Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002505

Physical Location & Seq

Genomic Coordinates Reverse (-)

60678453 .. 60684406

Gene Structure 5954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00327830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGCACATGGAAATCAGGCAGCTTTTTGGACCTGAAGAGTCATGTATTCCTCAGTGGATGAAGTGGGAAGAGCTTAAGCTTCTACCATCTTCCTTGAGAGATGTAGCTTTAGGCAAAGATGGAGGAGAGCTGGGTAGTTGGATGCCCTTATACAGTGCAGCAGATGTGAAGGATTGCATGAAGAAGGCTCAGAGACTTAAATATGCAGAGGAAACCTGCTACAACAGTACATTGATTATAAAGGCATTCAGTTCAGGTTTGGAAATAGGTACTTGTAATTGGACAATAAATGGTCCTAAAGGAGGAATTGCGTTCATATCTAGTTCCATCTTCGGTTCCGCTCATGCAATGAATTTTGATTATATTGCTCTTCAAGGGAATGATACTGTAATATATTCGGATTTTTCTTCCTTGGATGCTTCAGAAGATATTGAGAATGATCACAGTAACTTCGTTCCAACTACACATGATTTTTCATCTCTCAGAAATGAAGAAAATGATGAACTAGAGTTGGCCAAGTCGGTACTTCATGTTGATGATAATATGGAGGAAAATCAGAAACTAGCTTTTTTGTCCTCCCATGTCATTGATTCTGTAAAAGCTGGGGTTCGGTCCTTATTCCAGTTGGTCGACTTGGAATTGTTCTGCAGCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

Beta-Casp Lactamase_B_6

Protein Analysis

218

Amino Acids

24.34

Weight (kDa)

