isoform X1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD02G1256900.v1.1 MD07G1063600.v1.1 |
| prunus_persica | Prupe.2G075900_v2.0.a1 Prupe.2G075900_v2.0.a1 Prupe.2G075900_v2.0.a1 Prupe.2G075900_v2.0.a1 |
| pyrus_communis | pycom02g21720 pycom02g21760 pycom07g04900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 515, 3738 |
| AarI | CACCTGC | 1 cut(s) | 1967 |
| Acc36I | ACCTGC | 5 cut(s) | 781, 828, 1967, 2977, 3364 |
| AccB1I | GGYRCC | 4 cut(s) | 1171, 1520, 2696, 2976 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1181, 2087 |
| AccBSI | CCGCTC | 1 cut(s) | 3626 |
| AccII | CGCG | 1 cut(s) | 1116 |
| AciI | CCGC | 4 cut(s) | 5, 3305, 3624, 3908 |
| AclI | AACGTT | 1 cut(s) | 1110 |
| AclWI | GGATC | 8 cut(s) | 227, 572, 1136, 1330, 1783, 2491, 2498, 2504 |
| AcoI | YGGCCR | 1 cut(s) | 3033 |
| AcsI | RAATTY | 8 cut(s) | 199, 1474, 2020, 2274, 2387, 2736, 2933, 3541 |
| AcuI | CTGAAG | 6 cut(s) | 558, 569, 1484, 1925, 3624, 3654 |
| AcyI | GRCGYC | 3 cut(s) | 1172, 1894, 2977 |
| AfaI | GTAC | 8 cut(s) | 169, 187, 1086, 2722, 3171, 3401, 3475, 3865 |
| AflII | CTTAAG | 1 cut(s) | 3238 |
| AflIII | ACRYGT | 2 cut(s) | 2456, 2713 |
| AjnI | CCWGG | 7 cut(s) | 94, 419, 1210, 1633, 1861, 2446, 3536 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1725, 1757, 2070, 2102, 2725, 2757 |
| AleI | CACNNNNGTG | 1 cut(s) | 359 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1731, 1763, 2210, 2242 |
| Alw26I | GTCTC | 6 cut(s) | 1042, 1380, 1747, 2169, 3134, 3758 |
| AlwI | GGATC | 8 cut(s) | 227, 572, 1136, 1330, 1783, 2491, 2498, 2504 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2831 |
| Ama87I | CYCGRG | 1 cut(s) | 3039 |
| ApoI | RAATTY | 8 cut(s) | 199, 1474, 2020, 2274, 2387, 2736, 2933, 3541 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 38, 70, 1385, 1417 |
| AseI | ATTAAT | 2 cut(s) | 963, 3657 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 571, 759, 1162, 2004, 2740 |
| AspLEI | GCGC | 2 cut(s) | 1174, 2979 |
| AsuC2I | CCSGG | 2 cut(s) | 1941, 2981 |
| AvaI | CYCGRG | 1 cut(s) | 3039 |
| AvaII | GGWCC | 8 cut(s) | 373, 840, 1485, 1631, 2090, 2246, 3389, 3755 |
| AxyI | CCTNAGG | 3 cut(s) | 268, 1239, 3750 |
| BalI | TGGCCA | 1 cut(s) | 3035 |
| BamHI | GGATCC | 1 cut(s) | 2496 |
| BanI | GGYRCC | 4 cut(s) | 1171, 1520, 2696, 2976 |
| BbsI | GAAGAC | 2 cut(s) | 324, 3626 |
| BbvCI | CCTCAGC | 1 cut(s) | 80 |
