Rorug02G0077100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014437
Physical Location & Seq
Forward (+)
6156247 .. 6157008
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0077100.1

Sequence Viewer

Length: 762 bp
ATGGCTTTATCCATGTGGGTCTCTTTAAAACCTTCATTTCTGCAAAACCCAGATCCTCTTTTGCCCCAAATCTCACGCCCAAGTTGTCACTCCCAATCTCCACGAACCCCAGCGATCCGCTGCGGTCTGTGTGAGCTCCGAGAGAGAATTGATTCCATTAAGAGCACCCAGAAAATCACAGAAGCCATGAAGCTTGTAGCGGCTGCCAGGGTACGAAGAGCTCAAGACGCAGTCATCAATGGTCGGCCCTTCTCTGAGACCCTTGTGGAGGTTTTATACGACATCAATGAGCAGCTTCAAGGTGAAGACGTTGATATCCCTTTGACTAATGTTAGACCTGTCAAGAAAGTAGCCCTTGTGGTCATTACCAGTGATAGAGGTCTGTGTGGTGGTTTCAACAATGCATTGACTAAGAAAGCGCAAACCCGAATTGTGGAGTTGAGGAAATTTGGATTGGAGGTGGTTCTGATCAACGTTGGGAAGAAGGGAAACTCGTATTTTATGCGTAGGCTGGAGATTAAGGTGGATAGGTTGATGGAAGGAGGGGCGTTTCCGACTGCGAAAGAAACTTCAATCAACTTAAATCCCCTTCTCAATCTGATAGCTTCTTTTCCTTTGATTATCGTCATTCCCTCCTTCTCTTCTTCCTGCTTCATCTCCACCATTTCTGGGTTCTTACAGAGAAGGGAAGAAAAAAGGGAAGGGAAGGGAAGGGAAGAAGAAGAAGAGGACACGATATGGTGCTTCAGTCCACCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

28.33

Weight (kDa)

9.06

Isoelectric Point (pI)

