Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0012877

Physical Location & Seq

Genomic Coordinates Reverse (-)

26870950 .. 26872010

Gene Structure 1061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1188300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGATGCTCTCCGAGTACCTGAAGAGTGGTAGTACTACACTCACACCAAGGAAAGGAATGTCATGCCTCTTTTCCTTCTCGCATGTCAAAAACCATTCTTCTTACACACCTTCAAGCACTTCCACCGGTCCAAAACCTTCCCCGACCTTGTCTCTTTCGATGATGGAGGAAAACATCGAAACAGCTGAATTCATCATCACGAAATGGGATCCAAACTCCTCCTCATACACCAAACTCACGTCTATCTTCCAGAGTAGCAGAAAAGAGGCCAAACAGCTTCTCAAATCCGTAAAGGACTTGCGTAGTGCTATGCATGTTTTGGTTCATGAAAGCTCTCCATCCAGCAAGCTCGTGCTTGCTCAAAACCTAATGCAAACAGCTATGAAAAGGCTTGAAAGGGAGTTTTATGAGATATTGTCTGCAAACCGGCGTCACCTTGACCCTGAATCAGTTTCAAGTCGAACCTCAATCGGATCATGCACATTTAATGGTGAAGACGAGGGTGGATCAGAAGAGTTGGAAATTGTTGGTGGGTCGATCACTGAGGTGGAGAGGGTCTCGGCTCTCGCCATGGCGGATCTGAAGTCCATAGCAGATTGTATGATCAGTTCCGGCTATGGTCATGAGTGTGTGAAGATATACAAAGTTATCCGAAAGTCAATAGTAGATGAGGGATTGTATCGCCTTGGAATCCAACAGTTCAAGTCTTCCCAAATCCATAAAATGGATTCGGAAGGACTAGAAAACATAATCATGAACTGGATGGATGCTGCGAAGATTGCTGTGAAAGCACTATTTCATGGAGAAAAAGTTCTCTGTGATCATGTGTTTTCAGCATCTGAGACAATCGCAGACTCATGCTTCTATGAGATAACAAAAGGAGGAGCAACCACCCTATTCAGATTTCCGGAACTCATAGTGAAGAACAAGAAATTGAATCAATATTTACCTCTGCATCAACCCAAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0001505 GO:0002237 GO:0002831 GO:0002833 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005938 GO:0006810 GO:0006836 GO:0006887 GO:0006903 GO:0006904 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0008013 GO:0008150 GO:0008289 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0010033 GO:0016079 GO:0016080 GO:0016081 GO:0016192 GO:0017156 GO:0022406 GO:0023052 GO:0023061 GO:0031347 GO:0031349 GO:0031982 GO:0032101 GO:0032103 GO:0032940 GO:0032991 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0045055 GO:0046903 GO:0046907 GO:0048278 GO:0048489 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071944 GO:0080134 GO:0097479 GO:0097480 GO:0098916 GO:0099003 GO:0099023 GO:0099504 GO:0099536 GO:0099537 GO:0099568 GO:0099643 GO:0140029 GO:0140056 GO:1900424 GO:1900426 GO:1901981 GO:1902936

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

324

Amino Acids

36.02

Weight (kDa)

