MD02G1110300.v1.1

Armadillo beta-catenin repeat family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0022372
Physical Location & Seq
Forward (+)
8960513 .. 8961395
883 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1110300.v1.1.491

Sequence Viewer

Length: 801 bp
ATGAAGAACTCTTATGCTCACATCATCATCAAAATCATCAACCATTTCAACATCACGTGTTTCGTGCCCCACGGCATCAACCCTTTAAGGCTCAGGGATATGTTGATGCAGCTCGAAAATGTAATTGGCGACGTGTCGTGGCTGACCATCCTGCTTAGTTCTGTGAATAGTGAGGACATGGACTGGTCTCAGCTTAACCATGTATCACCAGCAGCTACACTTGGTGAGATATCTCGGCACGATTGCGAACATAGCATCATTGAAGAAGAGGGAGTTGAACCCTTGTTGAAATTCGTGGGAGAGGGTCCAATCGAAAGCCAAGAGAATGCTGTCCGGACTCTGGGGTCACCCGGACATGCCTGGGAAAGCGTCGAACGCGTGATCCTTGCTGATGCATGCAAAGTGTGTGCAATAATCCTCCGAGAAGGTCCGATGAAAGTTCAGGCTGCCGTGACTTGGGCGGTGTCAGAGATCGCAGCTAGACACCCCAAATGCCGTGATGTTTTCGTCCGGCATGATGTAGTCTACTGGCTCTTGAGCCATCTAGCATTCGAAACTGTTGAAGTAGATAGTAACCATGCCACGAGCAAAACCAATAGTAATGTCAATGGCAATGAAGACCCTGCCACCAAGGCTGAAATGAAAGCTATGGCGACCAGAGCCCTTGCCAAACTAGCCAAGGGGAACTCAGCCATTGTTCCTAGCATCGCAGAATCAAGTGTCCTCTTAATTTTAGCCGTGAACCTAGAAAAGGGTACCAAAGATGTTCAACTGCAATATGGAGATCACTGCGGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

267

Amino Acids

29.21

Weight (kDa)

5.62

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022372)

