pycom02g21760

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0018899
Physical Location & Seq
Forward (+)
19981679 .. 19983233
1555 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g21760.1

Sequence Viewer

Length: 660 bp
ATGTGCCTCTCAGCCTCTATCCTCTATTTCAACTTCTGTAATCATCAAGTCTATCTTAAAACAACTTGGAGGGCAGTGGGTTATGGTATTTCTGGAAGTCTTACCCATCCCTCTGAGCAGGTTACTAAAACTGGATCAATATTGTACAGAGGAAAAAAGAAGGACGTTCTGCTTGATGATGTTGGCACAAAGGGAAAAAGAAGTGAGAGAGAAAGGGACAAGGATACGTCAGCCAGGAATTCTGTCACCAAAGCTGGCCGTCAATCATTGGGTAACAATAAGGGTGACCGTAAAACCAAAACAAAGCCCAAACAGAAGACCGCTCAGCTATCAACTTCAGGAAATGGGCTGATTAATAATGCCCCTTCAGCTGGATTTGTTGAACTTGTTGGCAACAATAATAACAGTAAACGAGAGGTTGAGCCTGCACGTTATAATGACATTCCTCAGGGTCCTACAGAGACCAAGAAACAAATGGATTTTGCAAACTTGCATCTGAATGAATTAGACTCGATAGAACTAGGAGTAGCCAATGAACTTGGTGGCAACCAAGATCTGAGTACTTGGTTTAACTTTGATGATGACGGTTTGCAAGACCATGATGCGGAAGGGCTTGACATTCCTATGGACGACCTCTCAGATTTGAATATGCTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ada3

Protein Analysis

220

Amino Acids

24.15

Weight (kDa)

6.11

Isoelectric Point (pI)

