MD00G1214500.v1.1

Integrator complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0002505
Physical Location & Seq
Forward (+)
51216458 .. 51219892
3435 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1214500.v1.1.491

Sequence Viewer

Length: 1203 bp
ATGAAGGGATTTTCTGCTAAGATATATGTGACTGAAGCAACAGCAAGACTTGGGCAACTTATGATGGAGGATCTTGTTTCGATGCATATGGAAATCAGGCAGTTGTTTGGACCTGAGGAGTCATCTTTTCCTCGGTGGATGAAGTGGGAAGTGCTTAAGCTTCTTCCGTCTTCGTTGAGACGGCTGGTATTAGGCAAAGATGGGGGTGAGCTGGGTGGTTGGATGCCCTTGTACAGTGCAGCTGATGTGAAGGACTGCATGCAGAAGTTTCTAAGAGTTAAATATGCAGAGGAAACTTGCTACAACAGCACATTGATATTAAAGGCATTCAGTTCGGGATTAGAAATAGGCTCTTGTAATTGGACGATAAAGAGTCCCAAGGGGAGTGTTGGATTTATTTCAAGTTCCATCTTTGATTCTGCTCATGCAATGAATTTTGATTACCATGATCTTCAAGGGAATGATATGATGATATATTCAGATTTCTCATTCTTGGATGCTGCGGAACATGTTGAGAGTGACTTCGATAATGCAAGTGATTGTCAAGAGTTAGCCAAGTCTTTACTTAATATTGATGACAGTTTGGAGGAAAGGGACAAGCTAACTTTTATATGCTCCTGTGTAATTGACTCTGTAAAAGCTGGAGGCTCAGTCCTTATTCCTATTAGTCGACTTGGGATTATTCTGCAGCTGTTGGAACAGATATCATCTTCACTAGATGTTCTGAATTTGAAGGTTCCTATGTATATTATTTCTTCTGTAGCTGAAGAACTATTGGCTTTCACCAACATCGTACCTGAATGGCTTTGCAAGGAACGGCAAGAAAAGCTGTTTTGTGGTGAGCCATTGTTTGCACATGTCATGCTCATAAATGAGAAGAAGCTTCATGTGTTTCCGACAGTTCATTCACCTAAATTATTGATGAATTGGCAGGAACCATGCATAGTTTTCTCTCCTCACTGGAATCTGCGGCTTGGTCCTGCTGTTCATTTGCTCCGGCGCTGGTGTGGGGATCAGAACTCCTTGCTCATTCTTGAGAGTGGACCGGATGTTGAGCTGTCTCTCTTACCGTTCAAGCCAATGGAAATGAAGGTTCTTCAATGCTCTTTCCTCTCTGGGATAAGGTTGCAGAAAGTTGAAGCGTTGCTGAAGATATTGGAACCAAAAGTTGTTCTGGTACTTGCATGTCTTTATGCATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04626 map04016 map04626
Pfam Domains
Protein Families
Beta-Casp Lactamase_B_6

Protein Analysis

401

Amino Acids

45.09

Weight (kDa)

