MD08G1235000.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
30206140 .. 30208006
1867 bp
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UTR
Exon/CDS
Intron
MD08G1235000.v1.1.491

Sequence Viewer

Length: 198 bp
ATGGGTTTGCGTGTTTATGGTAAAGGTCCGAACCGAAACAAGTTGGTGGTCCATACTATGTATCGACCTGCAAATCGTAGTAATCCACAGAAAGAAAAAGTTCCATTGGATGATAATGTTTTGCAACGATTTTTGGGGTTTTTTCGTGGGATGTTCAAGTTTGGTTGTTGCAAAGAGGTTGGAGTTTTGTTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.52

Weight (kDa)

10.23

Isoelectric Point (pI)

28.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022376)

Species Orthologous Gene IDs
malus_domestica MD02G1286700.v1.1 MD08G1140500.v1.1 MD08G1235000.v1.1
pyrus_communis pycom02g17580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 76
AgsI TTSAA 1 cut(s) 157
Asp700I GAANNNNTTC 1 cut(s) 99
AspS9I GGNCC 2 cut(s) 26, 49
AvaII GGWCC 2 cut(s) 26, 49
BfaI CTAG 1 cut(s) 196
BfuAI ACCTGC 1 cut(s) 76
Bme18I GGWCC 2 cut(s) 26, 49
BmgT120I GGNCC 2 cut(s) 26, 49
BseGI GGATG 2 cut(s) 115, 156
BspMI ACCTGC 1 cut(s) 76
BstF5I GGATG 2 cut(s) 115, 156
BtsCI GGATG 2 cut(s) 115, 156
BveI ACCTGC 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 26, 49
Eco47I GGWCC 2 cut(s) 26, 49
FaiI YATR 3 cut(s) 18, 54, 59
FokI GGATG 2 cut(s) 122, 163
FspBI CTAG 1 cut(s) 196
Hpy188I TCNGA 1 cut(s) 30
HpyCH4V TGCA 3 cut(s) 71, 124, 171
LpnPI CCDG 1 cut(s) 81
MaeI CTAG 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 1 cut(s) 169
MroXI GAANNNNTTC 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 99
PspPI GGNCC 2 cut(s) 26, 49
Sau96I GGNCC 2 cut(s) 26, 49
SetI ASST 3 cut(s) 28, 70, 180
SgeI CNNG 5 cut(s) 23, 52, 80, 158, 169
SinI GGWCC 2 cut(s) 26, 49
SspMI CTAG 1 cut(s) 196
TaqI TCGA 1 cut(s) 64
VpaK11BI GGWCC 2 cut(s) 26, 49
XmnI GAANNNNTTC 1 cut(s) 99
XspI CTAG 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.