut(s)	15
BstNSI	RCATGY	2 cut(s)	377, 476
BstSFI	CTRYAG	1 cut(s)	281
BstUI	CGCG	5 cut(s)	20, 22, 24, 61, 75
BstV1I	GCAGC	5 cut(s)	253, 256, 295, 370, 456
BstX2I	RGATCY	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	323
BstZI	CGGCCG	1 cut(s)	12
BsuRI	GGCC	5 cut(s)	14, 141, 425, 506, 516
BtgZI	GCGATG	2 cut(s)	56, 126
BtsCI	GGATG	2 cut(s)	706, 757
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	74
Cac8I	GCNNGC	9 cut(s)	22, 39, 51, 65, 75, 375, 423, 474, 675
CaiI	CAGNNNCTG	1 cut(s)	578
CfoI	GCGC	5 cut(s)	22, 24, 63, 75, 77
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	3 cut(s)	226, 504, 514
CseI	GACGC	2 cut(s)	55, 67
CviAII	CATG	6 cut(s)	230, 374, 410, 431, 473, 608
DdeI	CTNAG	7 cut(s)	54, 297, 302, 327, 521, 710, 796
DpnI	GATC	5 cut(s)	130, 206, 325, 612, 731
DpnII	GATC	5 cut(s)	128, 204, 323, 610, 729
EaeI	YGGCCR	1 cut(s)	12
EagI	CGGCCG	1 cut(s)	12
Eam1104I	CTCTTC	2 cut(s)	169, 550
EarI	CTCTTC	2 cut(s)	169, 550
Ecl136II	GAGCTC	1 cut(s)	308
EclXI	CGGCCG	1 cut(s)	12
Eco24I	GRGCYC	2 cut(s)	310, 589
Eco47I	GGWCC	1 cut(s)	226
Eco52I	CGGCCG	1 cut(s)	12
Eco53kI	GAGCTC	1 cut(s)	308
Eco57I	CTGAAG	2 cut(s)	380, 386
EcoICRI	GAGCTC	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	514
EcoT38I	GRGCYC	2 cut(s)	310, 589
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	6 cut(s)	233, 377, 413, 434, 476, 611
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	6 cut(s)	229, 373, 409, 430, 472, 607
FauI	CCCGC	1 cut(s)	780
FauNDI	CATATG	1 cut(s)	288
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	9 cut(s)	15, 18, 242, 245, 248, 284, 384, 470, 498
FokI	GGATG	2 cut(s)	713, 764
FriOI	GRGCYC	2 cut(s)	310, 589
Fsp4HI	GCNGC	9 cut(s)	15, 18, 242, 245, 248, 284, 384, 470, 498
GlaI	GCGC	5 cut(s)	21, 23, 62, 74, 76
GluI	GCNGC	9 cut(s)	15, 18, 242, 245, 248, 284, 384, 470, 498
GsaI	CCCAGC	1 cut(s)	592
GsuI	CTGGAG	1 cut(s)	143
HaeIII	GGCC	5 cut(s)	14, 141, 425, 506, 516
HapII	CCGG	1 cut(s)	38
HgaI	GACGC	2 cut(s)	55, 67
HhaI	GCGC	5 cut(s)	22, 24, 63, 75, 77
Hin1II	CATG	6 cut(s)	233, 377, 413, 434, 476, 611
Hin6I	GCGC	5 cut(s)	20, 22, 61, 73, 75
HinP1I	GCGC	5 cut(s)	20, 22, 61, 73, 75
HincII	GTYRAC	1 cut(s)	765
HindII	GTYRAC	1 cut(s)	765
HindIII	AAGCTT	2 cut(s)	392, 723
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	1 cut(s)	724
Hpy166II	GTNNAC	2 cut(s)	193, 765
Hpy188I	TCNGA	8 cut(s)	57, 85, 102, 148, 328, 554, 574, 799
Hpy188III	TCNNGA	6 cut(s)	254, 398, 617, 629, 680, 743
Hpy8I	GTNNAC	2 cut(s)	193, 765
HpyAV	CCTTC	2 cut(s)	361, 527
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	6 cut(s)	241, 283, 320, 472, 658, 760
HpyF3I	CTNAG	7 cut(s)	54, 297, 302, 327, 521, 710, 796
Hsp92II	CATG	6 cut(s)	233, 377, 413, 434, 476, 611