23.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 435
Acc36I ACCTGC 1 cut(s) 109
AccBSI CCGCTC 1 cut(s) 323
AciI CCGC 2 cut(s) 321, 605
AclWI GGATC 1 cut(s) 142
AcoI YGGCCR 1 cut(s) 256
AcsI RAATTY 1 cut(s) 238
AcuI CTGAAG 2 cut(s) 321, 351
AfaI GTAC 2 cut(s) 146, 562
AfiI CCNNNNNNNGG 2 cut(s) 371, 604
AgsI TTSAA 3 cut(s) 31, 383, 646
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 3 cut(s) 254, 328, 371
AluI AGCT 3 cut(s) 254, 328, 371
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 1 cut(s) 142
AoxI GGCC 1 cut(s) 256
ApoI RAATTY 1 cut(s) 238
AseI ATTAAT 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 452
AsuHPI GGTGA 2 cut(s) 238, 296
AvaII GGWCC 1 cut(s) 452
AxyI CCTNAGG 1 cut(s) 447
BbsI GAAGAC 1 cut(s) 323
BccI CCATC 1 cut(s) 114
BceAI ACGGC 1 cut(s) 243
BciT130I CCWGG 1 cut(s) 235
BciVI GTATCC 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 1 cut(s) 521
BfmI CTRYAG 1 cut(s) 456
BfuAI ACCTGC 1 cut(s) 109
BfuI GTATCC 1 cut(s) 217
BglII AGATCT 1 cut(s) 553
BlpI GCTNAGC 1 cut(s) 324
BmcAI AGTACT 1 cut(s) 562
Bme1390I CCNGG 1 cut(s) 235
Bme18I GGWCC 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 452
BmiI GGNNCC 1 cut(s) 453
BmrFI CCNGG 1 cut(s) 235
BmsI GCATC 2 cut(s) 502, 592
BpiI GAAGAC 1 cut(s) 323
Bpu1102I GCTNAGC 1 cut(s) 324
BsaI GGTCTC 1 cut(s) 455
Bsc4I CCNNNNNNNGG 2 cut(s) 371, 604
Bse1I ACTGG 1 cut(s) 136
Bse21I CCTNAGG 1 cut(s) 447
BseBI CCWGG 1 cut(s) 235
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 2 cut(s) 371, 604
BseMII CTCAG 6 cut(s) 24, 105, 338, 461, 548, 651
BseNI ACTGG 1 cut(s) 136
BsgI GTGCAG 1 cut(s) 411
BshFI GGCC 1 cut(s) 258
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 2 cut(s) 371, 604
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 1 cut(s) 258
Bso31I GGTCTC 1 cut(s) 455
Bsp1407I TGTACA 1 cut(s) 144
Bsp143I GATC 2 cut(s) 134, 553
Bsp1720I GCTNAGC 1 cut(s) 324
BspACI CCGC 2 cut(s) 321, 605
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 6 cut(s) 23, 106, 337, 460, 549, 650
BspLI GGNNCC 1 cut(s) 453
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 1 cut(s) 142
BspTNI GGTCTC 1 cut(s) 455
BsrBI CCGCTC 1 cut(s) 323
BsrGI TGTACA 1 cut(s) 144
BsrI ACTGG 1 cut(s) 136
BssMI GATC 2 cut(s) 134, 553
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 3 cut(s) 290, 407, 587
BstAUI TGTACA 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 256, 426
BstDEI CTNAG 6 cut(s) 10, 114, 324, 447, 557, 637
BstEII GGTNACC 1 cut(s) 284
BstF5I GGATG 1 cut(s) 106
BstKTI GATC 2 cut(s) 137, 556
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 2 cut(s) 134, 553
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNI CCWGG 1 cut(s) 235
BstPI GGTNACC 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 233
BstSFI CTRYAG 1 cut(s) 456
BstV2I GAAGAC 1 cut(s) 323
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
Bsu36I CCTNAGG 1 cut(s) 447
BsuI GTATCC 1 cut(s) 217
BsuRI GGCC 1 cut(s) 258
BtsCI GGATG 1 cut(s) 106
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 2 cut(s) 256, 426
Cfr13I GGNCC 1 cut(s) 452
Csp6I GTAC 2 cut(s) 145, 561
CviAII CATG 1 cut(s) 599
CviQI GTAC 2 cut(s) 145, 561
DdeI CTNAG 6 cut(s) 10, 114, 324, 447, 557, 637
DpnI GATC 2 cut(s) 136, 555
DpnII GATC 2 cut(s) 134, 553
EaeI YGGCCR 1 cut(s) 256
