MD00G1176000.v1.1

Armadillo beta-catenin repeat family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0022372
Physical Location & Seq
Forward (+)
40728026 .. 40729039
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1176000.v1.1.491

Sequence Viewer

Length: 1014 bp
ATGGACTGGTCTCAGCTTAACCATGTATCACGTGAGCCACTTCTGTTCCTGATTTGGGAAAAAATTGCTCTCCTTGCTGACACGCGTAATTCGTTCCAAGTTCGATCAGAAGCAGCAGCTACACTTGGTGAGATTTCTCGGCACGATTGCGAACATAGCATCATTGAAGAAGGGGGAGTTGAACCCCTCGTGGGAGAGGGTCCAGTCGAAGGCCAAGAGAATGCTGTCCGGACTCTGGGGTCACTTGGACATGCCTGGGAAAGCGTTGAACACGTGATCCTTGCTGATGCATGCAAAGTGTGGGCAAAAATCCTCCGAGAAGGTCCGATGAAAGTTCAGGCTGCCGTGGCTTGGGCGGTGTCAGAGATCGCAGCTAGACACCCCAAATGCCGTGATGTTTTTGTACGGCATGATGTAGTCTACTGGCTCTTGAGCCATCTAGCATTCGAAACTGTTGAAGTAGATAGTAACCATGCCACGAGCAAAACCAATAGTAATGTCAACGGCAATGAAGACCCTGCCACCAAGGCTGAAATGAAAGCTATGGCGACCAGAGCCCTTGCCAAACTAGCCAAGGGGAACTCAGCCATTGTTCCTAGCATCGCAGAATCAAGTGTCCACTTAATTTTAGCCGTGAACCTAGAAAAGGGTACCAAAGATGTTCAACTGCAATCTGCCGAAGCATTAATGGAGATCACTGCGGTTGCTGAGGAGGATGCTGAACTGAGAACATCTGCCTTGTATCGTAATTCTCCGGCTCGGAAATCTATCGTTGATCAATTAGTAATAAAGATCACCGATGAGAAGGAAGATCCGGAGCTCCTGATCCCGTGCATTAAAGCTGTTGGGAATTTAGGAACAACATTTGAAGCAACAGACACAAGGATGATTGTCGACCCTCTTCTGCGACTTTTACATGAAACAAACAATTTCGTTACGAAAAATCTTGCATTGCCCTCGCAAAATTTGCATGTACAAGCAACTATTTTCACGTTGAGGTTTCCAAGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

338

Amino Acids

37.12

Weight (kDa)

5.5

Isoelectric Point (pI)

30.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022372)