Species Orthologous Gene IDs
malus_domestica MD00G1176000.v1.1 MD02G1110300.v1.1 MD02G1135200.v1.1
pyrus_communis pycom02g10630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 343
Acc65I GGTACC 1 cut(s) 755
AccB1I GGYRCC 1 cut(s) 755
AccI GTMKAC 1 cut(s) 525
AccII CGCG 1 cut(s) 378
AccIII TCCGGA 1 cut(s) 333
AciI CCGC 2 cut(s) 461, 792
AclWI GGATC 1 cut(s) 376
AcsI RAATTY 1 cut(s) 290
AcvI CACGTG 1 cut(s) 57
AdeI CACNNNGTG 1 cut(s) 224
AfaI GTAC 1 cut(s) 757
AfiI CCNNNNNNNGG 3 cut(s) 340, 456, 751
AflIII ACRYGT 3 cut(s) 56, 132, 376
AgsI TTSAA 6 cut(s) 49, 263, 278, 289, 563, 770
AjiI CACGTC 1 cut(s) 133
AjnI CCWGG 1 cut(s) 359
AjuI GAANNNNNNNTTGG 2 cut(s) 108, 140
AloI GAACNNNNNNTCC 2 cut(s) 366, 398
AluBI AGCT 5 cut(s) 112, 193, 215, 479, 647
AluI AGCT 5 cut(s) 112, 193, 215, 479, 647
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 1 cut(s) 376
Aor13HI TCCGGA 1 cut(s) 333
ApeKI GCWGC 4 cut(s) 109, 212, 446, 476
ApoI RAATTY 1 cut(s) 290
Asp718I GGTACC 1 cut(s) 755
AspS9I GGNCC 2 cut(s) 305, 428
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 3 cut(s) 198, 236, 339
AsuII TTCGAA 1 cut(s) 552
AvaII GGWCC 2 cut(s) 305, 428
BaeGI GKGCMC 1 cut(s) 69
BanI GGYRCC 1 cut(s) 755
BanII GRGCYC 1 cut(s) 664
BauI CACGAG 1 cut(s) 583
BbrPI CACGTG 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 624
BbvI GCAGC 4 cut(s) 121, 224, 433, 488
BccI CCATC 2 cut(s) 155, 549
BceAI ACGGC 4 cut(s) 88, 434, 480, 722
BciT130I CCWGG 1 cut(s) 361
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 5 cut(s) 480, 545, 674, 702, 746
BglI GCCNNNNNGGC 1 cut(s) 632
BisI GCNGC 4 cut(s) 110, 213, 447, 477
BlsI GCNGC 4 cut(s) 111, 214, 448, 478
Bme1390I CCNGG 2 cut(s) 351, 361
Bme18I GGWCC 2 cut(s) 305, 428
BmgBI CACGTC 1 cut(s) 133
BmgT120I GGNCC 2 cut(s) 305, 428
BmiI GGNNCC 2 cut(s) 306, 757
BmrFI CCNGG 2 cut(s) 351, 361
BmsI GCATC 5 cut(s) 84, 96, 264, 382, 714
BpiI GAAGAC 1 cut(s) 624
Bpu10I CCTNAGC 1 cut(s) 92
Bpu14I TTCGAA 1 cut(s) 552
BpuEI CTTGAG 1 cut(s) 556
BpuMI CCSGG 1 cut(s) 351
BsaAI YACGTR 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 192
BsaJI CCNNGG 4 cut(s) 70, 360, 630, 678
BsaWI WCCGGW 1 cut(s) 333
Bsc4I CCNNNNNNNGG 3 cut(s) 340, 456, 751
Bse1I ACTGG 2 cut(s) 188, 533
Bse3DI GCAATG 1 cut(s) 619
BseAI TCCGGA 1 cut(s) 333
BseBI CCWGG 1 cut(s) 361
BseDI CCNNGG 4 cut(s) 70, 360, 630, 678
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 3 cut(s) 340, 456, 751
BseMI GCAATG 1 cut(s) 619
BseMII CTCAG 3 cut(s) 106, 203, 702
BseNI ACTGG 2 cut(s) 188, 533
BseSI GKGCMC 1 cut(s) 69
BseXI GCAGC 4 cut(s) 121, 224, 433, 488
Bsh1236I CGCG 1 cut(s) 378
BshNI GGYRCC 1 cut(s) 755
BsiSI CCGG 3 cut(s) 334, 351, 511
BslI CCNNNNNNNGG 3 cut(s) 340, 456, 751
BsmAI GTCTC 1 cut(s) 192
BsmI GAATGC 2 cut(s) 331, 548
Bso31I GGTCTC 1 cut(s) 192
Bsp119I TTCGAA 1 cut(s) 552
Bsp1286I GDGCHC 2 cut(s) 69, 664
Bsp13I TCCGGA 1 cut(s) 333
Bsp143I GATC 3 cut(s) 381, 471, 784
BspACI CCGC 2 cut(s) 461, 792
BspCNI CTCAG 3 cut(s) 105, 202, 701
BspEI TCCGGA 1 cut(s) 333
BspFNI CGCG 1 cut(s) 378
