MD15G1243200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014437
Physical Location & Seq
Reverse (-)
19984996 .. 19986208
1213 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1243200.v1.1.491

Sequence Viewer

Length: 195 bp
ATGGCATGCATTGGAAATCAAGTTCGACCTTGTGACTTGCGGTTGCATCTGATGAAGGAAGTTTCAGGTATACCAACTTCTCTGAAGAAAGATGCATCCCAGAGAGCAGCATCTCCTGATGCAATGGCCGAATCATCAAGCTCGGGTACAGCTAGACTTGATAAAGCAGACAGCTTTCGGGACCGGATGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

6.92

Weight (kDa)

8.8

Isoelectric Point (pI)

40.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35980
fragaria_vesca FvH4_1g11510 FvH4_1g11510
malus_domestica MD02G1128000.v1.1 MD15G1243200.v1.1
prunus_persica Prupe.7G170900_v2.0.a1
pyrus_communis pycom15g21430
rosa_chinensis RchiOBHm_Chr2g0099131
rosa_multiflora Rmu_sc0012711.1_g000002
rosa_roxburghii Rroxscaffold_2G00143410
rosa_rugosa Rorug02G0077000 Rorug02G0077100
rosa_samantha Rh2AG126100 Rh2BG129400 Rh2CG130400 Rh2DG130800
rosa_wichuraiana Rw2G009720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 70
AciI CCGC 1 cut(s) 40
AcoI YGGCCR 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 104
AfaI GTAC 1 cut(s) 148
AloI GAACNNNNNNTCC 1 cut(s) 38
AluBI AGCT 3 cut(s) 141, 152, 174
AluI AGCT 3 cut(s) 141, 152, 174
Ama87I CYCGRG 1 cut(s) 142
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 181
AvaI CYCGRG 1 cut(s) 142
AvaII GGWCC 1 cut(s) 181
BarI GAAGNNNNNNTAC 2 cut(s) 61, 93
BbvI GCAGC 1 cut(s) 119
BfaI CTAG 1 cut(s) 153
BfmI CTRYAG 1 cut(s) 191
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme18I GGWCC 1 cut(s) 181
BmeT110I CYCGRG 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 1 cut(s) 182
BmsI GCATC 6 cut(s) 55, 82, 104, 109, 119, 177
BsaWI WCCGGW 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 129
BseGI GGATG 2 cut(s) 95, 192
BseMI GCAATG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 119
BshFI GGCC 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 142
BsiSI CCGG 1 cut(s) 184
BsnI GGCC 1 cut(s) 128
BsoBI CYCGRG 1 cut(s) 142
BspACI CCGC 1 cut(s) 40
BspANI GGCC 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 129
BssNAI GTATAC 1 cut(s) 71
Bst1107I GTATAC 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 7
BstF5I GGATG 2 cut(s) 95, 192
BstNSI RCATGY 1 cut(s) 9
BstSFI CTRYAG 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 119
BstZ17I GTATAC 1 cut(s) 71
BsuRI GGCC 1 cut(s) 128
BtsCI GGATG 2 cut(s) 95, 192
Cac8I GCNNGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 181
Csp6I GTAC 1 cut(s) 147
CviAII CATG 1 cut(s) 6
CviJI RGCY 4 cut(s) 128, 141, 152, 174
CviKI_1 RGCY 4 cut(s) 128, 141, 152, 174
CviQI GTAC 1 cut(s) 147
EaeI YGGCCR 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 142
EcoT22I ATGCAT 2 cut(s) 11, 97
FaeI CATG 1 cut(s) 9
FaiI YATR 3 cut(s) 7, 71, 193
FatI CATG 1 cut(s) 5
FblI GTMKAC 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 153
GluI GCNGC 1 cut(s) 108
HaeIII GGCC 1 cut(s) 128
HapII CCGG 1 cut(s) 184
Hin1II CATG 1 cut(s) 9
HinfI GANTC 1 cut(s) 131
HpaII CCGG 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 2 cut(s) 51, 84
Hpy188III TCNNGA 2 cut(s) 116, 179
Hpy8I GTNNAC 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 49
HpyCH4V TGCA 4 cut(s) 9, 46, 95, 122
Hsp92II CATG 1 cut(s) 9
LpnPI CCDG 3 cut(s) 51, 113, 129
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 6 cut(s) 55, 82, 104, 109, 119, 177
MaeI CTAG 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 32
MboII GAAGA 1 cut(s) 97
Mph1103I ATGCAT 2 cut(s) 11, 97
MspI CCGG 1 cut(s) 184
NlaIII CATG 1 cut(s) 9
NlaIV GGNNCC 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 32
NsiI ATGCAT 2 cut(s) 11, 97
NspI RCATGY 1 cut(s) 9
PaeI GCATGC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 182
PspPI GGNCC 1 cut(s) 181
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
SatI GCNGC 1 cut(s) 108
Sau96I GGNCC 1 cut(s) 181
SetI ASST 5 cut(s) 31, 70, 143, 154, 176
SfaNI GCATC 6 cut(s) 55, 82, 104, 109, 119, 177
SfcI CTRYAG 1 cut(s) 191
SinI GGWCC 1 cut(s) 181
SphI GCATGC 1 cut(s) 9
SsiI CCGC 1 cut(s) 40
SspMI CTAG 1 cut(s) 153
TaqI TCGA 1 cut(s) 25
TfiI GAWTC 1 cut(s) 131
TseFI GTSAC 1 cut(s) 32
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 181
XceI RCATGY 1 cut(s) 9
XmiI GTMKAC 1 cut(s) 70
XspI CTAG 1 cut(s) 153
Zsp2I ATGCAT 2 cut(s) 11, 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.