Rw1G003910

Integrator complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002505
Physical Location & Seq
Forward (+)
7386773 .. 7390910
4138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G003910.1

Sequence Viewer

Length: 1266 bp
ATGGGTATGCTAGGGTTACCATTTCTTACTCGAATAAAGGGTTTCTCTGCTAAGATATACGTGACTGAAGCCACAGCAAGACTTGGACAGCTTATGATGGAGGATCTTGTTTCAATGCACATGGAAATCAGGCAGCTTTTTGGACCTGAAGAGTCATGTATTCCTCAGTGGATGAAGTGGGAAGAGCTTAAGCTTCTACCATCTTCCTTGAGAGATGTAGCTTTAGGCAAAGATGGAGGAGAGCTGGGTAGTTGGATGCCCTTATACAGTGCAGCAGATGTGAAGGATTGCATGCAGAAGGCTCAGAGACTTAAATATGCAGAGGAAACCTGCTACAACAGTACATTGATTATAAAGGCATTCAGTTCGGGTTTGGAAATAGGTGCTTGTAATTGGACAATAAATGGTCCTAAAGGAGGAATTGCATTCATATCTAGTTCCATCTTCGGTTCTGCTCATGCAATGAATTTTGATTATATTGCTCTTCAAGGGAATGATACTGTAATATATTCGGATTTTTCTTCCTTTGATGCTACAGAAGATATTGAGAATGATCACAGTAACTTTGTTCCAACTACACAATCATCTCTCAGAAATGAAGAAAATGATGAACAAGAGTTGGCCAAGTCGGTACTTCATGTTGATGATAATATGGAGGAAAATCAGAAACTAGCTTTTTTGTCCTCCCATGTCATTGATTCTGTAAAAGCTGGGGGTTCGGTCCTTGTTCCAGTTGGTCGACTTGGAATTGTTCTGCAGCTGTTAGAACAAATATCAGCTTCACTGGATGTTTCGTATTTGAAGGTTCCTATTTATATTGTTTCTTCTGTAGGTGAAGAATTATTGGCTTTCACCAACATTATACCGGAATGGCTATGCAAACAGCGGCAAGAAAAGCTGTTTTCTGGTCAGCCATTGTTTGGACATGTCGAGCTGATAAATGAGGGGAAGCTTCATGTGTTTCCAGCCATCCATTCACCTAAATTATTAATGAATTGGCAGGAGCCATGCATAGTTTTCTCTCCTCACTGGAGTCTGCGGCTTGGTCCTGCTGTTCATTTCCTGCAGCGCTGGTGTGGGGATCAGAACTCTCTACTCATTCTTGAGAATGAATTGGATGTTGAGCTGGCTCTCTTACCTTTCAAGCCAATGGCAATGAAGGTTCTTCAGTGCTCATTTCTTTCTGGGATAAGGTTGCAGAAAGTTCAACCATTGCTGAACATATTGCAACCAAAAGTTCTCCTGTTCCCCAAGGATTTGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04626 map04016 map04626
Pfam Domains
Protein Families
Beta-Casp Lactamase_B_6

Protein Analysis

421

Amino Acids

47.05

Weight (kDa)