Species Orthologous Gene IDs
malus_domestica MD00G1176000.v1.1 MD02G1110300.v1.1 MD02G1135200.v1.1
pyrus_communis pycom02g10630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 238
Acc65I GGTACC 1 cut(s) 650
AccB1I GGYRCC 1 cut(s) 650
AccI GTMKAC 2 cut(s) 420, 894
AccII CGCG 1 cut(s) 85
AccIII TCCGGA 2 cut(s) 228, 814
AciI CCGC 2 cut(s) 356, 701
AclWI GGATC 3 cut(s) 271, 806, 820
AcsI RAATTY 2 cut(s) 850, 964
AcvI CACGTG 2 cut(s) 32, 274
AdeI CACNNNGTG 1 cut(s) 128
AfaI GTAC 3 cut(s) 405, 652, 975
AfiI CCNNNNNNNGG 6 cut(s) 55, 191, 209, 235, 351, 646
AflIII ACRYGT 2 cut(s) 83, 271
AgsI TTSAA 6 cut(s) 167, 182, 269, 458, 665, 869
AjnI CCWGG 1 cut(s) 254
AloI GAACNNNNNNTCC 2 cut(s) 261, 293
AluBI AGCT 6 cut(s) 16, 119, 374, 542, 820, 842
AluI AGCT 6 cut(s) 16, 119, 374, 542, 820, 842
Alw21I GWGCWC 1 cut(s) 822
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 3 cut(s) 271, 806, 820
Aor13HI TCCGGA 2 cut(s) 228, 814
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 4 cut(s) 113, 116, 341, 371
ApoI RAATTY 2 cut(s) 850, 964
AseI ATTAAT 1 cut(s) 686
Asp718I GGTACC 1 cut(s) 650
AspS9I GGNCC 2 cut(s) 200, 323
AsuHPI GGTGA 2 cut(s) 140, 787
AsuII TTCGAA 1 cut(s) 447
AvaII GGWCC 2 cut(s) 200, 323
BanI GGYRCC 1 cut(s) 650
BanII GRGCYC 2 cut(s) 559, 822
BauI CACGAG 2 cut(s) 188, 478
BbrPI CACGTG 2 cut(s) 32, 274
BbsI GAAGAC 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 822
BbvCI CCTCAGC 1 cut(s) 708
BbvI GCAGC 4 cut(s) 125, 128, 328, 383
BccI CCATC 1 cut(s) 444
BceAI ACGGC 5 cut(s) 329, 375, 422, 520, 617
BcgI CGANNNNNNTGC 2 cut(s) 939, 973
BciT130I CCWGG 1 cut(s) 256
BclI TGATCA 1 cut(s) 775
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 5 cut(s) 375, 440, 569, 597, 641
BglI GCCNNNNNGGC 1 cut(s) 527
BisI GCNGC 4 cut(s) 114, 117, 342, 372
BlsI GCNGC 4 cut(s) 115, 118, 343, 373
Bme1390I CCNGG 1 cut(s) 256
Bme18I GGWCC 2 cut(s) 200, 323
BmgT120I GGNCC 2 cut(s) 200, 323
BmiI GGNNCC 2 cut(s) 201, 652
BmrFI CCNGG 1 cut(s) 256
BmsI GCATC 4 cut(s) 168, 277, 609, 706
BpiI GAAGAC 1 cut(s) 519
Bpu10I CCTNAGC 1 cut(s) 708
Bpu14I TTCGAA 1 cut(s) 447
BpuEI CTTGAG 1 cut(s) 451
BsaAI YACGTR 2 cut(s) 32, 274
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 5 cut(s) 255, 345, 525, 573, 1004
BsaWI WCCGGW 2 cut(s) 228, 814
Bsc4I CCNNNNNNNGG 6 cut(s) 55, 191, 209, 235, 351, 646
Bse1I ACTGG 3 cut(s) 11, 203, 428
Bse3DI GCAATG 2 cut(s) 514, 950
BseAI TCCGGA 2 cut(s) 228, 814
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 5 cut(s) 255, 345, 525, 573, 1004
BseGI GGATG 2 cut(s) 721, 891
BseLI CCNNNNNNNGG 6 cut(s) 55, 191, 209, 235, 351, 646
BseMI GCAATG 2 cut(s) 514, 950
