MD02G1128000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0014437
Physical Location & Seq
Reverse (-)
10365465 .. 10367364
1900 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1128000.v1.1.491

Sequence Viewer

Length: 270 bp
ATGAAAGAAGATTACGAGATTGACCAGAAAAAGCAAGCCGCTGCTGATGTTTTGTATAACTATTCAAAATTTGTGATGGCATGCATTGGAAATCAAGTTCGACCTTGTGACCTGAGGTTGCATCTGATGAAGGAAATTTCAGGTATACCAACTTCTCTGAAGAAAGATGCATCCCAGAGAGCAGCTTCCCCAGATGCAATGGGCGAATCATCAAGCTCGGGTACGGCTAGACTTGACAAAACAGACAGTTTTCGGGACCGGTTGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.91

Weight (kDa)

7.75

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35980
fragaria_vesca FvH4_1g11510 FvH4_1g11510
malus_domestica MD02G1128000.v1.1 MD15G1243200.v1.1
prunus_persica Prupe.7G170900_v2.0.a1
pyrus_communis pycom15g21430
rosa_chinensis RchiOBHm_Chr2g0099131
rosa_multiflora Rmu_sc0012711.1_g000002
rosa_roxburghii Rroxscaffold_2G00143410
rosa_rugosa Rorug02G0077000 Rorug02G0077100
rosa_samantha Rh2AG126100 Rh2BG129400 Rh2CG130400 Rh2DG130800
rosa_wichuraiana Rw2G009720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 145
AciI CCGC 1 cut(s) 39
AcsI RAATTY 2 cut(s) 68, 135
AcuI CTGAAG 1 cut(s) 179
AfaI GTAC 1 cut(s) 223
AgeI ACCGGT 1 cut(s) 258
AgsI TTSAA 1 cut(s) 66
AloI GAACNNNNNNTCC 2 cut(s) 81, 113
AluBI AGCT 2 cut(s) 185, 216
AluI AGCT 2 cut(s) 185, 216
Ama87I CYCGRG 1 cut(s) 217
ApeKI GCWGC 2 cut(s) 41, 182
ApoI RAATTY 2 cut(s) 68, 135
AsiGI ACCGGT 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 256
AvaI CYCGRG 1 cut(s) 217
AvaII GGWCC 1 cut(s) 256
AxyI CCTNAGG 1 cut(s) 113
BarI GAAGNNNNNNTAC 2 cut(s) 136, 168
BbvI GCAGC 2 cut(s) 28, 194
BccI CCATC 1 cut(s) 70
BceAI ACGGC 1 cut(s) 240
BfaI CTAG 1 cut(s) 228
BfmI CTRYAG 1 cut(s) 266
BisI GCNGC 3 cut(s) 39, 42, 183
BlsI GCNGC 3 cut(s) 40, 43, 184
Bme18I GGWCC 1 cut(s) 256
BmeT110I CYCGRG 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 1 cut(s) 257
BmsI GCATC 4 cut(s) 130, 157, 179, 184
BsaWI WCCGGW 1 cut(s) 258
Bse118I RCCGGY 1 cut(s) 258
Bse21I CCTNAGG 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 204
BseGI GGATG 1 cut(s) 170
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 104
BseXI GCAGC 2 cut(s) 28, 194
BshTI ACCGGT 1 cut(s) 258
BsiHKCI CYCGRG 1 cut(s) 217
BsiSI CCGG 1 cut(s) 259
BsoBI CYCGRG 1 cut(s) 217
BspACI CCGC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 204
BsrFI RCCGGY 1 cut(s) 258
BssAI RCCGGY 1 cut(s) 258
BssNAI GTATAC 1 cut(s) 146
Bst1107I GTATAC 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 36, 82
BstDEI CTNAG 1 cut(s) 113
BstF5I GGATG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 84
BstSFI CTRYAG 1 cut(s) 266
BstV1I GCAGC 2 cut(s) 28, 194
BstZ17I GTATAC 1 cut(s) 146
Bsu36I CCTNAGG 1 cut(s) 113
BtsCI GGATG 1 cut(s) 170
Cac8I GCNNGC 2 cut(s) 36, 82
Cfr10I RCCGGY 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 256
Csp6I GTAC 1 cut(s) 222
CspAI ACCGGT 1 cut(s) 258
CviAII CATG 1 cut(s) 81
CviJI RGCY 4 cut(s) 38, 185, 216, 227
CviKI_1 RGCY 4 cut(s) 38, 185, 216, 227
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 179
Eco81I CCTNAGG 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 217
EcoT22I ATGCAT 2 cut(s) 86, 172
FaeI CATG 1 cut(s) 84
FaiI YATR 3 cut(s) 57, 82, 146
FatI CATG 1 cut(s) 80
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 3 cut(s) 39, 42, 183
FokI GGATG 1 cut(s) 157
Fsp4HI GCNGC 3 cut(s) 39, 42, 183
FspBI CTAG 1 cut(s) 228
GluI GCNGC 3 cut(s) 39, 42, 183
HapII CCGG 1 cut(s) 259
Hin1II CATG 1 cut(s) 84
HinfI GANTC 1 cut(s) 206
HpaII CCGG 1 cut(s) 259
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 2 cut(s) 126, 159
Hpy188III TCNNGA 1 cut(s) 254
Hpy8I GTNNAC 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4V TGCA 4 cut(s) 84, 121, 170, 197
HpyF3I CTNAG 1 cut(s) 113
Hsp92II CATG 1 cut(s) 84
LpnPI CCDG 5 cut(s) 38, 125, 126, 188, 204
Lsp1109I GCAGC 2 cut(s) 28, 194
LweI GCATC 4 cut(s) 130, 157, 179, 184
MaeI CTAG 1 cut(s) 228
MaeIII GTNAC 1 cut(s) 107
MboII GAAGA 2 cut(s) 20, 172
MluCI AATT 2 cut(s) 68, 135
MnlI CCTC 1 cut(s) 108
Mph1103I ATGCAT 2 cut(s) 86, 172
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 1 cut(s) 259
NlaIII CATG 1 cut(s) 84
NlaIV GGNNCC 1 cut(s) 257
NmuCI GTSAC 1 cut(s) 107
NsiI ATGCAT 2 cut(s) 86, 172
NspI RCATGY 1 cut(s) 84
PaeI GCATGC 1 cut(s) 84
PfeI GAWTC 1 cut(s) 206
PinAI ACCGGT 1 cut(s) 258
PkrI GCNGC 3 cut(s) 40, 43, 184
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 1 cut(s) 256
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
SatI GCNGC 3 cut(s) 39, 42, 183
Sau96I GGNCC 1 cut(s) 256
SetI ASST 6 cut(s) 106, 114, 119, 145, 187, 218
SfaNI GCATC 4 cut(s) 130, 157, 179, 184
SfcI CTRYAG 1 cut(s) 266
SinI GGWCC 1 cut(s) 256
SphI GCATGC 1 cut(s) 84
Sse9I AATT 2 cut(s) 68, 135
SsiI CCGC 1 cut(s) 39
SspMI CTAG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 248
TaqI TCGA 1 cut(s) 100
TasI AATT 2 cut(s) 68, 135
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 1 cut(s) 206
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 2 cut(s) 41, 182
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 17, 143
VpaK11BI GGWCC 1 cut(s) 256
XapI RAATTY 2 cut(s) 68, 135
XceI RCATGY 1 cut(s) 84
XmiI GTMKAC 1 cut(s) 145
XspI CTAG 1 cut(s) 228
Zsp2I ATGCAT 2 cut(s) 86, 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.