5.16

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-Casp PF10996 252 - 368 1.5e-08 Beta-Casp domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 353
Acc36I ACCTGC 1 cut(s) 338
AccB7I CCANNNNNTGG 1 cut(s) 920
AccI GTMKAC 1 cut(s) 739
AciI CCGC 2 cut(s) 886, 1039
AclWI GGATC 2 cut(s) 111, 1089
AcoI YGGCCR 1 cut(s) 621
AcsI RAATTY 1 cut(s) 466
AcuI CTGAAG 3 cut(s) 87, 168, 1151
AfaI GTAC 2 cut(s) 343, 633
AfeI AGCGCT 1 cut(s) 1070
AfiI CCNNNNNNNGG 2 cut(s) 416, 920
AflII CTTAAG 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 925
AgsI TTSAA 5 cut(s) 114, 488, 802, 1144, 1208
Alw21I GWGCWC 1 cut(s) 1175
Alw26I GTCTC 1 cut(s) 301
AlwI GGATC 2 cut(s) 111, 1089
Aor51HI AGCGCT 1 cut(s) 1070
AoxI GGCC 1 cut(s) 621
ApeKI GCWGC 4 cut(s) 133, 272, 757, 1066
ApoI RAATTY 1 cut(s) 466
AseI ATTAAT 1 cut(s) 989
AspLEI GCGC 1 cut(s) 1071
AspS9I GGNCC 4 cut(s) 143, 407, 721, 1046
AsuHPI GGTGA 3 cut(s) 844, 845, 969
AvaII GGWCC 4 cut(s) 143, 407, 721, 1046
BalI TGGCCA 1 cut(s) 623
Bbv12I GWGCWC 1 cut(s) 1175
BbvI GCAGC 4 cut(s) 145, 284, 769, 1078
BccI CCATC 5 cut(s) 91, 208, 227, 449, 977
BcgI CGANNNNNNTGC 2 cut(s) 348, 382
BclI TGATCA 1 cut(s) 553
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 3 cut(s) 11, 435, 671
BfmI CTRYAG 4 cut(s) 534, 755, 828, 1064
BfoI RGCGCY 1 cut(s) 1072
BfrI CTTAAG 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 338
BisI GCNGC 6 cut(s) 134, 273, 758, 887, 1040, 1067
BlsI GCNGC 6 cut(s) 135, 274, 759, 888, 1041, 1068
Bme18I GGWCC 4 cut(s) 143, 407, 721, 1046
BmgT120I GGNCC 4 cut(s) 143, 407, 721, 1046
BmiI GGNNCC 2 cut(s) 807, 1005
BmsI GCATC 2 cut(s) 246, 520
BpmI CTGGAG 1 cut(s) 1051
BpuEI CTTGAG 2 cut(s) 229, 1124
BsaAI YACGTR 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 1251
BsaWI WCCGGW 1 cut(s) 865
Bsc4I CCNNNNNNNGG 2 cut(s) 416, 920
Bse1I ACTGG 3 cut(s) 731, 789, 1034
Bse3DI GCAATG 3 cut(s) 468, 1161, 1211
BseDI CCNNGG 1 cut(s) 1251
BseGI GGATG 5 cut(s) 177, 261, 793, 969, 1123
BseLI CCNNNNNNNGG 2 cut(s) 416, 920
BseMI GCAATG 3 cut(s) 468, 1161, 1211
BseMII CTCAG 3 cut(s) 179, 317, 604
BseNI ACTGG 3 cut(s) 731, 789, 1034
BseRI GAGGAG 2 cut(s) 252, 1014
BseXI GCAGC 4 cut(s) 145, 284, 769, 1078
BseYI CCCAGC 2 cut(s) 244, 710
BsgI GTGCAG 1 cut(s) 291
BshFI GGCC 1 cut(s) 623
BsiHKAI GWGCWC 1 cut(s) 1175
BsiSI CCGG 1 cut(s) 866