7.65

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo70_N	PF20669	59 - 140	3.3e-17	Exocyst complex component Exo70 N-terminal
Exo70_C	PF03081	253 - 316	1.3e-12	Exo70 exocyst complex subunit C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39380 AT3G55150
fragaria_vesca	FvH4_7g20950
malus_domestica	MD01G1119500.v1.1 MD07G1188300.v1.1 MD07G1188500.v1.1
prunus_persica	Prupe.2G226200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365301
rosa_laevigata	RLG00000027432
rosa_multiflora	Rmu_sc0004695.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291320 Rroxscaffold_4G00291860
rosa_rugosa	Rorug01G0321100
rosa_samantha	Rh1AG329800 Rh1BG291300 Rh1CG308000 Rh1DG323000
rosa_wichuraiana	Rw1G029240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	724
AccIII	TCCGGA	1 cut(s)	907
AciI	CCGC	1 cut(s)	575
AclWI	GGATC	5 cut(s)	203, 216, 481, 514, 585
AcsI	RAATTY	1 cut(s)	188
AcuI	CTGAAG	2 cut(s)	41, 602
AcyI	GRCGYC	1 cut(s)	430
AfaI	GTAC	2 cut(s)	17, 34
AfiI	CCNNNNNNNGG	2 cut(s)	53, 724
AgeI	ACCGGT	1 cut(s)	125
AgsI	TTSAA	5 cut(s)	114, 395, 456, 703, 937
AjiI	CACGTC	1 cut(s)	240
AleI	CACNNNNGTG	1 cut(s)	545
AloI	GAACNNNNNNTCC	2 cut(s)	795, 827
AluBI	AGCT	5 cut(s)	185, 277, 333, 349, 380
AluI	AGCT	5 cut(s)	185, 277, 333, 349, 380
Alw26I	GTCTC	3 cut(s)	156, 562, 836
AlwI	GGATC	5 cut(s)	203, 216, 481, 514, 585
AlwNI	CAGNNNCTG	1 cut(s)	839
Aor13HI	TCCGGA	1 cut(s)	907
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	770
ApoI	RAATTY	1 cut(s)	188
AsiGI	ACCGGT	1 cut(s)	125
Asp700I	GAANNNNTTC	1 cut(s)	810
AspS9I	GGNCC	1 cut(s)	128
AsuHPI	GGTGA	2 cut(s)	425, 503
AvaII	GGWCC	1 cut(s)	128
BamHI	GGATCC	1 cut(s)	208
BauI	CACGAG	1 cut(s)	350
BbsI	GAAGAC	2 cut(s)	501, 699
BbvI	GCAGC	1 cut(s)	757
BccI	CCATC	3 cut(s)	157, 346, 757
BclI	TGATCA	2 cut(s)	603, 820
BcoDI	GTCTC	3 cut(s)	156, 562, 836
BfaI	CTAG	1 cut(s)	740
BisI	GCNGC	1 cut(s)	771
BlsI	GCNGC	1 cut(s)	772
BmcAI	AGTACT	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	128
BmgBI	CACGTC	1 cut(s)	240
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	210
BmsI	GCATC	3 cut(s)	757, 845, 964
BpiI	GAAGAC	2 cut(s)	501, 699
BplI	GAGNNNNNCTC	2 cut(s)	542, 574
BsaHI	GRCGYC	1 cut(s)	430
BsaI	GGTCTC	1 cut(s)	562
BsaJI	CCNNGG	3 cut(s)	47, 570, 685
BsaWI	WCCGGW	2 cut(s)	125, 907
BsaXI	ACNNNNNCTCC	2 cut(s)	795, 825
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 724
Bse118I	RCCGGY	2 cut(s)	125, 426
Bse1I	ACTGG	1 cut(s)	764
BseAI	TCCGGA	1 cut(s)	907
BseDI	CCNNGG	3 cut(s)	47, 570, 685
BseGI	GGATG	3 cut(s)	338, 768, 772
BseLI	CCNNNNNNNGG	2 cut(s)	53, 724
BseMII	CTCAG	2 cut(s)	534, 831
BseNI	ACTGG	1 cut(s)	764
BseRI	GAGGAG	3 cut(s)	208, 211, 897
BseXI	GCAGC	1 cut(s)	757
BshFI	GGCC	1 cut(s)	269
BshTI	ACCGGT	1 cut(s)	125
BsiSI	CCGG	4 cut(s)	126, 427, 612, 908
BslI	CCNNNNNNNGG	2 cut(s)	53, 724
BsmAI	GTCTC	3 cut(s)	156, 562, 836
BsnI	GGCC	1 cut(s)	269
Bso31I	GGTCTC	1 cut(s)	562
Bsp13I	TCCGGA	1 cut(s)	907
Bsp143I	GATC	7 cut(s)	208, 473, 506, 537, 577, 603, 820