48.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt PF00231 44 - 191 1.9e-38 ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35980
fragaria_vesca FvH4_1g11510 FvH4_1g11510
malus_domestica MD02G1128000.v1.1 MD15G1243200.v1.1
prunus_persica Prupe.7G170900_v2.0.a1
pyrus_communis pycom15g21430
rosa_chinensis RchiOBHm_Chr2g0099131
rosa_multiflora Rmu_sc0012711.1_g000002
rosa_roxburghii Rroxscaffold_2G00143410
rosa_rugosa Rorug02G0077000 Rorug02G0077100
rosa_samantha Rh2AG126100 Rh2BG129400 Rh2CG130400 Rh2DG130800
rosa_wichuraiana Rw2G009720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 118, 123, 200
AclI AACGTT 1 cut(s) 474
AclWI GGATC 2 cut(s) 47, 109
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 730
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 3 cut(s) 268, 433, 669
AgsI TTSAA 3 cut(s) 299, 397, 573
AjnI CCWGG 1 cut(s) 206
AjuI GAANNNNNNNTTGG 2 cut(s) 437, 469
AleI CACNNNNGTG 1 cut(s) 757
AluBI AGCT 5 cut(s) 136, 193, 221, 295, 605
AluI AGCT 5 cut(s) 136, 193, 221, 295, 605
Alw21I GWGCWC 3 cut(s) 138, 167, 223
Alw26I GTCTC 2 cut(s) 25, 251
AlwI GGATC 2 cut(s) 47, 109
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 3 cut(s) 120, 203, 292
ApoI RAATTY 1 cut(s) 446
Asp700I GAANNNNTTC 1 cut(s) 151
AspLEI GCGC 1 cut(s) 421
AspS9I GGNCC 1 cut(s) 246
AsuHPI GGTGA 1 cut(s) 314
BanII GRGCYC 2 cut(s) 138, 223
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 3 cut(s) 138, 167, 223
BbvI GCAGC 3 cut(s) 107, 190, 304
BccI CCATC 1 cut(s) 529
BciT130I CCWGG 1 cut(s) 208
BclI TGATCA 1 cut(s) 468
BcoDI GTCTC 2 cut(s) 25, 251
BisI GCNGC 4 cut(s) 121, 201, 204, 293
BlsI GCNGC 4 cut(s) 122, 202, 205, 294
Bme1390I CCNGG 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 533
BpuEI CTTGAG 1 cut(s) 207
BsaI GGTCTC 2 cut(s) 25, 251
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 3 cut(s) 268, 433, 669
Bse1I ACTGG 1 cut(s) 369
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 207
BseLI CCNNNNNNNGG 3 cut(s) 268, 433, 669
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 369
BseXI GCAGC 3 cut(s) 107, 190, 304
BseYI CCCAGC 1 cut(s) 109
BshFI GGCC 1 cut(s) 247
BsiHKAI GWGCWC 3 cut(s) 138, 167, 223
BslI CCNNNNNNNGG 3 cut(s) 268, 433, 669
BsmAI GTCTC 2 cut(s) 25, 251
BsnI GGCC 1 cut(s) 247
Bso31I GGTCTC 2 cut(s) 25, 251
Bsp1286I GDGCHC 3 cut(s) 138, 167, 223
Bsp143I GATC 3 cut(s) 52, 114, 468
BspACI CCGC 3 cut(s) 118, 123, 200
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 1 cut(s) 247
BspPI GGATC 2 cut(s) 47, 109
BspQI GCTCTTC 1 cut(s) 211
BspTNI GGTCTC 2 cut(s) 25, 251
BsrI ACTGG 1 cut(s) 369
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 3 cut(s) 52, 114, 468
Bst2UI CCWGG 1 cut(s) 208
Bst6I CTCTTC 3 cut(s) 211, 646, 720
BstDEI CTNAG 2 cut(s) 255, 411
BstENI CCTNNNNNAGG 1 cut(s) 266
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 3 cut(s) 55, 117, 471
BstMAI GTCTC 2 cut(s) 25, 251
BstMBI GATC 3 cut(s) 52, 114, 468
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 206
BstV1I GCAGC 3 cut(s) 107, 190, 304
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 376
CfoI GCGC 1 cut(s) 421
Cfr13I GGNCC 1 cut(s) 246
CseI GACGC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 212
CviAII CATG 2 cut(s) 13, 187
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 2 cut(s) 255, 411
DpnI GATC 3 cut(s) 54, 116, 470
DpnII GATC 3 cut(s) 52, 114, 468
DraI TTTAAA 1 cut(s) 27
Eam1104I CTCTTC 3 cut(s) 211, 646, 720
EarI CTCTTC 3 cut(s) 211, 646, 720
Ecl136II GAGCTC 2 cut(s) 136, 221
Eco24I GRGCYC 2 cut(s) 138, 223
Eco31I GGTCTC 2 cut(s) 25, 251
