Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0022372

Physical Location & Seq

Genomic Coordinates Forward (+)

11020486 .. 11021367

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1135200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGAAGAACTCTTATGCTCACATCATCATCAAGATCATCAACCATTTCAACATCACGTGTTTCGTGCCCCACGGCATCAACCCTTTAAGGCTCAGGGATATGTTGATGCAGCTCGAAAATGTAATTGGCGACGTGTCGTGGCTGACCATCCTGCTTAGTTCTGTGAATAGTGAGGACATGGACTGGTCTCAGCTTAACCATGTATCACGTGAGCCACTTCTGTTCCTGATTTGGGAAAAAATTGCTCTCCTTGCTGACACGCGTAATTCGTTCCAAGTTCGATCAGAAGCAGCAGCTACACTTGGTGAGATATCTCGGCACGATTGCGAACATAGCATCATTGAAGAAGGGGGAGTTGAACCCTTGTTGAAATTCGTGGGAGAGGGTCCAATCGAAAGCCAAGAGAATGCTGTCCGGACTCTGGGGTCACCCGGACATGCCTGGGAAAGCGTCGAACGCGTGATCCTTGCTGATGCATGCAAAGTGTGTGCAATAATCCTCCGAGAAGGTCCGATGAAAGTTCAGGCTGCTGTGGCTTGGGCGGTGTCAGAGTTCGCAGCTAGACACCCCAAATGCCGCGATGTTTTCGTACAGCATGATGTAGTCTACTGGCTCTTGAGCCATCTAGCATTCGAAACTGTTGAAGTAGATAGTAGCCATGCCACGAGCAAAACCAATAGTAATGTCAATGGCAATGAAGACCCTGCCACCAAGGCTGAAATGAAAGCTATGGCGACCAGAGCCCTTGCCAAACTAGCCAAGGGGAACTCAGCCATTGTTCCTAGCATCGGAGAATCAAGTGTCCTCTTAATTTTAGCCGTGAACCTAGAAAAGGGTACCAAAGATGTTCAACTGCAATATGGAGATCACTGCGGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000011 GO:0000322 GO:0000323 GO:0000324 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006996 GO:0007033 GO:0008150 GO:0009607 GO:0009987 GO:0016043 GO:0030447 GO:0030448 GO:0036180 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044182 GO:0044424 GO:0044444 GO:0044464 GO:0048308 GO:0050896 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

294

Amino Acids

32.27

Weight (kDa)

5.63

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022372)