HspAI	GCGC	5 cut(s)	20, 22, 61, 73, 75
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
Kzo9I	GATC	5 cut(s)	128, 204, 323, 610, 729
LmnI	GCTCC	6 cut(s)	85, 118, 124, 370, 400, 418
Lsp1109I	GCAGC	5 cut(s)	253, 256, 295, 370, 456
LweI	GCATC	4 cut(s)	24, 97, 346, 742
MaeIII	GTNAC	1 cut(s)	563
MalI	GATC	5 cut(s)	130, 206, 325, 612, 731
MauBI	CGCGCGCG	1 cut(s)	20
MboI	GATC	5 cut(s)	128, 204, 323, 610, 729
MboII	GAAGA	4 cut(s)	186, 464, 567, 605
MflI	RGATCY	1 cut(s)	323
MhlI	GDGCHC	2 cut(s)	310, 589
MluCI	AATT	3 cut(s)	446, 539, 602
MnlI	CCTC	6 cut(s)	109, 245, 268, 435, 505, 633
MroNI	GCCGGC	1 cut(s)	37
MroXI	GAANNNNTTC	2 cut(s)	624, 687
MseI	TTAA	1 cut(s)	696
MslI	CAYNNNNRTG	2 cut(s)	147, 378
MspA1I	CMGCKG	1 cut(s)	247
MspI	CCGG	1 cut(s)	38
MvnI	CGCG	5 cut(s)	20, 22, 24, 61, 75
NaeI	GCCGGC	1 cut(s)	39
NdeI	CATATG	1 cut(s)	288
NdeII	GATC	5 cut(s)	128, 204, 323, 610, 729
NgoMIV	GCCGGC	1 cut(s)	37
NlaIII	CATG	6 cut(s)	233, 377, 413, 434, 476, 611
NmuCI	GTSAC	1 cut(s)	563
NspI	RCATGY	2 cut(s)	377, 476
PaeI	GCATGC	2 cut(s)	377, 476
PalAI	GGCGCGCC	1 cut(s)	73
PauI	GCGCGC	2 cut(s)	20, 73
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PdiI	GCCGGC	1 cut(s)	39
PdmI	GAANNNNTTC	2 cut(s)	624, 687
PkrI	GCNGC	9 cut(s)	16, 19, 243, 246, 249, 285, 385, 471, 499
Psp124BI	GAGCTC	1 cut(s)	310
PspFI	CCCAGC	1 cut(s)	588
PspPI	GGNCC	3 cut(s)	226, 504, 514
PstI	CTGCAG	1 cut(s)	285
PstNI	CAGNNNCTG	1 cut(s)	578
PsuI	RGATCY	1 cut(s)	323
PteI	GCGCGC	2 cut(s)	20, 73
RseI	CAYNNNNRTG	2 cut(s)	147, 378
SacI	GAGCTC	1 cut(s)	310
SaqAI	TTAA	1 cut(s)	696
SatI	GCNGC	9 cut(s)	15, 18, 242, 245, 248, 284, 384, 470, 498
Sau3AI	GATC	5 cut(s)	128, 204, 323, 610, 729
Sau96I	GGNCC	3 cut(s)	226, 504, 514
SduI	GDGCHC	2 cut(s)	310, 589
SfaNI	GCATC	4 cut(s)	24, 97, 346, 742
SfcI	CTRYAG	1 cut(s)	281
SgsI	GGCGCGCC	1 cut(s)	73
SinI	GGWCC	1 cut(s)	226
SmiMI	CAYNNNNRTG	2 cut(s)	147, 378
SmlI	CTYRAG	1 cut(s)	678
SmoI	CTYRAG	1 cut(s)	678
SphI	GCATGC	2 cut(s)	377, 476
Sse9I	AATT	3 cut(s)	446, 539, 602
SsiI	CCGC	6 cut(s)	15, 18, 24, 247, 497, 787
SstI	GAGCTC	1 cut(s)	310
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	2 cut(s)	32, 203
TasI	AATT	3 cut(s)	446, 539, 602
TauI	GCSGC	4 cut(s)	17, 20, 250, 500
Tru1I	TTAA	1 cut(s)	696
Tru9I	TTAA	1 cut(s)	696
TscAI	CASTG	1 cut(s)	74
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	5 cut(s)	241, 244, 283, 383, 469
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	3 cut(s)	426, 507, 717
TspRI	CASTG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	226
XceI	RCATGY	2 cut(s)	377, 476
XcmI	CCANNNNNNNNNTGG	1 cut(s)	433
XmiI	GTMKAC	1 cut(s)	192
XmnI	GAANNNNTTC	2 cut(s)	624, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.