BseMII CTCAG 4 cut(s) 26, 597, 699, 716
BseNI ACTGG 3 cut(s) 11, 203, 428
BseRI GAGGAG 1 cut(s) 725
BseXI GCAGC 4 cut(s) 125, 128, 328, 383
Bsh1236I CGCG 1 cut(s) 85
BshFI GGCC 1 cut(s) 213
BshNI GGYRCC 1 cut(s) 650
BsiHKAI GWGCWC 1 cut(s) 822
BsiSI CCGG 3 cut(s) 229, 755, 815
BslI CCNNNNNNNGG 6 cut(s) 55, 191, 209, 235, 351, 646
BsmAI GTCTC 1 cut(s) 15
BsmI GAATGC 2 cut(s) 226, 443
BsnI GGCC 1 cut(s) 213
Bso31I GGTCTC 1 cut(s) 15
Bsp119I TTCGAA 1 cut(s) 447
Bsp1286I GDGCHC 2 cut(s) 559, 822
Bsp13I TCCGGA 2 cut(s) 228, 814
Bsp1407I TGTACA 1 cut(s) 973
Bsp143I GATC 8 cut(s) 104, 276, 366, 693, 775, 792, 811, 825
BspACI CCGC 2 cut(s) 356, 701
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 4 cut(s) 25, 596, 700, 717
BspEI TCCGGA 2 cut(s) 228, 814
BspFNI CGCG 1 cut(s) 85
BspLI GGNNCC 2 cut(s) 201, 652
BspPI GGATC 3 cut(s) 271, 806, 820
BspT104I TTCGAA 1 cut(s) 447
BspT107I GGYRCC 1 cut(s) 650
BspTNI GGTCTC 1 cut(s) 15
BsrDI GCAATG 2 cut(s) 514, 950
BsrGI TGTACA 1 cut(s) 973
BsrI ACTGG 3 cut(s) 11, 203, 428
BssECI CCNNGG 5 cut(s) 255, 345, 525, 573, 1004
BssMI GATC 8 cut(s) 104, 276, 366, 693, 775, 792, 811, 825
BssSI CACGAG 2 cut(s) 188, 478
BssT1I CCWWGG 3 cut(s) 525, 573, 1004
Bst2BI CACGAG 2 cut(s) 188, 478
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 454
Bst6I CTCTTC 1 cut(s) 906
BstAPI GCANNNNNTGC 1 cut(s) 967
BstAUI TGTACA 1 cut(s) 973
BstBAI YACGTR 2 cut(s) 32, 274
BstBI TTCGAA 1 cut(s) 447
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 4 cut(s) 12, 583, 708, 725
BstDSI CCRYGG 1 cut(s) 345
BstENI CCTNNNNNAGG 1 cut(s) 644
BstF5I GGATG 2 cut(s) 721, 891
BstFNI CGCG 1 cut(s) 85
BstKTI GATC 8 cut(s) 107, 279, 369, 696, 778, 795, 814, 828
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 8 cut(s) 104, 276, 366, 693, 775, 792, 811, 825
BstMWI GCNNNNNNNGC 7 cut(s) 74, 156, 347, 527, 554, 569, 967
BstNI CCWGG 1 cut(s) 256
BstNSI RCATGY 3 cut(s) 254, 294, 974
BstSCI CCNGG 1 cut(s) 254
BstUI CGCG 1 cut(s) 85
BstV1I GCAGC 4 cut(s) 125, 128, 328, 383
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 1 cut(s) 811
BstYI RGATCY 1 cut(s) 811
BsuRI GGCC 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 345
BtgZI GCGATG 1 cut(s) 586
BtsCI GGATG 2 cut(s) 721, 891
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 1 cut(s) 696
Cac8I GCNNGC 1 cut(s) 292
Cfr13I GGNCC 2 cut(s) 200, 323
Csp6I GTAC 3 cut(s) 404, 651, 974
CviAII CATG 7 cut(s) 23, 251, 291, 410, 473, 917, 971
CviQI GTAC 3 cut(s) 404, 651, 974
DdeI CTNAG 4 cut(s) 12, 583, 708, 725
DpnI GATC 8 cut(s) 106, 278, 368, 695, 777, 794, 813, 827
DpnII GATC 8 cut(s) 104, 276, 366, 693, 775, 792, 811, 825
DraIII CACNNNGTG 1 cut(s) 128