Species	Orthologous Gene IDs
malus_domestica	MD00G1176000.v1.1 MD02G1110300.v1.1 MD02G1135200.v1.1
pyrus_communis	pycom02g10630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	424
Acc65I	GGTACC	1 cut(s)	836
AccB1I	GGYRCC	1 cut(s)	836
AccI	GTMKAC	1 cut(s)	606
AccII	CGCG	3 cut(s)	262, 459, 579
AccIII	TCCGGA	1 cut(s)	414
AciI	CCGC	3 cut(s)	542, 577, 873
AclWI	GGATC	1 cut(s)	457
AcsI	RAATTY	1 cut(s)	371
AcvI	CACGTG	2 cut(s)	57, 209
AdeI	CACNNNGTG	1 cut(s)	305
AfaI	GTAC	2 cut(s)	591, 838
AfiI	CCNNNNNNNGG	4 cut(s)	232, 421, 788, 832
AflIII	ACRYGT	4 cut(s)	56, 132, 260, 457
AgsI	TTSAA	6 cut(s)	49, 344, 359, 370, 644, 851
AjiI	CACGTC	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	440
AjuI	GAANNNNNNNTTGG	2 cut(s)	108, 140
AloI	GAACNNNNNNTCC	2 cut(s)	447, 479
AluBI	AGCT	5 cut(s)	112, 193, 296, 560, 728
AluI	AGCT	5 cut(s)	112, 193, 296, 560, 728
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	457
Aor13HI	TCCGGA	1 cut(s)	414
ApeKI	GCWGC	5 cut(s)	109, 290, 293, 527, 557
ApoI	RAATTY	1 cut(s)	371
Asp718I	GGTACC	1 cut(s)	836
AspS9I	GGNCC	2 cut(s)	386, 509
AsuC2I	CCSGG	1 cut(s)	432
AsuHPI	GGTGA	2 cut(s)	317, 420
AsuII	TTCGAA	1 cut(s)	633
AvaII	GGWCC	2 cut(s)	386, 509
BaeGI	GKGCMC	1 cut(s)	69
BanI	GGYRCC	1 cut(s)	836
BanII	GRGCYC	1 cut(s)	745
BauI	CACGAG	1 cut(s)	664
BbrPI	CACGTG	2 cut(s)	57, 209
BbsI	GAAGAC	1 cut(s)	705
BbvI	GCAGC	5 cut(s)	121, 302, 305, 514, 569
BccI	CCATC	2 cut(s)	155, 630
BceAI	ACGGC	2 cut(s)	88, 803
BciT130I	CCWGG	1 cut(s)	442
BcnI	CCSGG	1 cut(s)	432
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	5 cut(s)	561, 626, 755, 783, 827
BglI	GCCNNNNNGGC	1 cut(s)	713
BisI	GCNGC	6 cut(s)	110, 291, 294, 528, 558, 577
BlsI	GCNGC	6 cut(s)	111, 292, 295, 529, 559, 578
Bme1390I	CCNGG	2 cut(s)	432, 442
Bme18I	GGWCC	2 cut(s)	386, 509
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	2 cut(s)	386, 509
BmiI	GGNNCC	2 cut(s)	387, 838
BmrFI	CCNGG	2 cut(s)	432, 442
BmsI	GCATC	5 cut(s)	84, 96, 345, 463, 795
BpiI	GAAGAC	1 cut(s)	705
Bpu10I	CCTNAGC	1 cut(s)	92
Bpu14I	TTCGAA	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	637
BpuMI	CCSGG	1 cut(s)	432
BsaAI	YACGTR	2 cut(s)	57, 209
BsaI	GGTCTC	1 cut(s)	192
BsaJI	CCNNGG	4 cut(s)	70, 441, 711, 759
BsaWI	WCCGGW	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	4 cut(s)	232, 421, 788, 832
Bse1I	ACTGG	2 cut(s)	188, 614
Bse3DI	GCAATG	1 cut(s)	700
BseAI	TCCGGA	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	442
BseDI	CCNNGG	4 cut(s)	70, 441, 711, 759
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	4 cut(s)	232, 421, 788, 832
BseMI	GCAATG	1 cut(s)	700
BseMII	CTCAG	3 cut(s)	106, 203, 783
BseNI	ACTGG	2 cut(s)	188, 614
BseSI	GKGCMC	1 cut(s)	69
BseXI	GCAGC	5 cut(s)	121, 302, 305, 514, 569
Bsh1236I	CGCG	3 cut(s)	262, 459, 579
BshNI	GGYRCC	1 cut(s)	836
BsiSI	CCGG	2 cut(s)	415, 432
BslI	CCNNNNNNNGG	4 cut(s)	232, 421, 788, 832
BsmAI	GTCTC	1 cut(s)	192
BsmI	GAATGC	2 cut(s)	412, 629
Bso31I	GGTCTC	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	633
Bsp1286I	GDGCHC	2 cut(s)	69, 745
Bsp13I	TCCGGA	1 cut(s)	414
Bsp143I	GATC	4 cut(s)	33, 281, 462, 865
BspACI	CCGC	3 cut(s)	542, 577, 873
BspCNI	CTCAG	3 cut(s)	105, 202, 782