5.39

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-Casp PF10996 228 - 345 4.1e-10 Beta-Casp domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 670
AciI CCGC 2 cut(s) 503, 970
AclWI GGATC 2 cut(s) 78, 1020
AcsI RAATTY 2 cut(s) 433, 727
AcuI CTGAAG 3 cut(s) 54, 786, 1169
AfaI GTAC 3 cut(s) 233, 795, 1179
AflII CTTAAG 1 cut(s) 155
AflIII ACRYGT 2 cut(s) 508, 856
AgsI TTSAA 6 cut(s) 402, 455, 733, 1075, 1100, 1139
Alw26I GTCTC 2 cut(s) 172, 1065
AlwI GGATC 2 cut(s) 78, 1020
ApeKI GCWGC 3 cut(s) 239, 500, 688
ApoI RAATTY 2 cut(s) 433, 727
AspLEI GCGC 1 cut(s) 1002
AspS9I GGNCC 3 cut(s) 110, 977, 1043
AsuHPI GGTGA 4 cut(s) 218, 775, 851, 900
AvaII GGWCC 3 cut(s) 110, 977, 1043
AxyI CCTNAGG 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 3 cut(s) 251, 487, 700
BccI CCATC 3 cut(s) 58, 194, 416
BceAI ACGGC 2 cut(s) 197, 833
BcgI CGANNNNNNTGC 2 cut(s) 315, 349
BcoDI GTCTC 2 cut(s) 172, 1065
BfaI CTAG 1 cut(s) 716
BfmI CTRYAG 2 cut(s) 686, 759
BfoI RGCGCY 1 cut(s) 1003
BfrI CTTAAG 1 cut(s) 155
BisI GCNGC 4 cut(s) 240, 501, 689, 971
BlsI GCNGC 4 cut(s) 241, 502, 690, 972
Bme18I GGWCC 3 cut(s) 110, 977, 1043
BmgT120I GGNCC 3 cut(s) 110, 977, 1043
BmiI GGNNCC 3 cut(s) 738, 936, 1161
BmsI GCATC 3 cut(s) 72, 213, 487
BpiI GAAGAC 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 663
BpuEI CTTGAG 1 cut(s) 1055
BsaJI CCNNGG 2 cut(s) 131, 378
BsaWI WCCGGW 1 cut(s) 1045
BsaXI ACNNNNNCTCC 2 cut(s) 636, 666
Bse1I ACTGG 1 cut(s) 965
Bse21I CCTNAGG 1 cut(s) 114
Bse3DI GCAATG 1 cut(s) 435
BseDI CCNNGG 2 cut(s) 131, 378
BseGI GGATG 4 cut(s) 144, 228, 502, 1054
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 2 cut(s) 105, 663
BseNI ACTGG 1 cut(s) 965
BseRI GAGGAG 2 cut(s) 131, 945
BseXI GCAGC 3 cut(s) 251, 487, 700
BseYI CCCAGC 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 258
BsiSI CCGG 2 cut(s) 997, 1046
BslFI GGGAC 2 cut(s) 360, 608
BsmAI GTCTC 2 cut(s) 172, 1065
BsmBI CGTCTC 1 cut(s) 172
BsmFI GGGAC 2 cut(s) 360, 608
BsmI GAATGC 1 cut(s) 326
Bsp1407I TGTACA 1 cut(s) 231
Bsp143I GATC 3 cut(s) 70, 448, 1012
BspACI CCGC 2 cut(s) 503, 970
BspCNI CTCAG 2 cut(s) 106, 662
BspLI GGNNCC 3 cut(s) 738, 936, 1161
BspMAI CTGCAG 1 cut(s) 690
BspPI GGATC 2 cut(s) 78, 1020
BspTI CTTAAG 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 435
BsrGI TGTACA 1 cut(s) 231
BsrI ACTGG 1 cut(s) 965
BssECI CCNNGG 2 cut(s) 131, 378
BssMI GATC 3 cut(s) 70, 448, 1012
BssT1I CCWWGG 1 cut(s) 378
Bst4CI ACNGT 4 cut(s) 236, 581, 901, 1071
BstAFI CTTAAG 1 cut(s) 155
BstAUI TGTACA 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 4 cut(s) 18, 114, 272, 649
BstF5I GGATG 4 cut(s) 144, 228, 502, 1054