DrdI GACNNNNNNGTC 1 cut(s) 238
DseDI GACNNNNNNGTC 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 906
EarI CTCTTC 1 cut(s) 906
Ecl136II GAGCTC 1 cut(s) 820
Eco130I CCWWGG 3 cut(s) 525, 573, 1004
Eco24I GRGCYC 2 cut(s) 559, 822
Eco31I GGTCTC 1 cut(s) 15
Eco47I GGWCC 2 cut(s) 200, 323
Eco53kI GAGCTC 1 cut(s) 820
Eco72I CACGTG 2 cut(s) 32, 274
EcoICRI GAGCTC 1 cut(s) 820
EcoNI CCTNNNNNAGG 1 cut(s) 644
EcoRII CCWGG 1 cut(s) 254
EcoT14I CCWWGG 3 cut(s) 525, 573, 1004
EcoT22I ATGCAT 1 cut(s) 292
EcoT38I GRGCYC 2 cut(s) 559, 822
ErhI CCWWGG 3 cut(s) 525, 573, 1004
FaeI CATG 7 cut(s) 26, 254, 294, 413, 476, 920, 974
FaiI YATR 9 cut(s) 24, 156, 252, 292, 411, 474, 545, 918, 972
FatI CATG 7 cut(s) 22, 250, 290, 409, 472, 916, 970
FbaI TGATCA 1 cut(s) 775
FblI GTMKAC 2 cut(s) 420, 894
Fnu4HI GCNGC 4 cut(s) 114, 117, 342, 372
FokI GGATG 2 cut(s) 728, 898
FriOI GRGCYC 2 cut(s) 559, 822
Fsp4HI GCNGC 4 cut(s) 114, 117, 342, 372
FspBI CTAG 5 cut(s) 375, 440, 569, 597, 641
GluI GCNGC 4 cut(s) 114, 117, 342, 372
HaeIII GGCC 1 cut(s) 213
HapII CCGG 3 cut(s) 229, 755, 815
Hin1II CATG 7 cut(s) 26, 254, 294, 413, 476, 920, 974
HincII GTYRAC 2 cut(s) 502, 895
HindII GTYRAC 2 cut(s) 502, 895
HinfI GANTC 2 cut(s) 232, 608
HpaII CCGG 3 cut(s) 229, 755, 815
HphI GGTGA 2 cut(s) 140, 787
Hpy166II GTNNAC 5 cut(s) 421, 502, 619, 637, 895
Hpy188I TCNGA 5 cut(s) 109, 317, 327, 364, 762
Hpy188III TCNNGA 5 cut(s) 49, 229, 430, 815, 823
Hpy8I GTNNAC 5 cut(s) 421, 502, 619, 637, 895
HpyAV CCTTC 4 cut(s) 164, 203, 314, 799
HpyCH4III ACNGT 1 cut(s) 454
HpyCH4IV ACGT 3 cut(s) 31, 273, 992
HpyCH4V TGCA 6 cut(s) 290, 294, 670, 834, 950, 970
HpyF10VI GCNNNNNNNGC 7 cut(s) 74, 156, 347, 527, 554, 569, 967
HpyF3I CTNAG 4 cut(s) 12, 583, 708, 725
HpySE526I ACGT 3 cut(s) 31, 273, 992
Hsp92II CATG 7 cut(s) 26, 254, 294, 413, 476, 920, 974
Kpn2I TCCGGA 2 cut(s) 228, 814
KpnI GGTACC 1 cut(s) 654
Ksp22I TGATCA 1 cut(s) 775
Kzo9I GATC 8 cut(s) 104, 276, 366, 693, 775, 792, 811, 825
LmnI GCTCC 2 cut(s) 817, 825
Lsp1109I GCAGC 4 cut(s) 125, 128, 328, 383
LweI GCATC 4 cut(s) 168, 277, 609, 706
MaeI CTAG 5 cut(s) 375, 440, 569, 597, 641
MaeII ACGT 3 cut(s) 31, 273, 992
MaeIII GTNAC 3 cut(s) 240, 467, 934
MalI GATC 8 cut(s) 106, 278, 368, 695, 777, 794, 813, 827
MboI GATC 8 cut(s) 104, 276, 366, 693, 775, 792, 811, 825
MboII GAAGA 4 cut(s) 179, 524, 821, 893
MflI RGATCY 1 cut(s) 811
MhlI GDGCHC 2 cut(s) 559, 822
MluCI AATT 8 cut(s) 63, 88, 624, 748, 779, 850, 928, 964
MluI ACGCGT 1 cut(s) 83
MlyI GAGTC 1 cut(s) 226
MnlI CCTC 8 cut(s) 190, 197, 323, 703, 706, 909, 967, 990
Mph1103I ATGCAT 1 cut(s) 292
MroI TCCGGA 2 cut(s) 228, 814
MseI TTAA 4 cut(s) 18, 623, 686, 837