BspEI	TCCGGA	1 cut(s)	414
BspFNI	CGCG	3 cut(s)	262, 459, 579
BspLI	GGNNCC	2 cut(s)	387, 838
BspPI	GGATC	1 cut(s)	457
BspT104I	TTCGAA	1 cut(s)	633
BspT107I	GGYRCC	1 cut(s)	836
BspTNI	GGTCTC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	700
BsrI	ACTGG	2 cut(s)	188, 614
BssECI	CCNNGG	4 cut(s)	70, 441, 711, 759
BssMI	GATC	4 cut(s)	33, 281, 462, 865
BssSI	CACGAG	1 cut(s)	664
BssT1I	CCWWGG	2 cut(s)	711, 759
Bst2BI	CACGAG	1 cut(s)	664
Bst2UI	CCWGG	1 cut(s)	442
Bst4CI	ACNGT	1 cut(s)	640
BstBAI	YACGTR	2 cut(s)	57, 209
BstBI	TTCGAA	1 cut(s)	633
BstC8I	GCNNGC	1 cut(s)	478
BstDEI	CTNAG	4 cut(s)	92, 155, 189, 769
BstDSI	CCRYGG	1 cut(s)	70
BstEII	GGTNACC	1 cut(s)	426
BstENI	CCTNNNNNAGG	1 cut(s)	830
BstF5I	GGATG	1 cut(s)	147
BstFNI	CGCG	3 cut(s)	262, 459, 579
BstKTI	GATC	4 cut(s)	36, 284, 465, 868
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	4 cut(s)	33, 281, 462, 865
BstMWI	GCNNNNNNNGC	7 cut(s)	251, 333, 456, 533, 713, 740, 755
BstNI	CCWGG	1 cut(s)	442
BstNSI	RCATGY	2 cut(s)	440, 480
BstPI	GGTNACC	1 cut(s)	426
BstSCI	CCNGG	2 cut(s)	430, 440
BstSLI	GKGCMC	1 cut(s)	69
BstUI	CGCG	3 cut(s)	262, 459, 579
BstV1I	GCAGC	5 cut(s)	121, 302, 305, 514, 569
BstV2I	GAAGAC	1 cut(s)	705
BtgI	CCRYGG	1 cut(s)	70
BtgZI	GCGATG	1 cut(s)	594
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	147
BtsI	GCAGTG	1 cut(s)	868
BtsIMutI	CAGTG	1 cut(s)	868
Cac8I	GCNNGC	1 cut(s)	478
Cfr13I	GGNCC	2 cut(s)	386, 509
CseI	GACGC	1 cut(s)	439
Csp6I	GTAC	2 cut(s)	590, 837
CviAII	CATG	6 cut(s)	178, 200, 437, 477, 596, 659
CviQI	GTAC	2 cut(s)	590, 837
DdeI	CTNAG	4 cut(s)	92, 155, 189, 769
DpnI	GATC	4 cut(s)	35, 283, 464, 867
DpnII	GATC	4 cut(s)	33, 281, 462, 865
DraIII	CACNNNGTG	1 cut(s)	305
DrdI	GACNNNNNNGTC	1 cut(s)	424
DseDI	GACNNNNNNGTC	1 cut(s)	424
Eco130I	CCWWGG	2 cut(s)	711, 759
Eco24I	GRGCYC	1 cut(s)	745
Eco31I	GGTCTC	1 cut(s)	192
Eco32I	GATATC	1 cut(s)	312
Eco47I	GGWCC	2 cut(s)	386, 509
Eco72I	CACGTG	2 cut(s)	57, 209
Eco91I	GGTNACC	1 cut(s)	426
EcoNI	CCTNNNNNAGG	1 cut(s)	830
EcoO65I	GGTNACC	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	440
EcoRV	GATATC	1 cut(s)	312
EcoT14I	CCWWGG	2 cut(s)	711, 759
EcoT22I	ATGCAT	1 cut(s)	478
EcoT38I	GRGCYC	1 cut(s)	745
ErhI	CCWWGG	2 cut(s)	711, 759
FaeI	CATG	6 cut(s)	181, 203, 440, 480, 599, 662
FatI	CATG	6 cut(s)	177, 199, 436, 476, 595, 658
FblI	GTMKAC	1 cut(s)	606
Fnu4HI	GCNGC	6 cut(s)	110, 291, 294, 528, 558, 577
FokI	GGATG	1 cut(s)	134
FriOI	GRGCYC	1 cut(s)	745
Fsp4HI	GCNGC	6 cut(s)	110, 291, 294, 528, 558, 577
FspBI	CTAG	5 cut(s)	561, 626, 755, 783, 827
GluI	GCNGC	6 cut(s)	110, 291, 294, 528, 558, 577
HapII	CCGG	2 cut(s)	415, 432
HgaI	GACGC	1 cut(s)	439
Hin1II	CATG	6 cut(s)	181, 203, 440, 480, 599, 662
HinfI	GANTC	2 cut(s)	418, 794
HpaII	CCGG	2 cut(s)	415, 432
HphI	GGTGA	2 cut(s)	317, 420
Hpy166II	GTNNAC	2 cut(s)	607, 823
Hpy188I	TCNGA	5 cut(s)	286, 503, 513, 550, 791
Hpy188III	TCNNGA	4 cut(s)	31, 226, 415, 616
Hpy8I	GTNNAC	2 cut(s)	607, 823
Hpy99I	CGWCG	2 cut(s)	134, 455
HpyAV	CCTTC	2 cut(s)	341, 500
HpyCH4III	ACNGT	1 cut(s)	640
HpyCH4IV	ACGT	3 cut(s)	56, 132, 208
HpyCH4V	TGCA	5 cut(s)	109, 476, 480, 491, 856
HpyF10VI	GCNNNNNNNGC	7 cut(s)	251, 333, 456, 533, 713, 740, 755