BslI CCNNNNNNNGG 2 cut(s) 416, 920
BsmAI GTCTC 1 cut(s) 301
BsmI GAATGC 2 cut(s) 359, 425
BsnI GGCC 1 cut(s) 623
Bsp1286I GDGCHC 1 cut(s) 1175
Bsp143I GATC 3 cut(s) 103, 553, 1081
BspACI CCGC 2 cut(s) 886, 1039
BspANI GGCC 1 cut(s) 623
BspCNI CTCAG 3 cut(s) 178, 316, 603
BspLI GGNNCC 2 cut(s) 807, 1005
BspMAI CTGCAG 2 cut(s) 759, 1068
BspMI ACCTGC 1 cut(s) 338
BspPI GGATC 2 cut(s) 111, 1089
BspQI GCTCTTC 2 cut(s) 177, 489
BspTI CTTAAG 1 cut(s) 188
BsrDI GCAATG 3 cut(s) 468, 1161, 1211
BsrI ACTGG 3 cut(s) 731, 789, 1034
BssECI CCNNGG 1 cut(s) 1251
BssMI GATC 3 cut(s) 103, 553, 1081
BssT1I CCWWGG 1 cut(s) 1251
Bst4CI ACNGT 4 cut(s) 269, 341, 502, 560
Bst6I CTCTTC 3 cut(s) 144, 177, 489
BstAFI CTTAAG 1 cut(s) 188
BstBAI YACGTR 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 293, 1128
BstDEI CTNAG 4 cut(s) 51, 165, 303, 590
BstEII GGTNACC 1 cut(s) 15
BstENI CCTNNNNNAGG 1 cut(s) 414
BstF5I GGATG 5 cut(s) 177, 261, 793, 969, 1123
BstH2I RGCGCY 1 cut(s) 1072
BstHHI GCGC 1 cut(s) 1071
BstKTI GATC 3 cut(s) 106, 556, 1084
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 3 cut(s) 103, 553, 1081
BstMWI GCNNNNNNNGC 1 cut(s) 895
BstNSI RCATGY 2 cut(s) 295, 929
BstPI GGTNACC 1 cut(s) 15
BstSFI CTRYAG 4 cut(s) 534, 755, 828, 1064
BstV1I GCAGC 4 cut(s) 145, 284, 769, 1078
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BsuRI GGCC 1 cut(s) 623
BtsCI GGATG 5 cut(s) 177, 261, 793, 969, 1123
BtsIMutI CAGTG 5 cut(s) 173, 274, 782, 1027, 1175
BveI ACCTGC 1 cut(s) 338
Cac8I GCNNGC 2 cut(s) 293, 1128
CfoI GCGC 1 cut(s) 1071
Cfr13I GGNCC 4 cut(s) 143, 407, 721, 1046
Csp6I GTAC 2 cut(s) 342, 632
CviAII CATG 9 cut(s) 121, 156, 292, 458, 638, 689, 926, 956, 1008
CviQI GTAC 2 cut(s) 342, 632
DdeI CTNAG 4 cut(s) 51, 165, 303, 590
DpnI GATC 3 cut(s) 105, 555, 1083
DpnII GATC 3 cut(s) 103, 553, 1081
EaeI YGGCCR 1 cut(s) 621
Eam1104I CTCTTC 3 cut(s) 144, 177, 489
EarI CTCTTC 3 cut(s) 144, 177, 489
Eco130I CCWWGG 1 cut(s) 1251
Eco47I GGWCC 4 cut(s) 143, 407, 721, 1046
Eco47III AGCGCT 1 cut(s) 1070
Eco57I CTGAAG 3 cut(s) 87, 168, 1151
Eco91I GGTNACC 1 cut(s) 15
EcoNI CCTNNNNNAGG 1 cut(s) 414
EcoO65I GGTNACC 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 1251
EcoT22I ATGCAT 1 cut(s) 1013
ErhI CCWWGG 1 cut(s) 1251
FaeI CATG 9 cut(s) 124, 159, 295, 461, 641, 692, 929, 959, 1011
FatI CATG 9 cut(s) 120, 155, 291, 457, 637, 688, 925, 955, 1007