Bsp19I	CCATGG	1 cut(s)	570
BspACI	CCGC	1 cut(s)	575
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	2 cut(s)	535, 832
BspEI	TCCGGA	1 cut(s)	907
BspHI	TCATGA	3 cut(s)	325, 622, 753
BspLI	GGNNCC	1 cut(s)	210
BspPI	GGATC	5 cut(s)	203, 216, 481, 514, 585
BspTNI	GGTCTC	1 cut(s)	562
BsrFI	RCCGGY	2 cut(s)	125, 426
BsrI	ACTGG	1 cut(s)	764
BssAI	RCCGGY	2 cut(s)	125, 426
BssECI	CCNNGG	3 cut(s)	47, 570, 685
BssMI	GATC	7 cut(s)	208, 473, 506, 537, 577, 603, 820
BssNI	GRCGYC	1 cut(s)	430
BssSI	CACGAG	1 cut(s)	350
BssT1I	CCWWGG	3 cut(s)	47, 570, 685
Bst2BI	CACGAG	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	699
Bst6I	CTCTTC	2 cut(s)	17, 507
BstACI	GRCGYC	1 cut(s)	430
BstC8I	GCNNGC	2 cut(s)	347, 357
BstDEI	CTNAG	2 cut(s)	543, 840
BstDSI	CCRYGG	1 cut(s)	570
BstF5I	GGATG	3 cut(s)	338, 768, 772
BstKTI	GATC	7 cut(s)	211, 476, 509, 540, 580, 606, 823
BstMAI	GTCTC	3 cut(s)	156, 562, 836
BstMBI	GATC	7 cut(s)	208, 473, 506, 537, 577, 603, 820
BstMWI	GCNNNNNNNGC	2 cut(s)	779, 788
BstNSI	RCATGY	2 cut(s)	86, 317
BstV1I	GCAGC	1 cut(s)	757
BstV2I	GAAGAC	2 cut(s)	501, 699
BstX2I	RGATCY	2 cut(s)	208, 577
BstYI	RGATCY	2 cut(s)	208, 577
BsuRI	GGCC	1 cut(s)	269
BtgI	CCRYGG	1 cut(s)	570
BtrI	CACGTC	1 cut(s)	240
BtsCI	GGATG	3 cut(s)	338, 768, 772
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	2 cut(s)	347, 357
CaiI	CAGNNNCTG	1 cut(s)	839
CciI	TCATGA	3 cut(s)	325, 622, 753
Cfr10I	RCCGGY	2 cut(s)	125, 426
Cfr13I	GGNCC	1 cut(s)	128
CseI	GACGC	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	16, 33
CspAI	ACCGGT	1 cut(s)	125
CviJI	RGCY	9 cut(s)	185, 269, 277, 333, 349, 380, 391, 563, 615
CviKI_1	RGCY	9 cut(s)	185, 269, 277, 333, 349, 380, 391, 563, 615
CviQI	GTAC	2 cut(s)	16, 33
DdeI	CTNAG	2 cut(s)	543, 840
DpnI	GATC	7 cut(s)	210, 475, 508, 539, 579, 605, 822
DpnII	GATC	7 cut(s)	208, 473, 506, 537, 577, 603, 820
Eam1104I	CTCTTC	2 cut(s)	17, 507
EarI	CTCTTC	2 cut(s)	17, 507
EciI	GGCGGA	1 cut(s)	590
Eco130I	CCWWGG	3 cut(s)	47, 570, 685
Eco31I	GGTCTC	1 cut(s)	562
Eco47I	GGWCC	1 cut(s)	128
Eco57I	CTGAAG	2 cut(s)	41, 602
EcoRI	GAATTC	1 cut(s)	188
EcoT14I	CCWWGG	3 cut(s)	47, 570, 685
EcoT22I	ATGCAT	1 cut(s)	315
ErhI	CCWWGG	3 cut(s)	47, 570, 685
FbaI	TGATCA	2 cut(s)	603, 820
Fnu4HI	GCNGC	1 cut(s)	771
FokI	GGATG	3 cut(s)	325, 775, 779
Fsp4HI	GCNGC	1 cut(s)	771
FspBI	CTAG	1 cut(s)	740
GluI	GCNGC	1 cut(s)	771
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	4 cut(s)	126, 427, 612, 908
HgaI	GACGC	1 cut(s)	419
Hin1I	GRCGYC	1 cut(s)	430
HinfI	GANTC	5 cut(s)	446, 690, 728, 854, 937
HpaII	CCGG	4 cut(s)	126, 427, 612, 908
HphI	GGTGA	2 cut(s)	425, 503
Hpy188I	TCNGA	8 cut(s)	13, 473, 511, 582, 653, 733, 841, 902
Hpy188III	TCNNGA	6 cut(s)	199, 250, 326, 623, 754, 908
HpyAV	CCTTC	4 cut(s)	85, 120, 147, 728
HpyCH4III	ACNGT	1 cut(s)	699
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	5 cut(s)	313, 373, 422, 480, 955
HpyF10VI	GCNNNNNNNGC	2 cut(s)	779, 788
HpyF3I	CTNAG	2 cut(s)	543, 840
HpySE526I	ACGT	1 cut(s)	239