BspLI GGNNCC 2 cut(s) 306, 757
BspPI GGATC 1 cut(s) 376
BspT104I TTCGAA 1 cut(s) 552
BspT107I GGYRCC 1 cut(s) 755
BspTNI GGTCTC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 619
BsrI ACTGG 2 cut(s) 188, 533
BssECI CCNNGG 4 cut(s) 70, 360, 630, 678
BssMI GATC 3 cut(s) 381, 471, 784
BssSI CACGAG 1 cut(s) 583
BssT1I CCWWGG 2 cut(s) 630, 678
Bst2BI CACGAG 1 cut(s) 583
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 1 cut(s) 559
Bst6I CTCTTC 1 cut(s) 261
BstBAI YACGTR 1 cut(s) 57
BstBI TTCGAA 1 cut(s) 552
BstC8I GCNNGC 1 cut(s) 397
BstDEI CTNAG 4 cut(s) 92, 155, 189, 688
BstDSI CCRYGG 1 cut(s) 70
BstEII GGTNACC 1 cut(s) 345
BstENI CCTNNNNNAGG 1 cut(s) 749
BstF5I GGATG 1 cut(s) 147
BstFNI CGCG 1 cut(s) 378
BstKTI GATC 3 cut(s) 384, 474, 787
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 3 cut(s) 381, 471, 784
BstMWI GCNNNNNNNGC 5 cut(s) 252, 375, 632, 659, 674
BstNI CCWGG 1 cut(s) 361
BstNSI RCATGY 2 cut(s) 359, 399
BstPI GGTNACC 1 cut(s) 345
BstSCI CCNGG 2 cut(s) 349, 359
BstSLI GKGCMC 1 cut(s) 69
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 4 cut(s) 121, 224, 433, 488
BstV2I GAAGAC 1 cut(s) 624
BtgI CCRYGG 1 cut(s) 70
BtgZI GCGATG 1 cut(s) 691
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 147
BtsI GCAGTG 1 cut(s) 787
BtsIMutI CAGTG 1 cut(s) 787
Cac8I GCNNGC 1 cut(s) 397
Cfr13I GGNCC 2 cut(s) 305, 428
CseI GACGC 1 cut(s) 358
Csp6I GTAC 1 cut(s) 756
CviAII CATG 6 cut(s) 178, 200, 356, 396, 515, 578
CviQI GTAC 1 cut(s) 756
DdeI CTNAG 4 cut(s) 92, 155, 189, 688
DpnI GATC 3 cut(s) 383, 473, 786
DpnII GATC 3 cut(s) 381, 471, 784
DraIII CACNNNGTG 1 cut(s) 224
DrdI GACNNNNNNGTC 1 cut(s) 343
DseDI GACNNNNNNGTC 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco130I CCWWGG 2 cut(s) 630, 678
Eco24I GRGCYC 1 cut(s) 664
Eco31I GGTCTC 1 cut(s) 192
Eco32I GATATC 1 cut(s) 231
Eco47I GGWCC 2 cut(s) 305, 428
Eco72I CACGTG 1 cut(s) 57
Eco91I GGTNACC 1 cut(s) 345
EcoNI CCTNNNNNAGG 1 cut(s) 749
EcoO65I GGTNACC 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 359
EcoRV GATATC 1 cut(s) 231
EcoT14I CCWWGG 2 cut(s) 630, 678
EcoT22I ATGCAT 1 cut(s) 397
EcoT38I GRGCYC 1 cut(s) 664
ErhI CCWWGG 2 cut(s) 630, 678
FaeI CATG 6 cut(s) 181, 203, 359, 399, 518, 581
FatI CATG 6 cut(s) 177, 199, 355, 395, 514, 577
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 4 cut(s) 110, 213, 447, 477
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 664
Fsp4HI GCNGC 4 cut(s) 110, 213, 447, 477
FspBI CTAG 5 cut(s) 480, 545, 674, 702, 746
GluI GCNGC 4 cut(s) 110, 213, 447, 477
HapII CCGG 3 cut(s) 334, 351, 511
HgaI GACGC 1 cut(s) 358
Hin1II CATG 6 cut(s) 181, 203, 359, 399, 518, 581
HinfI GANTC 2 cut(s) 337, 713
HpaII CCGG 3 cut(s) 334, 351, 511
HphI GGTGA 3 cut(s) 198, 236, 339
Hpy166II GTNNAC 2 cut(s) 526, 742
Hpy188I TCNGA 3 cut(s) 422, 432, 469
Hpy188III TCNNGA 2 cut(s) 334, 535
Hpy8I GTNNAC 2 cut(s) 526, 742
Hpy99I CGWCG 2 cut(s) 134, 374
HpyAV CCTTC 1 cut(s) 419
HpyCH4III ACNGT 1 cut(s) 559
HpyCH4IV ACGT 2 cut(s) 56, 132
HpyCH4V TGCA 5 cut(s) 109, 395, 399, 410, 775