| BccI | CCATC | 7 cut(s) | 75, 842, 1239, 2696, 2837, 2903, 3369 |
| BceAI | ACGGC | 2 cut(s) | 2990, 3250 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2678, 2712, 2947, 2981 |
| BciT130I | CCWGG | 7 cut(s) | 96, 421, 1212, 1635, 1863, 2448, 3538 |
| BciVI | GTATCC | 1 cut(s) | 2122 |
| BclI | TGATCA | 1 cut(s) | 3310 |
| BcnI | CCSGG | 2 cut(s) | 1941, 2981 |
| BcoDI | GTCTC | 6 cut(s) | 1042, 1380, 1747, 2169, 3134, 3758 |
| BfaI | CTAG | 7 cut(s) | 165, 401, 1397, 2055, 2837, 3120, 3824 |
| BfmI | CTRYAG | 5 cut(s) | 366, 819, 1317, 2882, 3759 |
| BfoI | RGCGCY | 2 cut(s) | 1175, 2980 |
| BfrI | CTTAAG | 1 cut(s) | 3238 |
| BfuAI | ACCTGC | 5 cut(s) | 781, 828, 1967, 2977, 3364 |
| BfuI | GTATCC | 1 cut(s) | 2122 |
| BglII | AGATCT | 1 cut(s) | 3856 |
| BlpI | GCTNAGC | 1 cut(s) | 3627 |
| BmcAI | AGTACT | 2 cut(s) | 169, 3865 |
| Bme1390I | CCNGG | 9 cut(s) | 96, 421, 1212, 1635, 1863, 1941, 2448, 2981, 3538 |
| Bme18I | GGWCC | 8 cut(s) | 373, 840, 1485, 1631, 2090, 2246, 3389, 3755 |
| BmeT110I | CYCGRG | 1 cut(s) | 3039 |
| BmrFI | CCNGG | 9 cut(s) | 96, 421, 1212, 1635, 1863, 1941, 2448, 2981, 3538 |
| BmrI | ACTGGG | 2 cut(s) | 3198, 3288 |
| BmuI | ACTGGG | 2 cut(s) | 3198, 3288 |
| BpiI | GAAGAC | 2 cut(s) | 324, 3626 |
| BpmI | CTGGAG | 6 cut(s) | 342, 617, 798, 1758, 2428, 2795 |
| Bpu10I | CCTNAGC | 3 cut(s) | 80, 278, 3072 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3627 |
| BpuEI | CTTGAG | 2 cut(s) | 1001, 2522 |
| BpuMI | CCSGG | 2 cut(s) | 1941, 2981 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2495, 3312 |
| BsaHI | GRCGYC | 3 cut(s) | 1172, 1894, 2977 |
| BsaI | GGTCTC | 3 cut(s) | 1042, 3134, 3758 |
| BsaJI | CCNNGG | 7 cut(s) | 94, 173, 420, 843, 1338, 1833, 2480 |
| BsaWI | WCCGGW | 2 cut(s) | 3143, 3287 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 771, 801, 1192, 1222, 1731, 1761, 2713, 2743 |
| Bse21I | CCTNAGG | 3 cut(s) | 268, 1239, 3750 |
| Bse3DI | GCAATG | 4 cut(s) | 187, 2185, 2549, 3093 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2495, 3312 |
| BseBI | CCWGG | 7 cut(s) | 96, 421, 1212, 1635, 1863, 2448, 3538 |
| BseDI | CCNNGG | 7 cut(s) | 94, 173, 420, 843, 1338, 1833, 2480 |
| BseGI | GGATG | 8 cut(s) | 67, 448, 853, 1250, 2676, 2857, 3313, 3361 |
| BseJI | GATNNNNATC | 2 cut(s) | 2495, 3312 |
| BseMI | GCAATG | 4 cut(s) | 187, 2185, 2549, 3093 |
| BseRI | GAGGAG | 3 cut(s) | 908, 1890, 2159 |