Eco32I GATATC 1 cut(s) 316
Eco53kI GAGCTC 2 cut(s) 136, 221
Eco57I CTGAAG 1 cut(s) 730
EcoICRI GAGCTC 2 cut(s) 136, 221
EcoNI CCTNNNNNAGG 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 206
EcoRV GATATC 1 cut(s) 316
EcoT22I ATGCAT 1 cut(s) 406
EcoT38I GRGCYC 2 cut(s) 138, 223
FaeI CATG 2 cut(s) 16, 190
FaiI YATR 5 cut(s) 14, 188, 277, 503, 739
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FatI CATG 2 cut(s) 12, 186
FbaI TGATCA 1 cut(s) 468
Fnu4HI GCNGC 4 cut(s) 121, 201, 204, 293
FriOI GRGCYC 2 cut(s) 138, 223
Fsp4HI GCNGC 4 cut(s) 121, 201, 204, 293
GlaI GCGC 1 cut(s) 420
GluI GCNGC 4 cut(s) 121, 201, 204, 293
GsaI CCCAGC 1 cut(s) 113
GsuI CTGGAG 1 cut(s) 533
HaeIII GGCC 1 cut(s) 247
HgaI GACGC 1 cut(s) 236
HhaI GCGC 1 cut(s) 421
Hin1II CATG 2 cut(s) 16, 190
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 1 cut(s) 152
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 1 cut(s) 752
Hpy188I TCNGA 5 cut(s) 140, 256, 468, 555, 600
Hpy188III TCNNGA 2 cut(s) 224, 343
Hpy8I GTNNAC 1 cut(s) 752
HpyCH4IV ACGT 2 cut(s) 309, 474
HpyCH4V TGCA 2 cut(s) 43, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 2 cut(s) 255, 411
HpySE526I ACGT 2 cut(s) 309, 474
Hsp92II CATG 2 cut(s) 16, 190
HspAI GCGC 1 cut(s) 419
Ksp22I TGATCA 1 cut(s) 468
Kzo9I GATC 3 cut(s) 52, 114, 468
LguI GCTCTTC 1 cut(s) 211
LmnI GCTCC 1 cut(s) 141
Lsp1109I GCAGC 3 cut(s) 107, 190, 304
MaeII ACGT 2 cut(s) 309, 474
MaeIII GTNAC 1 cut(s) 86
MalI GATC 3 cut(s) 54, 116, 470
MboI GATC 3 cut(s) 52, 114, 468
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 3 cut(s) 138, 167, 223
MluCI AATT 3 cut(s) 147, 429, 446
MmeI TCCRAC 1 cut(s) 578
MnlI CCTC 8 cut(s) 66, 262, 371, 435, 451, 536, 643, 721
Mph1103I ATGCAT 1 cut(s) 406
MroXI GAANNNNTTC 1 cut(s) 151
MseI TTAA 4 cut(s) 26, 159, 519, 581
MslI CAYNNNNRTG 1 cut(s) 757
MspA1I CMGCKG 1 cut(s) 120
MspR9I CCNGG 1 cut(s) 208
MvaI CCWGG 1 cut(s) 208
MwoI GCNNNNNNNGC 1 cut(s) 227
NdeII GATC 3 cut(s) 52, 114, 468
NlaIII CATG 2 cut(s) 16, 190
NmuCI GTSAC 1 cut(s) 86
NsiI ATGCAT 1 cut(s) 406
OliI CACNNNNGTG 1 cut(s) 757
PciSI GCTCTTC 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 151
PfeI GAWTC 1 cut(s) 152
PflFI GACNNNGTC 1 cut(s) 230
PkrI GCNGC 4 cut(s) 122, 202, 205, 294
Psp124BI GAGCTC 2 cut(s) 138, 223
Psp1406I AACGTT 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 206
PspFI CCCAGC 1 cut(s) 109
PspGI CCWGG 1 cut(s) 206
PspPI GGNCC 1 cut(s) 246
PsuI RGATCY 1 cut(s) 52
PsyI GACNNNGTC 1 cut(s) 230
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
RseI CAYNNNNRTG 1 cut(s) 757
SacI GAGCTC 2 cut(s) 138, 223
SapI GCTCTTC 1 cut(s) 211
SaqAI TTAA 4 cut(s) 26, 159, 519, 581
SatI GCNGC 4 cut(s) 121, 201, 204, 293
Sau3AI GATC 3 cut(s) 52, 114, 468
Sau96I GGNCC 1 cut(s) 246
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 3 cut(s) 138, 167, 223
SmiMI CAYNNNNRTG 1 cut(s) 757
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
Sse9I AATT 3 cut(s) 147, 429, 446
SsiI CCGC 3 cut(s) 118, 123, 200
SstI GAGCTC 2 cut(s) 138, 223
StyD4I CCNGG 1 cut(s) 206
TaiI ACGT 2 cut(s) 312, 477
TasI AATT 3 cut(s) 147, 429, 446
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 4 cut(s) 26, 159, 519, 581
Tru9I TTAA 4 cut(s) 26, 159, 519, 581
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 3 cut(s) 120, 203, 292
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 3 cut(s) 24, 203, 643
TspRI CASTG 1 cut(s) 376
Tth111I GACNNNGTC 1 cut(s) 230
XagI CCTNNNNNAGG 1 cut(s) 266
XapI RAATTY 1 cut(s) 446
XmnI GAANNNNTTC 1 cut(s) 151
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.