FbaI TGATCA 1 cut(s) 553
FblI GTMKAC 1 cut(s) 739
Fnu4HI GCNGC 6 cut(s) 134, 273, 758, 887, 1040, 1067
FokI GGATG 5 cut(s) 184, 268, 800, 956, 1130
Fsp4HI GCNGC 6 cut(s) 134, 273, 758, 887, 1040, 1067
FspBI CTAG 3 cut(s) 11, 435, 671
GlaI GCGC 1 cut(s) 1070
GluI GCNGC 6 cut(s) 134, 273, 758, 887, 1040, 1067
GsaI CCCAGC 2 cut(s) 248, 714
GsuI CTGGAG 1 cut(s) 1051
HaeII RGCGCY 1 cut(s) 1072
HaeIII GGCC 1 cut(s) 623
HapII CCGG 1 cut(s) 866
HhaI GCGC 1 cut(s) 1071
Hin1II CATG 9 cut(s) 124, 159, 295, 461, 641, 692, 929, 959, 1011
Hin6I GCGC 1 cut(s) 1069
HinP1I GCGC 1 cut(s) 1069
HincII GTYRAC 1 cut(s) 740
HindII GTYRAC 1 cut(s) 740
HindIII AAGCTT 2 cut(s) 191, 950
HinfI GANTC 3 cut(s) 152, 698, 1033
HpaII CCGG 1 cut(s) 866
HphI GGTGA 3 cut(s) 844, 845, 969
Hpy166II GTNNAC 1 cut(s) 740
Hpy188I TCNGA 5 cut(s) 306, 514, 593, 666, 1086
Hpy188III TCNNGA 1 cut(s) 1103
Hpy8I GTNNAC 1 cut(s) 740
HpyAV CCTTC 4 cut(s) 277, 292, 796, 1153
HpyCH4III ACNGT 4 cut(s) 269, 341, 502, 560
HpyCH4IV ACGT 1 cut(s) 60
HpyF10VI GCNNNNNNNGC 1 cut(s) 895
HpyF3I CTNAG 4 cut(s) 51, 165, 303, 590
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 9 cut(s) 124, 159, 295, 461, 641, 692, 929, 959, 1011
HspAI GCGC 1 cut(s) 1069
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 3 cut(s) 103, 553, 1081
LguI GCTCTTC 2 cut(s) 177, 489
LmnI GCTCC 1 cut(s) 1003
Lsp1109I GCAGC 4 cut(s) 145, 284, 769, 1078
LweI GCATC 2 cut(s) 246, 520
MaeI CTAG 3 cut(s) 11, 435, 671
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 3 cut(s) 15, 61, 560
MalI GATC 3 cut(s) 105, 555, 1083
MboI GATC 3 cut(s) 103, 553, 1081
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 1175
MlsI TGGCCA 1 cut(s) 623
MluCI AATT 8 cut(s) 391, 420, 466, 747, 839, 983, 994, 1112
MluNI TGGCCA 1 cut(s) 623
MlyI GAGTC 2 cut(s) 161, 1042
MmeI TCCRAC 2 cut(s) 233, 596
MnlI CCTC 9 cut(s) 94, 174, 230, 316, 410, 649, 694, 937, 1035
Mox20I TGGCCA 1 cut(s) 623
Mph1103I ATGCAT 1 cut(s) 1013
MscI TGGCCA 1 cut(s) 623
MseI TTAA 3 cut(s) 189, 312, 989
MslI CAYNNNNRTG 1 cut(s) 642
Msp20I TGGCCA 1 cut(s) 623
MspA1I CMGCKG 2 cut(s) 760, 886
MspCI CTTAAG 1 cut(s) 188
MspI CCGG 1 cut(s) 866
Mva1269I GAATGC 2 cut(s) 359, 425
MwoI GCNNNNNNNGC 1 cut(s) 895
NdeII GATC 3 cut(s) 103, 553, 1081
NlaIII CATG 9 cut(s) 124, 159, 295, 461, 641, 692, 929, 959, 1011