| BseYI | CCCAGC | 1 cut(s) | 59 |
| BsgI | GTGCAG | 3 cut(s) | 1445, 1995, 3714 |
| Bsh1236I | CGCG | 1 cut(s) | 1116 |
| BshNI | GGYRCC | 4 cut(s) | 1171, 1520, 2696, 2976 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3039 |
| BsiSI | CCGG | 4 cut(s) | 1940, 2980, 3144, 3288 |
| BslFI | GGGAC | 3 cut(s) | 1498, 2450, 3533 |
| BsmAI | GTCTC | 6 cut(s) | 1042, 1380, 1747, 2169, 3134, 3758 |
| BsmFI | GGGAC | 3 cut(s) | 1498, 2450, 3533 |
| BsmI | GAATGC | 3 cut(s) | 300, 2162, 2596 |
| Bso31I | GGTCTC | 3 cut(s) | 1042, 3134, 3758 |
| BsoBI | CYCGRG | 1 cut(s) | 3039 |
| Bsp1407I | TGTACA | 1 cut(s) | 3399 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3627 |
| Bsp19I | CCATGG | 2 cut(s) | 843, 1338 |
| Bsp68I | TCGCGA | 1 cut(s) | 1116 |
| BspACI | CCGC | 4 cut(s) | 5, 3305, 3624, 3908 |
| BspFNI | CGCG | 1 cut(s) | 1116 |
| BspHI | TCATGA | 1 cut(s) | 2586 |
| BspMI | ACCTGC | 5 cut(s) | 781, 828, 1967, 2977, 3364 |
| BspPI | GGATC | 8 cut(s) | 227, 572, 1136, 1330, 1783, 2491, 2498, 2504 |
| BspT107I | GGYRCC | 4 cut(s) | 1171, 1520, 2696, 2976 |
| BspTI | CTTAAG | 1 cut(s) | 3238 |
| BspTNI | GGTCTC | 3 cut(s) | 1042, 3134, 3758 |
| BsrBI | CCGCTC | 1 cut(s) | 3626 |
| BsrDI | GCAATG | 4 cut(s) | 187, 2185, 2549, 3093 |
| BsrGI | TGTACA | 1 cut(s) | 3399 |
| BssECI | CCNNGG | 7 cut(s) | 94, 173, 420, 843, 1338, 1833, 2480 |
| BssNI | GRCGYC | 3 cut(s) | 1172, 1894, 2977 |
| BssT1I | CCWWGG | 4 cut(s) | 173, 843, 1338, 2480 |
| Bst2UI | CCWGG | 7 cut(s) | 96, 421, 1212, 1635, 1863, 2448, 3538 |
| Bst6I | CTCTTC | 5 cut(s) | 577, 1336, 1499, 2208, 3101 |
| BstACI | GRCGYC | 3 cut(s) | 1172, 1894, 2977 |
| BstAFI | CTTAAG | 1 cut(s) | 3238 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2024 |
| BstAUI | TGTACA | 1 cut(s) | 3399 |
| BstC8I | GCNNGC | 3 cut(s) | 1198, 3559, 3729 |
| BstDSI | CCRYGG | 2 cut(s) | 843, 1338 |
| BstEII | GGTNACC | 1 cut(s) | 3587 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 777 |
| BstF5I | GGATG | 8 cut(s) | 67, 448, 853, 1250, 2676, 2857, 3313, 3361 |
| BstFNI | CGCG | 1 cut(s) | 1116 |
| BstH2I | RGCGCY | 2 cut(s) | 1175, 2980 |
| BstHHI | GCGC | 2 cut(s) | 1174, 2979 |
| BstMAI | GTCTC | 6 cut(s) | 1042, 1380, 1747, 2169, 3134, 3758 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 11, 688, 874, 917, 1169, 1520, 2024, 2033, 2983 |
| BstNI | CCWGG | 7 cut(s) | 96, 421, 1212, 1635, 1863, 2448, 3538 |