HpyF10VI GCNNNNNNNGC 5 cut(s) 252, 375, 632, 659, 674
HpyF3I CTNAG 4 cut(s) 92, 155, 189, 688
HpySE526I ACGT 2 cut(s) 56, 132
Hsp92II CATG 6 cut(s) 181, 203, 359, 399, 518, 581
Kpn2I TCCGGA 1 cut(s) 333
KpnI GGTACC 1 cut(s) 759
Kzo9I GATC 3 cut(s) 381, 471, 784
Lsp1109I GCAGC 4 cut(s) 121, 224, 433, 488
LweI GCATC 5 cut(s) 84, 96, 264, 382, 714
MaeI CTAG 5 cut(s) 480, 545, 674, 702, 746
MaeII ACGT 2 cut(s) 56, 132
MaeIII GTNAC 3 cut(s) 345, 451, 572
MalI GATC 3 cut(s) 383, 473, 786
MboI GATC 3 cut(s) 381, 471, 784
MboII GAAGA 4 cut(s) 16, 275, 278, 629
MhlI GDGCHC 2 cut(s) 69, 664
MluCI AATT 3 cut(s) 123, 290, 729
MluI ACGCGT 1 cut(s) 376
MlyI GAGTC 1 cut(s) 331
MnlI CCTC 5 cut(s) 166, 262, 295, 428, 734
Mph1103I ATGCAT 1 cut(s) 397
MroI TCCGGA 1 cut(s) 333
MseI TTAA 3 cut(s) 86, 195, 728
MspI CCGG 3 cut(s) 334, 351, 511
MspR9I CCNGG 2 cut(s) 351, 361
Mva1269I GAATGC 2 cut(s) 331, 548
MvaI CCWGG 1 cut(s) 361
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 5 cut(s) 252, 375, 632, 659, 674
NciI CCSGG 1 cut(s) 351
NdeII GATC 3 cut(s) 381, 471, 784
NlaIII CATG 6 cut(s) 181, 203, 359, 399, 518, 581
NlaIV GGNNCC 2 cut(s) 306, 757
NmeAIII GCCGAG 1 cut(s) 214
NmuCI GTSAC 2 cut(s) 345, 451
NsiI ATGCAT 1 cut(s) 397
NspI RCATGY 2 cut(s) 359, 399
NspV TTCGAA 1 cut(s) 552
PaeI GCATGC 1 cut(s) 399
PctI GAATGC 2 cut(s) 331, 548
PfeI GAWTC 1 cut(s) 713
PkrI GCNGC 4 cut(s) 111, 214, 448, 478
PleI GAGTC 1 cut(s) 331
PmaCI CACGTG 1 cut(s) 57
PmlI CACGTG 1 cut(s) 57
PpsI GAGTC 1 cut(s) 331
Ppu21I YACGTR 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 359
PspCI CACGTG 1 cut(s) 57
PspEI GGTNACC 1 cut(s) 345
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 2 cut(s) 306, 757
PspPI GGNCC 2 cut(s) 305, 428
RsaI GTAC 1 cut(s) 757
RsaNI GTAC 1 cut(s) 756
SaqAI TTAA 3 cut(s) 86, 195, 728
SatI GCNGC 4 cut(s) 110, 213, 447, 477
Sau3AI GATC 3 cut(s) 381, 471, 784
Sau96I GGNCC 2 cut(s) 305, 428
SchI GAGTC 1 cut(s) 331
ScrFI CCNGG 2 cut(s) 351, 361
SduI GDGCHC 2 cut(s) 69, 664
SetI ASST 9 cut(s) 59, 114, 135, 195, 217, 430, 481, 649, 747
SfaNI GCATC 5 cut(s) 84, 96, 264, 382, 714
SfuI TTCGAA 1 cut(s) 552
SinI GGWCC 2 cut(s) 305, 428
SmlI CTYRAG 1 cut(s) 535
SmoI CTYRAG 1 cut(s) 535
SphI GCATGC 1 cut(s) 399
Sse9I AATT 3 cut(s) 123, 290, 729
SsiI CCGC 2 cut(s) 461, 792
SspMI CTAG 5 cut(s) 480, 545, 674, 702, 746
StyD4I CCNGG 2 cut(s) 349, 359
StyI CCWWGG 2 cut(s) 630, 678
TaaI ACNGT 1 cut(s) 559
TaiI ACGT 2 cut(s) 59, 135
TaqI TCGA 4 cut(s) 114, 312, 372, 552
TasI AATT 3 cut(s) 123, 290, 729
TfiI GAWTC 1 cut(s) 713
Tru1I TTAA 3 cut(s) 86, 195, 728
Tru9I TTAA 3 cut(s) 86, 195, 728
TscAI CASTG 1 cut(s) 794
TseFI GTSAC 2 cut(s) 345, 451
TseI GCWGC 4 cut(s) 109, 212, 446, 476
Tsp45I GTSAC 2 cut(s) 345, 451
TspDTI ATGAA 4 cut(s) 17, 449, 630, 656
TspRI CASTG 1 cut(s) 794
VpaK11BI GGWCC 2 cut(s) 305, 428
XagI CCTNNNNNAGG 1 cut(s) 749
XapI RAATTY 1 cut(s) 290
XceI RCATGY 2 cut(s) 359, 399
XmiI GTMKAC 1 cut(s) 525
XspI CTAG 5 cut(s) 480, 545, 674, 702, 746
Zsp2I ATGCAT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.