BstH2I RGCGCY 1 cut(s) 1003
BstHHI GCGC 1 cut(s) 1002
BstKTI GATC 3 cut(s) 73, 451, 1015
BstMAI GTCTC 2 cut(s) 172, 1065
BstMBI GATC 3 cut(s) 70, 448, 1012
BstMWI GCNNNNNNNGC 2 cut(s) 306, 826
BstNSI RCATGY 4 cut(s) 262, 512, 860, 1188
BstSFI CTRYAG 2 cut(s) 686, 759
BstV1I GCAGC 3 cut(s) 251, 487, 700
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
Bsu36I CCTNAGG 1 cut(s) 114
BtsCI GGATG 4 cut(s) 144, 228, 502, 1054
BtsIMutI CAGTG 2 cut(s) 241, 958
Cac8I GCNNGC 1 cut(s) 260
CfoI GCGC 1 cut(s) 1002
Cfr13I GGNCC 3 cut(s) 110, 977, 1043
Csp6I GTAC 3 cut(s) 232, 794, 1178
CviAII CATG 9 cut(s) 259, 425, 446, 509, 857, 862, 887, 939, 1185
CviQI GTAC 3 cut(s) 232, 794, 1178
DdeI CTNAG 4 cut(s) 18, 114, 272, 649
DpnI GATC 3 cut(s) 72, 450, 1014
DpnII GATC 3 cut(s) 70, 448, 1012
Eco130I CCWWGG 1 cut(s) 378
Eco32I GATATC 1 cut(s) 705
Eco47I GGWCC 3 cut(s) 110, 977, 1043
Eco57I CTGAAG 3 cut(s) 54, 786, 1169
Eco81I CCTNAGG 1 cut(s) 114
EcoRV GATATC 1 cut(s) 705
EcoT14I CCWWGG 1 cut(s) 378
EcoT22I ATGCAT 3 cut(s) 87, 944, 1198
ErhI CCWWGG 1 cut(s) 378
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 9 cut(s) 262, 428, 449, 512, 860, 865, 890, 942, 1188
FaqI GGGAC 2 cut(s) 360, 608
FatI CATG 9 cut(s) 258, 424, 445, 508, 856, 861, 886, 938, 1184
FauNDI CATATG 1 cut(s) 87
FblI GTMKAC 1 cut(s) 670
Fnu4HI GCNGC 4 cut(s) 240, 501, 689, 971
FokI GGATG 4 cut(s) 151, 235, 509, 1061
Fsp4HI GCNGC 4 cut(s) 240, 501, 689, 971
FspBI CTAG 1 cut(s) 716
GlaI GCGC 1 cut(s) 1001
GluI GCNGC 4 cut(s) 240, 501, 689, 971
GsaI CCCAGC 1 cut(s) 215
GsuI CTGGAG 1 cut(s) 663
HaeII RGCGCY 1 cut(s) 1003
HapII CCGG 2 cut(s) 997, 1046
HhaI GCGC 1 cut(s) 1002
Hin1II CATG 9 cut(s) 262, 428, 449, 512, 860, 865, 890, 942, 1188
Hin6I GCGC 1 cut(s) 1000
HinP1I GCGC 1 cut(s) 1000
HincII GTYRAC 1 cut(s) 671
HindII GTYRAC 1 cut(s) 671
HindIII AAGCTT 2 cut(s) 158, 881
HinfI GANTC 5 cut(s) 119, 373, 416, 629, 964
HpaII CCGG 2 cut(s) 997, 1046
HphI GGTGA 4 cut(s) 218, 775, 851, 900
Hpy166II GTNNAC 2 cut(s) 671, 1043
Hpy188I TCNGA 4 cut(s) 481, 726, 897, 1017
Hpy188III TCNNGA 3 cut(s) 336, 545, 1034
Hpy8I GTNNAC 2 cut(s) 671, 1043
HpyAV CCTTC 3 cut(s) 244, 727, 1084
HpyCH4III ACNGT 4 cut(s) 236, 581, 901, 1071
HpyF10VI GCNNNNNNNGC 2 cut(s) 306, 826
HpyF3I CTNAG 4 cut(s) 18, 114, 272, 649
Hsp92II CATG 9 cut(s) 262, 428, 449, 512, 860, 865, 890, 942, 1188
HspAI GCGC 1 cut(s) 1000
Kzo9I GATC 3 cut(s) 70, 448, 1012
LmnI GCTCC 2 cut(s) 620, 999
Lsp1109I GCAGC 3 cut(s) 251, 487, 700
LweI GCATC 3 cut(s) 72, 213, 487
MaeI CTAG 1 cut(s) 716
MaeIII GTNAC 2 cut(s) 28, 518
MalI GATC 3 cut(s) 72, 450, 1014
MboI GATC 3 cut(s) 70, 448, 1012