| BstNSI | RCATGY | 3 cut(s) | 1200, 2460, 2717 |
| BstPI | GGTNACC | 1 cut(s) | 3587 |
| BstSCI | CCNGG | 9 cut(s) | 94, 419, 1210, 1633, 1861, 1939, 2446, 2979, 3536 |
| BstSFI | CTRYAG | 5 cut(s) | 366, 819, 1317, 2882, 3759 |
| BstUI | CGCG | 1 cut(s) | 1116 |
| BstV2I | GAAGAC | 2 cut(s) | 324, 3626 |
| BstX2I | RGATCY | 4 cut(s) | 232, 577, 2496, 3856 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2044 |
| BstYI | RGATCY | 4 cut(s) | 232, 577, 2496, 3856 |
| Bsu36I | CCTNAGG | 3 cut(s) | 268, 1239, 3750 |
| BsuI | GTATCC | 1 cut(s) | 2122 |
| BtgI | CCRYGG | 2 cut(s) | 843, 1338 |
| BtgZI | GCGATG | 2 cut(s) | 1131, 3180 |
| BtsCI | GGATG | 8 cut(s) | 67, 448, 853, 1250, 2676, 2857, 3313, 3361 |
| BtsI | GCAGTG | 2 cut(s) | 316, 1648 |
| BtsIMutI | CAGTG | 7 cut(s) | 224, 316, 366, 1152, 1648, 2404, 2832 |
| BtuMI | TCGCGA | 1 cut(s) | 1116 |
| BveI | ACCTGC | 5 cut(s) | 781, 828, 1967, 2977, 3364 |
| Cac8I | GCNNGC | 3 cut(s) | 1198, 3559, 3729 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2831 |
| CciI | TCATGA | 1 cut(s) | 2586 |
| CfoI | GCGC | 2 cut(s) | 1174, 2979 |
| CseI | GACGC | 1 cut(s) | 1883 |
| CsiI | ACCWGGT | 1 cut(s) | 1633 |
| Csp6I | GTAC | 8 cut(s) | 168, 186, 1085, 2721, 3170, 3400, 3474, 3864 |
| CviQI | GTAC | 8 cut(s) | 168, 186, 1085, 2721, 3170, 3400, 3474, 3864 |
| DinI | GGCGCC | 2 cut(s) | 1173, 2978 |
| DraI | TTTAAA | 1 cut(s) | 483 |
| EaeI | YGGCCR | 1 cut(s) | 3033 |
| Eam1104I | CTCTTC | 5 cut(s) | 577, 1336, 1499, 2208, 3101 |
| EarI | CTCTTC | 5 cut(s) | 577, 1336, 1499, 2208, 3101 |
| EciI | GGCGGA | 1 cut(s) | 3320 |
| Eco130I | CCWWGG | 4 cut(s) | 173, 843, 1338, 2480 |
| Eco147I | AGGCCT | 1 cut(s) | 1861 |
| Eco31I | GGTCTC | 3 cut(s) | 1042, 3134, 3758 |
| Eco47I | GGWCC | 8 cut(s) | 373, 840, 1485, 1631, 2090, 2246, 3389, 3755 |
| Eco57I | CTGAAG | 6 cut(s) | 558, 569, 1484, 1925, 3624, 3654 |
| Eco81I | CCTNAGG | 3 cut(s) | 268, 1239, 3750 |
| Eco88I | CYCGRG | 1 cut(s) | 3039 |
| Eco91I | GGTNACC | 1 cut(s) | 3587 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 777 |
| EcoO109I | RGGNCCY | 2 cut(s) | 373, 3755 |
| EcoO65I | GGTNACC | 1 cut(s) | 3587 |
| EcoRI | GAATTC | 1 cut(s) | 3541 |
| EcoRII | CCWGG | 7 cut(s) | 94, 419, 1210, 1633, 1861, 2446, 3536 |
| EcoT14I | CCWWGG | 4 cut(s) | 173, 843, 1338, 2480 |
| EgeI | GGCGCC | 2 cut(s) | 1173, 2978 |
| EheI | GGCGCC | 2 cut(s) | 1173, 2978 |
