Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0012877

Physical Location & Seq

Genomic Coordinates Reverse (-)

23339099 .. 23339455

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1119500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGATGCTCTCCGACACCCCGAAGAGTGGTTGTACTAGTTCAAAACCTTCCCATATCTCTTCTCTATCGACGATGAAGAAAACATTGAAAACGCTATCCATCGTCACCAAATGGGAACCAAACTCCTCCAGATACACTAAACCCACGTCTATCTTCCAGAGTAGCAGGAAAGAGGCCAAACAGCTTCTCAAATCCGTGAAGAACTTGCGCAGTGCTACGCATGTTCTGGTTCGTGAAAGCTGTCCATCCGGCAACCTCGTGCTTGCCCAAAACCTAAAGCAAACGGCTATGAAAAAGCTTGAAAGGGAGTTTATGAGACATTGTCTGCAAACCCCGATCACCTTGACCCTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0001505 GO:0002237 GO:0002831 GO:0002833 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005938 GO:0006810 GO:0006836 GO:0006887 GO:0006903 GO:0006904 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0008013 GO:0008150 GO:0008289 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0010033 GO:0016079 GO:0016080 GO:0016081 GO:0016192 GO:0017156 GO:0022406 GO:0023052 GO:0023061 GO:0031347 GO:0031349 GO:0031982 GO:0032101 GO:0032103 GO:0032940 GO:0032991 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0045055 GO:0046903 GO:0046907 GO:0048278 GO:0048489 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071944 GO:0080134 GO:0097479 GO:0097480 GO:0098916 GO:0099003 GO:0099023 GO:0099504 GO:0099536 GO:0099537 GO:0099568 GO:0099643 GO:0140029 GO:0140056 GO:1900424 GO:1900426 GO:1901981 GO:1902936

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

119

Amino Acids

13.25

Weight (kDa)

10.3

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo70_N	PF20669	33 - 105	2.3e-10	Exocyst complex component Exo70 N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39380 AT3G55150
fragaria_vesca	FvH4_7g20950
malus_domestica	MD01G1119500.v1.1 MD07G1188300.v1.1 MD07G1188500.v1.1
prunus_persica	Prupe.2G226200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365301
rosa_laevigata	RLG00000027432
rosa_multiflora	Rmu_sc0004695.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291320 Rroxscaffold_4G00291860
rosa_rugosa	Rorug01G0321100
rosa_samantha	Rh1AG329800 Rh1BG291300 Rh1CG308000 Rh1DG323000
rosa_wichuraiana	Rw1G029240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	209
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	3 cut(s)	42, 88, 302
AhlI	ACTAGT	1 cut(s)	35
AjiI	CACGTC	1 cut(s)	147
AluBI	AGCT	3 cut(s)	184, 240, 298
AluI	AGCT	3 cut(s)	184, 240, 298
Alw26I	GTCTC	1 cut(s)	310
AoxI	GGCC	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	210
AsuHPI	GGTGA	2 cut(s)	97, 331
BauI	CACGAG	1 cut(s)	257
BccI	CCATC	2 cut(s)	107, 253
BceAI	ACGGC	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	310
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	1 cut(s)	36
BmgBI	CACGTC	1 cut(s)	147
BmiI	GGNNCC	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	245
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseRI	GAGGAG	1 cut(s)	115
BshFI	GGCC	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	336
BspANI	GGCC	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	117
BssMI	GATC	1 cut(s)	336
BssSI	CACGAG	1 cut(s)	257
Bst2BI	CACGAG	1 cut(s)	257
Bst6I	CTCTTC	2 cut(s)	17, 64
BstC8I	GCNNGC	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	1 cut(s)	339
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	1 cut(s)	336
BstNSI	RCATGY	1 cut(s)	224
BsuRI	GGCC	1 cut(s)	176
BtrI	CACGTC	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	245
BtsI	GCAGTG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	264
CfoI	GCGC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	5 cut(s)	176, 184, 240, 287, 298
CviKI_1	RGCY	5 cut(s)	176, 184, 240, 287, 298
CviQI	GTAC	1 cut(s)	33
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
Eam1104I	CTCTTC	2 cut(s)	17, 64
EarI	CTCTTC	2 cut(s)	17, 64
FaeI	CATG	1 cut(s)	224
FaiI	YATR	4 cut(s)	54, 222, 290, 314
FatI	CATG	1 cut(s)	220
FokI	GGATG	1 cut(s)	232
FspBI	CTAG	1 cut(s)	36
FspI	TGCGCA	1 cut(s)	209
GlaI	GCGC	1 cut(s)	209
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	1 cut(s)	249
HhaI	GCGC	1 cut(s)	210
Hin1II	CATG	1 cut(s)	224
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HindIII	AAGCTT	1 cut(s)	296
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	2 cut(s)	97, 331
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	3 cut(s)	129, 157, 233
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	57
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	1 cut(s)	328
HpySE526I	ACGT	1 cut(s)	146
Hsp92II	CATG	1 cut(s)	224
HspAI	GCGC	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	336
LpnPI	CCDG	5 cut(s)	142, 151, 170, 212, 262
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	5 cut(s)	34, 51, 88, 145, 211
MluCI	AATT	1 cut(s)	352
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	3 cut(s)	136, 166, 266
MspI	CCGG	1 cut(s)	249
NdeII	GATC	1 cut(s)	336
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	103
NsbI	TGCGCA	1 cut(s)	209
NspI	RCATGY	1 cut(s)	224
PflFI	GACNNNGTC	1 cut(s)	321
PspN4I	GGNNCC	1 cut(s)	117
PsyI	GACNNNGTC	1 cut(s)	321
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	336
SetI	ASST	8 cut(s)	49, 149, 186, 242, 258, 276, 300, 344
SpeI	ACTAGT	1 cut(s)	35
Sse9I	AATT	1 cut(s)	352
SspMI	CTAG	1 cut(s)	36
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	1 cut(s)	68
TasI	AATT	1 cut(s)	352
TatI	WGTACW	1 cut(s)	32
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	2 cut(s)	89, 305
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	1 cut(s)	217
Tth111I	GACNNNGTC	1 cut(s)	321
XceI	RCATGY	1 cut(s)	224
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.