Hsp92I	GRCGYC	1 cut(s)	430
Kpn2I	TCCGGA	1 cut(s)	907
Ksp22I	TGATCA	2 cut(s)	603, 820
Kzo9I	GATC	7 cut(s)	208, 473, 506, 537, 577, 603, 820
LmnI	GCTCC	1 cut(s)	884
LpnPI	CCDG	9 cut(s)	32, 139, 263, 355, 440, 456, 625, 745, 921
Lsp1109I	GCAGC	1 cut(s)	757
LweI	GCATC	3 cut(s)	757, 845, 964
MaeI	CTAG	1 cut(s)	740
MaeII	ACGT	1 cut(s)	239
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	7 cut(s)	210, 475, 508, 539, 579, 605, 822
MboI	GATC	7 cut(s)	208, 473, 506, 537, 577, 603, 820
MboII	GAAGA	9 cut(s)	34, 90, 238, 506, 524, 646, 699, 787, 934
MflI	RGATCY	2 cut(s)	208, 577
MluCI	AATT	3 cut(s)	188, 522, 932
MlyI	GAGTC	1 cut(s)	848
MmeI	TCCRAC	2 cut(s)	498, 718
Mph1103I	ATGCAT	1 cut(s)	315
MroI	TCCGGA	1 cut(s)	907
MroXI	GAANNNNTTC	1 cut(s)	810
MseI	TTAA	1 cut(s)	486
MslI	CAYNNNNRTG	3 cut(s)	545, 627, 752
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	4 cut(s)	126, 427, 612, 908
MwoI	GCNNNNNNNGC	2 cut(s)	779, 788
NcoI	CCATGG	1 cut(s)	570
NdeII	GATC	7 cut(s)	208, 473, 506, 537, 577, 603, 820
NlaIV	GGNNCC	1 cut(s)	210
NmeAIII	GCCGAG	1 cut(s)	539
NmuCI	GTSAC	1 cut(s)	431
NsiI	ATGCAT	1 cut(s)	315
NspI	RCATGY	2 cut(s)	86, 317
OliI	CACNNNNGTG	1 cut(s)	545
PagI	TCATGA	3 cut(s)	325, 622, 753
PdmI	GAANNNNTTC	1 cut(s)	810
PfeI	GAWTC	4 cut(s)	446, 690, 728, 937
PflFI	GACNNNGTC	1 cut(s)	148
PflMI	CCANNNNNTGG	1 cut(s)	724
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	772
PleI	GAGTC	1 cut(s)	848
PpsI	GAGTC	1 cut(s)	848
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	128
PsrI	GAACNNNNNNTAC	2 cut(s)	592, 624
PstNI	CAGNNNCTG	1 cut(s)	839
PsuI	RGATCY	2 cut(s)	208, 577
PsyI	GACNNNGTC	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	2 cut(s)	17, 34
RsaNI	GTAC	2 cut(s)	16, 33
RseI	CAYNNNNRTG	3 cut(s)	545, 627, 752
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	1 cut(s)	771
Sau3AI	GATC	7 cut(s)	208, 473, 506, 537, 577, 603, 820
Sau96I	GGNCC	1 cut(s)	128
ScaI	AGTACT	1 cut(s)	34
SchI	GAGTC	1 cut(s)	848
SfaNI	GCATC	3 cut(s)	757, 845, 964
SinI	GGWCC	1 cut(s)	128
SmiMI	CAYNNNNRTG	3 cut(s)	545, 627, 752
Sse9I	AATT	3 cut(s)	188, 522, 932
SsiI	CCGC	1 cut(s)	575
SspI	AATATT	1 cut(s)	944
SspMI	CTAG	1 cut(s)	740
StyI	CCWWGG	3 cut(s)	47, 570, 685
TaaI	ACNGT	1 cut(s)	699
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	4 cut(s)	158, 177, 460, 536
TasI	AATT	3 cut(s)	188, 522, 932
TatI	WGTACW	1 cut(s)	32
TfiI	GAWTC	4 cut(s)	446, 690, 728, 937
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	1 cut(s)	431
TseI	GCWGC	1 cut(s)	770
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	6 cut(s)	181, 314, 342, 398, 770, 788
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	1 cut(s)	547
Tth111I	GACNNNGTC	1 cut(s)	148
Van91I	CCANNNNNTGG	1 cut(s)	724
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	1 cut(s)	188
XceI	RCATGY	2 cut(s)	86, 317
XmnI	GAANNNNTTC	1 cut(s)	810
XspI	CTAG	1 cut(s)	740
ZrmI	AGTACT	1 cut(s)	34
Zsp2I	ATGCAT	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.