4.59

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07530 AT3G07530 AT3G07530 AT3G07530 AT3G07530
fragaria_vesca	FvH4_7g02620 FvH4_7g02620
malus_domestica	MD00G1214500.v1.1
prunus_persica	Prupe.2G031500_v2.0.a1 Prupe.2G031500_v2.0.a1 Prupe.2G031500_v2.0.a1 Prupe.2G031500_v2.0.a1 Prupe.2G031500_v2.0.a1 Prupe.2G031500_v2.0.a1 Prupe.2G031500_v2.0.a1 Prupe.2G031500_v2.0.a1 Prupe.2G031500_v2.0.a1 Prupe.2G031500_v2.0.a1 Prupe.2G031500_v2.0.a1 Prupe.2G031500_v2.0.a1 Prupe.2G031500_v2.0.a1 Prupe.2G031500_v2.0.a1 Prupe.2G031500_v2.0.a1 Prupe.2G031500_v2.0.a1 Prupe.2G031500_v2.0.a1 Prupe.2G031500_v2.0.a1 Prupe.2G031500_v2.0.a1 Prupe.2G031500_v2.0.a1
pyrus_communis	pycom07g02470
rosa_chinensis	RchiOBHm_Chr1g0321321
rosa_laevigata	RLG00000030429
rosa_multiflora	Rmu_sc0000724.1_g000004 Rmu_sc0000960.1_g000012
rosa_roxburghii	Rroxscaffold_160G00433950 Rroxscaffold_4G00327830
rosa_rugosa	Rorug01G0032000
rosa_samantha	Rh1AG044200 Rh1BG041900 Rh1CG046900 Rh1DG051400
rosa_wichuraiana	Rw1G003910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
Acc36I	ACCTGC	1 cut(s)	224
AccBSI	CCGCTC	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	630
AciI	CCGC	1 cut(s)	339
AcoI	YGGCCR	1 cut(s)	513
AcsI	RAATTY	1 cut(s)	352
AcuI	CTGAAG	2 cut(s)	54, 405
AfaI	GTAC	3 cut(s)	229, 271, 525
AfiI	CCNNNNNNNGG	1 cut(s)	302
AflII	CTTAAG	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	374
AluBI	AGCT	8 cut(s)	22, 73, 79, 107, 130, 566, 602, 651
AluI	AGCT	8 cut(s)	22, 73, 79, 107, 130, 566, 602, 651
Alw26I	GTCTC	1 cut(s)	187
AoxI	GGCC	1 cut(s)	513
ApeKI	GCWGC	3 cut(s)	19, 158, 648
ApoI	RAATTY	1 cut(s)	352
AspS9I	GGNCC	3 cut(s)	29, 293, 612
AvaII	GGWCC	3 cut(s)	29, 293, 612
BalI	TGGCCA	1 cut(s)	515
BbvI	GCAGC	2 cut(s)	31, 170
BccI	CCATC	3 cut(s)	94, 113, 335
BclI	TGATCA	1 cut(s)	439
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	3 cut(s)	321, 506, 563
BfmI	CTRYAG	1 cut(s)	646
BfrI	CTTAAG	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	224
BisI	GCNGC	3 cut(s)	20, 159, 649
BlsI	GCNGC	3 cut(s)	21, 160, 650
Bme18I	GGWCC	3 cut(s)	29, 293, 612
BmgT120I	GGNCC	3 cut(s)	29, 293, 612
BmiI	GGNNCC	1 cut(s)	337
BmsI	GCATC	2 cut(s)	132, 406
BpuEI	CTTGAG	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	622
Bse3DI	GCAATG	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	3 cut(s)	63, 147, 421
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	3 cut(s)	65, 203, 496
BseNI	ACTGG	1 cut(s)	622
BseRI	GAGGAG	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	31, 170
BseYI	CCCAGC	2 cut(s)	130, 602
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	515
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmAI	GTCTC	1 cut(s)	187
BsmI	GAATGC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	515
Bsp143I	GATC	1 cut(s)	439
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	1 cut(s)	515
BspCNI	CTCAG	3 cut(s)	64, 202, 495
BspLI	GGNNCC	1 cut(s)	337
BspMAI	CTGCAG	1 cut(s)	650
BspMI	ACCTGC	1 cut(s)	224
BspQI	GCTCTTC	2 cut(s)	63, 375
BspTI	CTTAAG	1 cut(s)	74
BsrBI	CCGCTC	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	622
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	1 cut(s)	439
BssT1I	CCWWGG	1 cut(s)	411
Bst4CI	ACNGT	4 cut(s)	155, 227, 388, 446
Bst6I	CTCTTC	3 cut(s)	30, 63, 375
BstAFI	CTTAAG	1 cut(s)	74
BstDEI	CTNAG	3 cut(s)	51, 189, 482
BstENI	CCTNNNNNAGG	1 cut(s)	300
BstF5I	GGATG	3 cut(s)	63, 147, 421
BstKTI	GATC	1 cut(s)	442
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	439
BstSFI	CTRYAG	1 cut(s)	646
BstV1I	GCAGC	2 cut(s)	31, 170
BsuRI	GGCC	1 cut(s)	515
BtsCI	GGATG	3 cut(s)	63, 147, 421
BtsIMutI	CAGTG	2 cut(s)	59, 160
BveI	ACCTGC	1 cut(s)	224
Cfr13I	GGNCC	3 cut(s)	29, 293, 612
Csp6I	GTAC	3 cut(s)	228, 270, 524
CviAII	CATG	7 cut(s)	7, 42, 178, 344, 467, 530, 581