| ErhI | CCWWGG | 4 cut(s) | 173, 843, 1338, 2480 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 857, 889, 2725, 2757, 3037, 3069, 3411, 3443 |
| FaqI | GGGAC | 3 cut(s) | 1498, 2450, 3533 |
| FbaI | TGATCA | 1 cut(s) | 3310 |
| FokI | GGATG | 8 cut(s) | 54, 455, 860, 1257, 2683, 2864, 3320, 3348 |
| FspBI | CTAG | 7 cut(s) | 165, 401, 1397, 2055, 2837, 3120, 3824 |
| GlaI | GCGC | 2 cut(s) | 1173, 2978 |
| GsaI | CCCAGC | 1 cut(s) | 63 |
| GsuI | CTGGAG | 6 cut(s) | 342, 617, 798, 1758, 2428, 2795 |
| HaeII | RGCGCY | 2 cut(s) | 1175, 2980 |
| HapII | CCGG | 4 cut(s) | 1940, 2980, 3144, 3288 |
| HgaI | GACGC | 1 cut(s) | 1883 |
| HhaI | GCGC | 2 cut(s) | 1174, 2979 |
| Hin1I | GRCGYC | 3 cut(s) | 1172, 1894, 2977 |
| Hin6I | GCGC | 2 cut(s) | 1172, 2977 |
| HinP1I | GCGC | 2 cut(s) | 1172, 2977 |
| HincII | GTYRAC | 1 cut(s) | 1068 |
| HindII | GTYRAC | 1 cut(s) | 1068 |
| HindIII | AAGCTT | 4 cut(s) | 121, 477, 3002, 3026 |
| HpaII | CCGG | 4 cut(s) | 1940, 2980, 3144, 3288 |
| Hpy166II | GTNNAC | 6 cut(s) | 224, 261, 1068, 2300, 3245, 3713 |
| Hpy8I | GTNNAC | 6 cut(s) | 224, 261, 1068, 2300, 3245, 3713 |
| HpyCH4IV | ACGT | 5 cut(s) | 1058, 1110, 1306, 2262, 3733 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 11, 688, 874, 917, 1169, 1520, 2024, 2033, 2983 |
| HpySE526I | ACGT | 5 cut(s) | 1058, 1110, 1306, 2262, 3733 |
| Hsp92I | GRCGYC | 3 cut(s) | 1172, 1894, 2977 |
| HspAI | GCGC | 2 cut(s) | 1172, 2977 |
| KasI | GGCGCC | 2 cut(s) | 1171, 2976 |
| Ksp22I | TGATCA | 1 cut(s) | 3310 |
| LmnI | GCTCC | 6 cut(s) | 557, 895, 1075, 2125, 2794, 2983 |
| MabI | ACCWGGT | 1 cut(s) | 1633 |
| MaeI | CTAG | 7 cut(s) | 165, 401, 1397, 2055, 2837, 3120, 3824 |
| MaeII | ACGT | 5 cut(s) | 1058, 1110, 1306, 2262, 3733 |
| MbiI | CCGCTC | 1 cut(s) | 3626 |
| MfeI | CAATTG | 3 cut(s) | 2859, 2946, 3298 |
| MflI | RGATCY | 4 cut(s) | 232, 577, 2496, 3856 |
| MlsI | TGGCCA | 1 cut(s) | 3035 |
| MluNI | TGGCCA | 1 cut(s) | 3035 |
| Mly113I | GGCGCC | 2 cut(s) | 1172, 2977 |
| MlyI | GAGTC | 7 cut(s) | 151, 2227, 2303, 2527, 2778, 3106, 3806 |
| MmeI | TCCRAC | 3 cut(s) | 420, 1008, 2772 |
| Mox20I | TGGCCA | 1 cut(s) | 3035 |
| MroXI | GAANNNNTTC | 5 cut(s) | 571, 759, 1162, 2004, 2740 |
| MscI | TGGCCA | 1 cut(s) | 3035 |
| MslI | CAYNNNNRTG | 4 cut(s) | 359, 2138, 3801, 3926 |
| Msp20I | TGGCCA | 1 cut(s) | 3035 |
| MspA1I | CMGCKG | 1 cut(s) | 3674 |
| MspCI | CTTAAG | 1 cut(s) | 3238 |