MslI CAYNNNNRTG 1 cut(s) 884
MspI CCGG 3 cut(s) 229, 755, 815
MspR9I CCNGG 1 cut(s) 256
Mva1269I GAATGC 2 cut(s) 226, 443
MvaI CCWGG 1 cut(s) 256
MvnI CGCG 1 cut(s) 85
MwoI GCNNNNNNNGC 7 cut(s) 74, 156, 347, 527, 554, 569, 967
NdeII GATC 8 cut(s) 104, 276, 366, 693, 775, 792, 811, 825
NlaIII CATG 7 cut(s) 26, 254, 294, 413, 476, 920, 974
NlaIV GGNNCC 2 cut(s) 201, 652
NmeAIII GCCGAG 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 240
NsiI ATGCAT 1 cut(s) 292
NspI RCATGY 3 cut(s) 254, 294, 974
NspV TTCGAA 1 cut(s) 447
PaeI GCATGC 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 89
PctI GAATGC 2 cut(s) 226, 443
PfeI GAWTC 1 cut(s) 608
PkrI GCNGC 4 cut(s) 115, 118, 343, 373
PleI GAGTC 1 cut(s) 226
PmaCI CACGTG 2 cut(s) 32, 274
PmlI CACGTG 2 cut(s) 32, 274
PpsI GAGTC 1 cut(s) 226
Ppu21I YACGTR 2 cut(s) 32, 274
PshBI ATTAAT 1 cut(s) 686
Psp124BI GAGCTC 1 cut(s) 822
Psp6I CCWGG 1 cut(s) 254
PspCI CACGTG 2 cut(s) 32, 274
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 201, 652
PspPI GGNCC 2 cut(s) 200, 323
PsuI RGATCY 1 cut(s) 811
RsaI GTAC 3 cut(s) 405, 652, 975
RsaNI GTAC 3 cut(s) 404, 651, 974
RseI CAYNNNNRTG 1 cut(s) 884
SacI GAGCTC 1 cut(s) 822
SalI GTCGAC 1 cut(s) 893
SaqAI TTAA 4 cut(s) 18, 623, 686, 837
SatI GCNGC 4 cut(s) 114, 117, 342, 372
Sau3AI GATC 8 cut(s) 104, 276, 366, 693, 775, 792, 811, 825
Sau96I GGNCC 2 cut(s) 200, 323
SchI GAGTC 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 256
SduI GDGCHC 2 cut(s) 559, 822
SfaNI GCATC 4 cut(s) 168, 277, 609, 706
SfuI TTCGAA 1 cut(s) 447
SinI GGWCC 2 cut(s) 200, 323
SmiMI CAYNNNNRTG 1 cut(s) 884
SmlI CTYRAG 1 cut(s) 430
SmoI CTYRAG 1 cut(s) 430
SphI GCATGC 1 cut(s) 294
Sse9I AATT 8 cut(s) 63, 88, 624, 748, 779, 850, 928, 964
SsiI CCGC 2 cut(s) 356, 701
SspMI CTAG 5 cut(s) 375, 440, 569, 597, 641
SstI GAGCTC 1 cut(s) 822
StyD4I CCNGG 1 cut(s) 254
StyI CCWWGG 3 cut(s) 525, 573, 1004
TaaI ACNGT 1 cut(s) 454
TaiI ACGT 3 cut(s) 34, 276, 995
TaqI TCGA 4 cut(s) 103, 207, 447, 894
TasI AATT 8 cut(s) 63, 88, 624, 748, 779, 850, 928, 964
TatI WGTACW 1 cut(s) 973
TfiI GAWTC 1 cut(s) 608
Tru1I TTAA 4 cut(s) 18, 623, 686, 837
Tru9I TTAA 4 cut(s) 18, 623, 686, 837
TscAI CASTG 1 cut(s) 703
TseFI GTSAC 1 cut(s) 240
TseI GCWGC 4 cut(s) 113, 116, 341, 371
Tsp45I GTSAC 1 cut(s) 240
TspDTI ATGAA 4 cut(s) 344, 525, 551, 933
TspRI CASTG 1 cut(s) 703
VpaK11BI GGWCC 2 cut(s) 200, 323
VspI ATTAAT 1 cut(s) 686
XagI CCTNNNNNAGG 1 cut(s) 644
XapI RAATTY 2 cut(s) 850, 964
XceI RCATGY 3 cut(s) 254, 294, 974
XmiI GTMKAC 2 cut(s) 420, 894
XspI CTAG 5 cut(s) 375, 440, 569, 597, 641
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.