NlaIV GGNNCC 2 cut(s) 807, 1005
NmuCI GTSAC 1 cut(s) 61
NsiI ATGCAT 1 cut(s) 1013
NspI RCATGY 2 cut(s) 295, 929
PaeI GCATGC 1 cut(s) 295
PciI ACATGT 1 cut(s) 925
PciSI GCTCTTC 2 cut(s) 177, 489
PctI GAATGC 2 cut(s) 359, 425
PfeI GAWTC 1 cut(s) 698
PflMI CCANNNNNTGG 1 cut(s) 920
PkrI GCNGC 6 cut(s) 135, 274, 759, 888, 1041, 1068
PleI GAGTC 2 cut(s) 160, 1041
PpsI GAGTC 2 cut(s) 160, 1041
Ppu21I YACGTR 1 cut(s) 61
PscI ACATGT 1 cut(s) 925
PshBI ATTAAT 1 cut(s) 989
PsiI TTATAA 1 cut(s) 353
PspEI GGTNACC 1 cut(s) 15
PspFI CCCAGC 2 cut(s) 244, 710
PspN4I GGNNCC 2 cut(s) 807, 1005
PspPI GGNCC 4 cut(s) 143, 407, 721, 1046
PstI CTGCAG 2 cut(s) 759, 1068
PsuI RGATCY 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 760
RsaI GTAC 2 cut(s) 343, 633
RsaNI GTAC 2 cut(s) 342, 632
RseI CAYNNNNRTG 1 cut(s) 642
SalI GTCGAC 1 cut(s) 738
SapI GCTCTTC 2 cut(s) 177, 489
SaqAI TTAA 3 cut(s) 189, 312, 989
SatI GCNGC 6 cut(s) 134, 273, 758, 887, 1040, 1067
Sau3AI GATC 3 cut(s) 103, 553, 1081
Sau96I GGNCC 4 cut(s) 143, 407, 721, 1046
SchI GAGTC 2 cut(s) 161, 1042
SduI GDGCHC 1 cut(s) 1175
SfaNI GCATC 2 cut(s) 246, 520
SfcI CTRYAG 4 cut(s) 534, 755, 828, 1064
SinI GGWCC 4 cut(s) 143, 407, 721, 1046
SmiMI CAYNNNNRTG 1 cut(s) 642
SmlI CTYRAG 3 cut(s) 188, 208, 1103
SmoI CTYRAG 3 cut(s) 188, 208, 1103
SphI GCATGC 1 cut(s) 295
Sse9I AATT 8 cut(s) 391, 420, 466, 747, 839, 983, 994, 1112
SsiI CCGC 2 cut(s) 886, 1039
SspMI CTAG 3 cut(s) 11, 435, 671
StyI CCWWGG 1 cut(s) 1251
TaaI ACNGT 4 cut(s) 269, 341, 502, 560
TaiI ACGT 1 cut(s) 63
TaqI TCGA 3 cut(s) 31, 739, 930
TaqII GACCGA 1 cut(s) 709
TasI AATT 8 cut(s) 391, 420, 466, 747, 839, 983, 994, 1112
TatI WGTACW 1 cut(s) 341
TauI GCSGC 2 cut(s) 889, 1042
TfiI GAWTC 1 cut(s) 698
Tru1I TTAA 3 cut(s) 189, 312, 989
Tru9I TTAA 3 cut(s) 189, 312, 989
TscAI CASTG 5 cut(s) 173, 274, 789, 1034, 1175
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 4 cut(s) 133, 272, 757, 1066
Tsp45I GTSAC 1 cut(s) 61
TspRI CASTG 5 cut(s) 173, 274, 789, 1034, 1175
Van91I CCANNNNNTGG 1 cut(s) 920
Vha464I CTTAAG 1 cut(s) 188
VpaK11BI GGWCC 4 cut(s) 143, 407, 721, 1046
VspI ATTAAT 1 cut(s) 989
XagI CCTNNNNNAGG 1 cut(s) 414
XapI RAATTY 1 cut(s) 466
XceI RCATGY 2 cut(s) 295, 929
XmiI GTMKAC 1 cut(s) 739
XspI CTAG 3 cut(s) 11, 435, 671
Zsp2I ATGCAT 1 cut(s) 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.