| MspI | CCGG | 4 cut(s) | 1940, 2980, 3144, 3288 |
| MspR9I | CCNGG | 9 cut(s) | 96, 421, 1212, 1635, 1863, 1941, 2448, 2981, 3538 |
| MunI | CAATTG | 3 cut(s) | 2859, 2946, 3298 |
| Mva1269I | GAATGC | 3 cut(s) | 300, 2162, 2596 |
| MvaI | CCWGG | 7 cut(s) | 96, 421, 1212, 1635, 1863, 2448, 3538 |
| MvnI | CGCG | 1 cut(s) | 1116 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 11, 688, 874, 917, 1169, 1520, 2024, 2033, 2983 |
| NarI | GGCGCC | 2 cut(s) | 1172, 2977 |
| NciI | CCSGG | 2 cut(s) | 1941, 2981 |
| NcoI | CCATGG | 2 cut(s) | 843, 1338 |
| NmeAIII | GCCGAG | 1 cut(s) | 1814 |
| NmuCI | GTSAC | 3 cut(s) | 646, 1147, 3587 |
| NruI | TCGCGA | 1 cut(s) | 1116 |
| NspI | RCATGY | 3 cut(s) | 1200, 2460, 2717 |
| OliI | CACNNNNGTG | 1 cut(s) | 359 |
| PaeI | GCATGC | 1 cut(s) | 1200 |
| PaeR7I | CTCGAG | 1 cut(s) | 3039 |
| PagI | TCATGA | 1 cut(s) | 2586 |
| PaqCI | CACCTGC | 1 cut(s) | 1967 |
| PceI | AGGCCT | 1 cut(s) | 1861 |
| PciI | ACATGT | 2 cut(s) | 2456, 2713 |
| PctI | GAATGC | 3 cut(s) | 300, 2162, 2596 |
| PdmI | GAANNNNTTC | 5 cut(s) | 571, 759, 1162, 2004, 2740 |
| PfeI | GAWTC | 7 cut(s) | 446, 586, 760, 974, 1586, 1825, 2601 |
| PflFI | GACNNNGTC | 1 cut(s) | 1034 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1181, 2087 |
| PleI | GAGTC | 7 cut(s) | 150, 2227, 2303, 2527, 2778, 3106, 3806 |
| PluTI | GGCGCC | 2 cut(s) | 1175, 2980 |
| PpsI | GAGTC | 7 cut(s) | 150, 2227, 2303, 2527, 2778, 3106, 3806 |
| PpuMI | RGGWCCY | 2 cut(s) | 373, 3755 |
| PscI | ACATGT | 2 cut(s) | 2456, 2713 |
| PshBI | ATTAAT | 2 cut(s) | 963, 3657 |
| PsiI | TTATAA | 2 cut(s) | 515, 3738 |
| Psp1406I | AACGTT | 1 cut(s) | 1110 |
| Psp5II | RGGWCCY | 2 cut(s) | 373, 3755 |
| Psp6I | CCWGG | 7 cut(s) | 94, 419, 1210, 1633, 1861, 2446, 3536 |
| PspEI | GGTNACC | 1 cut(s) | 3587 |
| PspFI | CCCAGC | 1 cut(s) | 59 |
| PspGI | CCWGG | 7 cut(s) | 94, 419, 1210, 1633, 1861, 2446, 3536 |
| PspPPI | RGGWCCY | 2 cut(s) | 373, 3755 |
| PspXI | VCTCGAGB | 1 cut(s) | 3039 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2831 |
| PsuI | RGATCY | 4 cut(s) | 232, 577, 2496, 3856 |
| PsyI | GACNNNGTC | 1 cut(s) | 1034 |
| PvuII | CAGCTG | 1 cut(s) | 3674 |
| RruI | TCGCGA | 1 cut(s) | 1116 |
| RsaI | GTAC | 8 cut(s) | 169, 187, 1086, 2722, 3171, 3401, 3475, 3865 |
| RsaNI | GTAC | 8 cut(s) | 168, 186, 1085, 2721, 3170, 3400, 3474, 3864 |
| RseI | CAYNNNNRTG | 4 cut(s) | 359, 2138, 3801, 3926 |