Eco31I GGTCTC 1 cut(s) 455
Eco47I GGWCC 1 cut(s) 452
Eco57I CTGAAG 2 cut(s) 321, 351
Eco81I CCTNAGG 1 cut(s) 447
Eco91I GGTNACC 1 cut(s) 284
EcoO109I RGGNCCY 1 cut(s) 452
EcoO65I GGTNACC 1 cut(s) 284
EcoRI GAATTC 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 233
FaeI CATG 1 cut(s) 602
FaiI YATR 5 cut(s) 84, 435, 600, 626, 650
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FaqI GGGAC 1 cut(s) 230
FatI CATG 1 cut(s) 598
FokI GGATG 1 cut(s) 93
FspBI CTAG 1 cut(s) 521
HaeIII GGCC 1 cut(s) 258
Hin1II CATG 1 cut(s) 602
HinfI GANTC 1 cut(s) 509
HphI GGTGA 2 cut(s) 238, 296
Hpy166II GTNNAC 1 cut(s) 410
Hpy188I TCNGA 4 cut(s) 115, 498, 558, 640
Hpy188III TCNNGA 2 cut(s) 93, 339
Hpy8I GTNNAC 1 cut(s) 410
HpyAV CCTTC 3 cut(s) 154, 375, 602
HpyCH4III ACNGT 3 cut(s) 290, 407, 587
HpyCH4IV ACGT 3 cut(s) 165, 227, 430
HpyCH4V TGCA 4 cut(s) 428, 485, 493, 592
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 6 cut(s) 10, 114, 324, 447, 557, 637
HpySE526I ACGT 3 cut(s) 165, 227, 430
Hsp92II CATG 1 cut(s) 602
Kzo9I GATC 2 cut(s) 134, 553
LweI GCATC 2 cut(s) 502, 592
MaeI CTAG 1 cut(s) 521
MaeII ACGT 3 cut(s) 165, 227, 430
MaeIII GTNAC 4 cut(s) 121, 244, 272, 284
MalI GATC 2 cut(s) 136, 555
MbiI CCGCTC 1 cut(s) 323
MboI GATC 2 cut(s) 134, 553
MboII GAAGA 1 cut(s) 328
MflI RGATCY 1 cut(s) 553
MluCI AATT 2 cut(s) 238, 503
MlyI GAGTC 1 cut(s) 503
MnlI CCTC 9 cut(s) 17, 25, 32, 63, 121, 143, 409, 456, 644
MseI TTAA 3 cut(s) 57, 354, 570
MslI CAYNNNNRTG 2 cut(s) 498, 623
MspA1I CMGCKG 1 cut(s) 371
MspR9I CCNGG 1 cut(s) 235
MvaI CCWGG 1 cut(s) 235
MwoI GCNNNNNNNGC 1 cut(s) 368
NdeII GATC 2 cut(s) 134, 553
NlaIII CATG 1 cut(s) 602
NlaIV GGNNCC 1 cut(s) 453
NmuCI GTSAC 2 cut(s) 244, 284
PleI GAGTC 1 cut(s) 503
PpsI GAGTC 1 cut(s) 503
PpuMI RGGWCCY 1 cut(s) 452
PshBI ATTAAT 1 cut(s) 354
PsiI TTATAA 1 cut(s) 435
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 233
PspEI GGTNACC 1 cut(s) 284
PspGI CCWGG 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 453
PspPI GGNCC 1 cut(s) 452
PspPPI RGGWCCY 1 cut(s) 452
PsuI RGATCY 1 cut(s) 553
PvuII CAGCTG 1 cut(s) 371
RsaI GTAC 2 cut(s) 146, 562
RsaNI GTAC 2 cut(s) 145, 561
RseI CAYNNNNRTG 2 cut(s) 498, 623
SaqAI TTAA 3 cut(s) 57, 354, 570
Sau3AI GATC 2 cut(s) 134, 553
Sau96I GGNCC 1 cut(s) 452
ScaI AGTACT 1 cut(s) 562
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 1 cut(s) 235
SetI ASST 9 cut(s) 123, 168, 230, 256, 330, 373, 420, 433, 636
SfaNI GCATC 2 cut(s) 502, 592
SfcI CTRYAG 1 cut(s) 456
SinI GGWCC 1 cut(s) 452
SmiMI CAYNNNNRTG 2 cut(s) 498, 623
Sse9I AATT 2 cut(s) 238, 503
SsiI CCGC 2 cut(s) 321, 605
SspI AATATT 1 cut(s) 141
SspMI CTAG 1 cut(s) 521
StyD4I CCNGG 1 cut(s) 233
TaaI ACNGT 3 cut(s) 290, 407, 587
TaiI ACGT 3 cut(s) 168, 230, 433
TaqI TCGA 1 cut(s) 512
TasI AATT 2 cut(s) 238, 503
TatI WGTACW 2 cut(s) 144, 560
Tru1I TTAA 3 cut(s) 57, 354, 570
Tru9I TTAA 3 cut(s) 57, 354, 570
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 2 cut(s) 244, 284
Tsp45I GTSAC 2 cut(s) 244, 284
TspDTI ATGAA 2 cut(s) 516, 549
TspRI CASTG 1 cut(s) 81
VpaK11BI GGWCC 1 cut(s) 452
VspI ATTAAT 1 cut(s) 354
XapI RAATTY 1 cut(s) 238
XcmI CCANNNNNNNNNTGG 1 cut(s) 472
XspI CTAG 1 cut(s) 521
ZrmI AGTACT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.