MD02G1286700.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
34363273 .. 34369018
5746 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1286700.v1.1.491

Sequence Viewer

Length: 240 bp
ATGGGTTTGCGTGTTTATGGTAGGGGTGCAAACCGAAACAAATTGGTGGTCCATACTATGTATCCACCTGCAAATCGTAGTAATCCGCCGAAAGAAAAAGTTATGCTGGATAAAACACTTTCACAACGCTTTTTGGGGTTTTCCAATGGCATCCACATGTTTGCTAGCTGGAAAAAGGTTGGAGTTTTGTTGCTCTTGCTTGCCTCCGCCGCAACGGCCTTTGGAGTTTTAAATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.7

Weight (kDa)

11.11

Isoelectric Point (pI)

24.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0022376)

Species Orthologous Gene IDs
malus_domestica MD02G1286700.v1.1 MD08G1140500.v1.1 MD08G1235000.v1.1
pyrus_communis pycom02g17580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 76
Acc36I ACCTGC 1 cut(s) 76
AciI CCGC 3 cut(s) 86, 207, 210
AflIII ACRYGT 1 cut(s) 156
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
AoxI GGCC 1 cut(s) 216
ArsI GACNNNNNNTTYG 2 cut(s) 33, 65
AspS9I GGNCC 1 cut(s) 49
AsuNHI GCTAGC 1 cut(s) 164
AvaII GGWCC 1 cut(s) 49
BceAI ACGGC 1 cut(s) 231
BciVI GTATCC 1 cut(s) 72
BfaI CTAG 2 cut(s) 165, 238
BfuAI ACCTGC 1 cut(s) 76
BfuI GTATCC 1 cut(s) 72
BglI GCCNNNNNGGC 1 cut(s) 215
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 49
BmsI GCATC 1 cut(s) 159
BmtI GCTAGC 1 cut(s) 168
BseGI GGATG 1 cut(s) 150
BshFI GGCC 1 cut(s) 218
BsnI GGCC 1 cut(s) 218
BspACI CCGC 3 cut(s) 86, 207, 210
BspANI GGCC 1 cut(s) 218
BspMI ACCTGC 1 cut(s) 76
BspOI GCTAGC 1 cut(s) 168
BstC8I GCNNGC 2 cut(s) 166, 201
BstF5I GGATG 1 cut(s) 150
BstMWI GCNNNNNNNGC 2 cut(s) 209, 215
BstNSI RCATGY 1 cut(s) 160
BsuI GTATCC 1 cut(s) 72
BsuRI GGCC 1 cut(s) 218
BtsCI GGATG 1 cut(s) 150
BveI ACCTGC 1 cut(s) 76
Cac8I GCNNGC 2 cut(s) 166, 201
Cfr13I GGNCC 1 cut(s) 49
CviAII CATG 1 cut(s) 157
CviJI RGCY 2 cut(s) 168, 218
CviKI_1 RGCY 2 cut(s) 168, 218
DraI TTTAAA 1 cut(s) 231
EciI GGCGGA 2 cut(s) 75, 196
Eco47I GGWCC 1 cut(s) 49
FaeI CATG 1 cut(s) 160
FaiI YATR 5 cut(s) 18, 54, 59, 104, 158
FatI CATG 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 2 cut(s) 165, 238
GluI GCNGC 1 cut(s) 210
HaeIII GGCC 1 cut(s) 218
Hin1II CATG 1 cut(s) 160
HpyCH4V TGCA 2 cut(s) 29, 71
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 215
Hsp92II CATG 1 cut(s) 160
LpnPI CCDG 3 cut(s) 81, 92, 154
LweI GCATC 1 cut(s) 159
MaeI CTAG 2 cut(s) 165, 238
MluCI AATT 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 1 cut(s) 214
MseI TTAA 1 cut(s) 230
MslI CAYNNNNRTG 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 209, 215
NheI GCTAGC 1 cut(s) 164
NlaIII CATG 1 cut(s) 160
NspI RCATGY 1 cut(s) 160
PaqCI CACCTGC 1 cut(s) 76
PciI ACATGT 1 cut(s) 156
PkrI GCNGC 1 cut(s) 211
PscI ACATGT 1 cut(s) 156
PspPI GGNCC 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 1 cut(s) 210
Sau96I GGNCC 1 cut(s) 49
SetI ASST 3 cut(s) 70, 170, 180
SfaNI GCATC 1 cut(s) 159
SgeI CNNG 8 cut(s) 23, 80, 119, 169, 177, 181, 208, 212
SinI GGWCC 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 1 cut(s) 41
SsiI CCGC 3 cut(s) 86, 207, 210
SspMI CTAG 2 cut(s) 165, 238
TasI AATT 1 cut(s) 41
TauI GCSGC 1 cut(s) 212
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 49
XceI RCATGY 1 cut(s) 160
XspI CTAG 2 cut(s) 165, 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.