HpyF3I	CTNAG	4 cut(s)	92, 155, 189, 769
HpySE526I	ACGT	3 cut(s)	56, 132, 208
Hsp92II	CATG	6 cut(s)	181, 203, 440, 480, 599, 662
Kpn2I	TCCGGA	1 cut(s)	414
KpnI	GGTACC	1 cut(s)	840
Kzo9I	GATC	4 cut(s)	33, 281, 462, 865
Lsp1109I	GCAGC	5 cut(s)	121, 302, 305, 514, 569
LweI	GCATC	5 cut(s)	84, 96, 345, 463, 795
MaeI	CTAG	5 cut(s)	561, 626, 755, 783, 827
MaeII	ACGT	3 cut(s)	56, 132, 208
MaeIII	GTNAC	1 cut(s)	426
MalI	GATC	4 cut(s)	35, 283, 464, 867
MboI	GATC	4 cut(s)	33, 281, 462, 865
MboII	GAAGA	3 cut(s)	16, 356, 710
MhlI	GDGCHC	2 cut(s)	69, 745
MluCI	AATT	5 cut(s)	123, 240, 265, 371, 810
MluI	ACGCGT	2 cut(s)	260, 457
MlyI	GAGTC	1 cut(s)	412
MnlI	CCTC	4 cut(s)	166, 376, 509, 815
Mph1103I	ATGCAT	1 cut(s)	478
MroI	TCCGGA	1 cut(s)	414
MseI	TTAA	3 cut(s)	86, 195, 809
MspI	CCGG	2 cut(s)	415, 432
MspR9I	CCNGG	2 cut(s)	432, 442
Mva1269I	GAATGC	2 cut(s)	412, 629
MvaI	CCWGG	1 cut(s)	442
MvnI	CGCG	3 cut(s)	262, 459, 579
MwoI	GCNNNNNNNGC	7 cut(s)	251, 333, 456, 533, 713, 740, 755
NciI	CCSGG	1 cut(s)	432
NdeII	GATC	4 cut(s)	33, 281, 462, 865
NlaIII	CATG	6 cut(s)	181, 203, 440, 480, 599, 662
NlaIV	GGNNCC	2 cut(s)	387, 838
NmeAIII	GCCGAG	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	426
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	2 cut(s)	440, 480
NspV	TTCGAA	1 cut(s)	633
PaeI	GCATGC	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	1 cut(s)	266
PctI	GAATGC	2 cut(s)	412, 629
PfeI	GAWTC	1 cut(s)	794
PkrI	GCNGC	6 cut(s)	111, 292, 295, 529, 559, 578
PleI	GAGTC	1 cut(s)	412
PmaCI	CACGTG	2 cut(s)	57, 209
PmlI	CACGTG	2 cut(s)	57, 209
PpsI	GAGTC	1 cut(s)	412
Ppu21I	YACGTR	2 cut(s)	57, 209
Psp6I	CCWGG	1 cut(s)	440
PspCI	CACGTG	2 cut(s)	57, 209
PspEI	GGTNACC	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	440
PspN4I	GGNNCC	2 cut(s)	387, 838
PspPI	GGNCC	2 cut(s)	386, 509
RsaI	GTAC	2 cut(s)	591, 838
RsaNI	GTAC	2 cut(s)	590, 837
SaqAI	TTAA	3 cut(s)	86, 195, 809
SatI	GCNGC	6 cut(s)	110, 291, 294, 528, 558, 577
Sau3AI	GATC	4 cut(s)	33, 281, 462, 865
Sau96I	GGNCC	2 cut(s)	386, 509
SchI	GAGTC	1 cut(s)	412
ScrFI	CCNGG	2 cut(s)	432, 442
SduI	GDGCHC	2 cut(s)	69, 745
SfaNI	GCATC	5 cut(s)	84, 96, 345, 463, 795
SfuI	TTCGAA	1 cut(s)	633
SinI	GGWCC	2 cut(s)	386, 509
SmlI	CTYRAG	1 cut(s)	616
SmoI	CTYRAG	1 cut(s)	616
SphI	GCATGC	1 cut(s)	480
Sse9I	AATT	5 cut(s)	123, 240, 265, 371, 810
SsiI	CCGC	3 cut(s)	542, 577, 873
SspMI	CTAG	5 cut(s)	561, 626, 755, 783, 827
StyD4I	CCNGG	2 cut(s)	430, 440
StyI	CCWWGG	2 cut(s)	711, 759
TaaI	ACNGT	1 cut(s)	640
TaiI	ACGT	3 cut(s)	59, 135, 211
TaqI	TCGA	5 cut(s)	114, 280, 393, 453, 633
TasI	AATT	5 cut(s)	123, 240, 265, 371, 810
TauI	GCSGC	1 cut(s)	579
TfiI	GAWTC	1 cut(s)	794
Tru1I	TTAA	3 cut(s)	86, 195, 809
Tru9I	TTAA	3 cut(s)	86, 195, 809
TscAI	CASTG	1 cut(s)	875
TseFI	GTSAC	1 cut(s)	426
TseI	GCWGC	5 cut(s)	109, 290, 293, 527, 557
Tsp45I	GTSAC	1 cut(s)	426
TspDTI	ATGAA	4 cut(s)	17, 530, 711, 737
TspRI	CASTG	1 cut(s)	875
VpaK11BI	GGWCC	2 cut(s)	386, 509
XagI	CCTNNNNNAGG	1 cut(s)	830
XapI	RAATTY	1 cut(s)	371
XceI	RCATGY	2 cut(s)	440, 480
XmiI	GTMKAC	1 cut(s)	606
XspI	CTAG	5 cut(s)	561, 626, 755, 783, 827
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.