CviQI	GTAC	3 cut(s)	228, 270, 524
DdeI	CTNAG	3 cut(s)	51, 189, 482
DpnI	GATC	1 cut(s)	441
DpnII	GATC	1 cut(s)	439
EaeI	YGGCCR	1 cut(s)	513
Eam1104I	CTCTTC	3 cut(s)	30, 63, 375
EarI	CTCTTC	3 cut(s)	30, 63, 375
Eco130I	CCWWGG	1 cut(s)	411
Eco47I	GGWCC	3 cut(s)	29, 293, 612
Eco57I	CTGAAG	2 cut(s)	54, 405
EcoNI	CCTNNNNNAGG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	7 cut(s)	10, 45, 181, 347, 470, 533, 584
FatI	CATG	7 cut(s)	6, 41, 177, 343, 466, 529, 580
FbaI	TGATCA	1 cut(s)	439
FblI	GTMKAC	1 cut(s)	630
Fnu4HI	GCNGC	3 cut(s)	20, 159, 649
FokI	GGATG	3 cut(s)	70, 154, 428
Fsp4HI	GCNGC	3 cut(s)	20, 159, 649
FspBI	CTAG	3 cut(s)	321, 506, 563
GluI	GCNGC	3 cut(s)	20, 159, 649
GsaI	CCCAGC	2 cut(s)	134, 606
HaeIII	GGCC	1 cut(s)	515
Hin1II	CATG	7 cut(s)	10, 45, 181, 347, 470, 533, 584
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	2 cut(s)	38, 590
Hpy166II	GTNNAC	1 cut(s)	631
Hpy188I	TCNGA	5 cut(s)	192, 400, 424, 485, 558
Hpy8I	GTNNAC	1 cut(s)	631
HpyAV	CCTTC	2 cut(s)	163, 178
HpyCH4III	ACNGT	4 cut(s)	155, 227, 388, 446
HpyCH4V	TGCA	6 cut(s)	4, 158, 177, 206, 347, 648
HpyF3I	CTNAG	3 cut(s)	51, 189, 482
Hsp92II	CATG	7 cut(s)	10, 45, 181, 347, 470, 533, 584
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	1 cut(s)	439
LguI	GCTCTTC	2 cut(s)	63, 375
LpnPI	CCDG	6 cut(s)	45, 116, 229, 240, 588, 635
Lsp1109I	GCAGC	2 cut(s)	31, 170
LweI	GCATC	2 cut(s)	132, 406
MaeI	CTAG	3 cut(s)	321, 506, 563
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	1 cut(s)	441
MbiI	CCGCTC	1 cut(s)	341
MboI	GATC	1 cut(s)	439
MboII	GAAGA	9 cut(s)	47, 80, 81, 193, 322, 362, 399, 437, 503
MlsI	TGGCCA	1 cut(s)	515
MluCI	AATT	4 cut(s)	277, 306, 352, 638
MluNI	TGGCCA	1 cut(s)	515
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	2 cut(s)	119, 482
MnlI	CCTC	6 cut(s)	60, 116, 202, 296, 541, 586
Mox20I	TGGCCA	1 cut(s)	515
MscI	TGGCCA	1 cut(s)	515
MseI	TTAA	2 cut(s)	75, 198
MslI	CAYNNNNRTG	1 cut(s)	534
Msp20I	TGGCCA	1 cut(s)	515
MspA1I	CMGCKG	1 cut(s)	651
MspCI	CTTAAG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	245
NdeII	GATC	1 cut(s)	439
NlaIII	CATG	7 cut(s)	10, 45, 181, 347, 470, 533, 584
NlaIV	GGNNCC	1 cut(s)	337
PciSI	GCTCTTC	2 cut(s)	63, 375
PctI	GAATGC	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	590
PkrI	GCNGC	3 cut(s)	21, 160, 650
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PsiI	TTATAA	1 cut(s)	239
PspFI	CCCAGC	2 cut(s)	130, 602
PspN4I	GGNNCC	1 cut(s)	337
PspPI	GGNCC	3 cut(s)	29, 293, 612
PstI	CTGCAG	1 cut(s)	650
PvuII	CAGCTG	1 cut(s)	651
RsaI	GTAC	3 cut(s)	229, 271, 525
RsaNI	GTAC	3 cut(s)	228, 270, 524
RseI	CAYNNNNRTG	1 cut(s)	534
SalI	GTCGAC	1 cut(s)	629
SapI	GCTCTTC	2 cut(s)	63, 375
SaqAI	TTAA	2 cut(s)	75, 198
SatI	GCNGC	3 cut(s)	20, 159, 649
Sau3AI	GATC	1 cut(s)	439
Sau96I	GGNCC	3 cut(s)	29, 293, 612
SchI	GAGTC	1 cut(s)	47
SfaNI	GCATC	2 cut(s)	132, 406
SfcI	CTRYAG	1 cut(s)	646
SinI	GGWCC	3 cut(s)	29, 293, 612
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	2 cut(s)	74, 94
SmoI	CTYRAG	2 cut(s)	74, 94
Sse9I	AATT	4 cut(s)	277, 306, 352, 638
SsiI	CCGC	1 cut(s)	339
SspMI	CTAG	3 cut(s)	321, 506, 563
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	4 cut(s)	155, 227, 388, 446
TaqI	TCGA	1 cut(s)	630
TaqII	GACCGA	1 cut(s)	600
TasI	AATT	4 cut(s)	277, 306, 352, 638
TatI	WGTACW	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	590
Tru1I	TTAA	2 cut(s)	75, 198
Tru9I	TTAA	2 cut(s)	75, 198
TscAI	CASTG	2 cut(s)	59, 160
TseI	GCWGC	3 cut(s)	19, 158, 648
TspDTI	ATGAA	8 cut(s)	74, 194, 304, 365, 465, 504, 516, 518
TspRI	CASTG	2 cut(s)	59, 160
Vha464I	CTTAAG	1 cut(s)	74
VpaK11BI	GGWCC	3 cut(s)	29, 293, 612
XagI	CCTNNNNNAGG	1 cut(s)	300
XapI	RAATTY	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	630
XspI	CTAG	3 cut(s)	321, 506, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.