| ScaI | AGTACT | 2 cut(s) | 169, 3865 |
| SchI | GAGTC | 7 cut(s) | 151, 2227, 2303, 2527, 2778, 3106, 3806 |
| ScrFI | CCNGG | 9 cut(s) | 96, 421, 1212, 1635, 1863, 1941, 2448, 2981, 3538 |
| SexAI | ACCWGGT | 1 cut(s) | 1633 |
| SfcI | CTRYAG | 5 cut(s) | 366, 819, 1317, 2882, 3759 |
| SfoI | GGCGCC | 2 cut(s) | 1173, 2978 |
| Sfr274I | CTCGAG | 1 cut(s) | 3039 |
| SinI | GGWCC | 8 cut(s) | 373, 840, 1485, 1631, 2090, 2246, 3389, 3755 |
| SlaI | CTCGAG | 1 cut(s) | 3039 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 359, 2138, 3801, 3926 |
| SmlI | CTYRAG | 4 cut(s) | 1016, 2537, 3039, 3238 |
| SmoI | CTYRAG | 4 cut(s) | 1016, 2537, 3039, 3238 |
| SphI | GCATGC | 1 cut(s) | 1200 |
| SseBI | AGGCCT | 1 cut(s) | 1861 |
| SsiI | CCGC | 4 cut(s) | 5, 3305, 3624, 3908 |
| SspDI | GGCGCC | 2 cut(s) | 1171, 2976 |
| SspI | AATATT | 1 cut(s) | 3396 |
| SspMI | CTAG | 7 cut(s) | 165, 401, 1397, 2055, 2837, 3120, 3824 |
| StuI | AGGCCT | 1 cut(s) | 1861 |
| StyD4I | CCNGG | 9 cut(s) | 94, 419, 1210, 1633, 1861, 1939, 2446, 2979, 3536 |
| StyI | CCWWGG | 4 cut(s) | 173, 843, 1338, 2480 |
| TaiI | ACGT | 5 cut(s) | 1061, 1113, 1309, 2265, 3736 |
| TaqI | TCGA | 6 cut(s) | 108, 563, 1378, 2967, 3040, 3175 |
| TaqII | GACCGA | 1 cut(s) | 634 |
| TatI | WGTACW | 4 cut(s) | 167, 3169, 3399, 3863 |
| TfiI | GAWTC | 7 cut(s) | 446, 586, 760, 974, 1586, 1825, 2601 |
| TscAI | CASTG | 7 cut(s) | 224, 316, 366, 1152, 1648, 2411, 2832 |
| TseFI | GTSAC | 3 cut(s) | 646, 1147, 3587 |
| Tsp45I | GTSAC | 3 cut(s) | 646, 1147, 3587 |
| TspGWI | ACGGA | 1 cut(s) | 116 |
| TspRI | CASTG | 7 cut(s) | 224, 316, 366, 1152, 1648, 2411, 2832 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1034 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1181, 2087 |
| Vha464I | CTTAAG | 1 cut(s) | 3238 |
| VpaK11BI | GGWCC | 8 cut(s) | 373, 840, 1485, 1631, 2090, 2246, 3389, 3755 |
| VspI | ATTAAT | 2 cut(s) | 963, 3657 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 777 |
| XapI | RAATTY | 8 cut(s) | 199, 1474, 2020, 2274, 2387, 2736, 2933, 3541 |
| XceI | RCATGY | 3 cut(s) | 1200, 2460, 2717 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2906, 3775 |
| XhoI | CTCGAG | 1 cut(s) | 3039 |
| XmnI | GAANNNNTTC | 5 cut(s) | 571, 759, 1162, 2004, 2740 |
| XspI | CTAG | 7 cut(s) | 165, 401, 1397, 2055, 2837, 3120, 3824 |
| ZrmI | AGTACT | 2 cut(s) | 169, 3865 |