MboII GAAGA 9 cut(s) 155, 162, 443, 702, 747, 779, 889, 1088, 1162
MflI RGATCY 1 cut(s) 70
MluCI AATT 6 cut(s) 358, 433, 624, 727, 914, 925
MlyI GAGTC 3 cut(s) 128, 382, 623
MmeI TCCRAC 4 cut(s) 200, 370, 675, 920
MnlI CCTC 8 cut(s) 61, 109, 141, 283, 580, 638, 966, 1121
Mph1103I ATGCAT 3 cut(s) 87, 944, 1198
MseI TTAA 4 cut(s) 156, 279, 320, 567
MspA1I CMGCKG 2 cut(s) 242, 691
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 2 cut(s) 997, 1046
Mva1269I GAATGC 1 cut(s) 326
MwoI GCNNNNNNNGC 2 cut(s) 306, 826
NdeI CATATG 1 cut(s) 87
NdeII GATC 3 cut(s) 70, 448, 1012
NlaIII CATG 9 cut(s) 262, 428, 449, 512, 860, 865, 890, 942, 1188
NlaIV GGNNCC 3 cut(s) 738, 936, 1161
NmuCI GTSAC 2 cut(s) 28, 518
NsiI ATGCAT 3 cut(s) 87, 944, 1198
NspI RCATGY 4 cut(s) 262, 512, 860, 1188
PaeI GCATGC 1 cut(s) 262
PciI ACATGT 2 cut(s) 508, 856
PctI GAATGC 1 cut(s) 326
PfeI GAWTC 2 cut(s) 416, 964
PkrI GCNGC 4 cut(s) 241, 502, 690, 972
PleI GAGTC 3 cut(s) 127, 381, 623
PpsI GAGTC 3 cut(s) 127, 381, 623
PscI ACATGT 2 cut(s) 508, 856
PspFI CCCAGC 1 cut(s) 211
PspN4I GGNNCC 3 cut(s) 738, 936, 1161
PspPI GGNCC 3 cut(s) 110, 977, 1043
PstI CTGCAG 1 cut(s) 690
PsuI RGATCY 1 cut(s) 70
PvuII CAGCTG 2 cut(s) 242, 691
RsaI GTAC 3 cut(s) 233, 795, 1179
RsaNI GTAC 3 cut(s) 232, 794, 1178
SalI GTCGAC 1 cut(s) 669
SaqAI TTAA 4 cut(s) 156, 279, 320, 567
SatI GCNGC 4 cut(s) 240, 501, 689, 971
Sau3AI GATC 3 cut(s) 70, 448, 1012
Sau96I GGNCC 3 cut(s) 110, 977, 1043
SchI GAGTC 3 cut(s) 128, 382, 623
SfaNI GCATC 3 cut(s) 72, 213, 487
SfcI CTRYAG 2 cut(s) 686, 759
SinI GGWCC 3 cut(s) 110, 977, 1043
SmlI CTYRAG 2 cut(s) 155, 1034
SmoI CTYRAG 2 cut(s) 155, 1034
SphI GCATGC 1 cut(s) 262
Sse9I AATT 6 cut(s) 358, 433, 624, 727, 914, 925
SsiI CCGC 2 cut(s) 503, 970
SspI AATATT 1 cut(s) 571
SspMI CTAG 1 cut(s) 716
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 4 cut(s) 236, 581, 901, 1071
TaqI TCGA 3 cut(s) 80, 525, 670
TasI AATT 6 cut(s) 358, 433, 624, 727, 914, 925
TatI WGTACW 1 cut(s) 231
TauI GCSGC 1 cut(s) 973
TfiI GAWTC 2 cut(s) 416, 964
Tru1I TTAA 4 cut(s) 156, 279, 320, 567
Tru9I TTAA 4 cut(s) 156, 279, 320, 567
TscAI CASTG 2 cut(s) 241, 965
TseFI GTSAC 2 cut(s) 28, 518
TseI GCWGC 3 cut(s) 239, 500, 688
Tsp45I GTSAC 2 cut(s) 28, 518
TspDTI ATGAA 8 cut(s) 17, 155, 446, 875, 893, 938, 977, 1103
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 2 cut(s) 241, 965
Vha464I CTTAAG 1 cut(s) 155
VpaK11BI GGWCC 3 cut(s) 110, 977, 1043
XapI RAATTY 2 cut(s) 433, 727
XceI RCATGY 4 cut(s) 262, 512, 860, 1188
XmiI GTMKAC 1 cut(s) 670
XspI CTAG 1 cut(s) 716
Zsp2I ATGCAT 3 cut(s) 87, 944, 1198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.