MD08G1140500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0022376
Physical Location & Seq
Forward (+)
13704047 .. 13710043
5997 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1140500.v1.1.491

Sequence Viewer

Length: 267 bp
ATGGGTTTGCGTGTTTATGGTAAAGGTCCGAATCGGAACAAGTTGGTGGTCCATACTATGTATCGACCTGCAAATCGTACTAATCCGCCGAAAGAAAAAGTTCCGATGAATGATAATGTTTTGCAACGATTTTTGGGGTTTTTTCGTGGAATGTTCAAGTTTGATCGTTCGAAAAAGGTTGGAGTTTTGTTGTTCTTGCTTGCCTCTGCTGCAACAACCTTTTGGGTTCTAAATGTCTTGAGACGACGTGGGTCATGGATAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.28

Weight (kDa)

11.94

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022376)

Species Orthologous Gene IDs
malus_domestica MD02G1286700.v1.1 MD08G1140500.v1.1 MD08G1235000.v1.1
pyrus_communis pycom02g17580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 76
AciI CCGC 1 cut(s) 86
AfaI GTAC 1 cut(s) 79
AgsI TTSAA 1 cut(s) 157
AjiI CACGTC 1 cut(s) 248
Alw26I GTCTC 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 209
Asp700I GAANNNNTTC 1 cut(s) 99
AspS9I GGNCC 2 cut(s) 26, 49
AsuII TTCGAA 1 cut(s) 170
AvaII GGWCC 2 cut(s) 26, 49
BbvI GCAGC 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 235
BfuAI ACCTGC 1 cut(s) 76
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme18I GGWCC 2 cut(s) 26, 49
BmgBI CACGTC 1 cut(s) 248
BmgT120I GGNCC 2 cut(s) 26, 49
BoxI GACNNNNGTC 1 cut(s) 250
Bpu14I TTCGAA 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 259
BseXI GCAGC 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 235
BsmBI CGTCTC 1 cut(s) 235
Bsp119I TTCGAA 1 cut(s) 170
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 1 cut(s) 86
BspMI ACCTGC 1 cut(s) 76
BspT104I TTCGAA 1 cut(s) 170
BssMI GATC 1 cut(s) 163
BstBI TTCGAA 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 201
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstPAI GACNNNNGTC 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 196
BtrI CACGTC 1 cut(s) 248
BveI ACCTGC 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 201
Cfr13I GGNCC 2 cut(s) 26, 49
Csp6I GTAC 1 cut(s) 78
CviAII CATG 1 cut(s) 255
CviQI GTAC 1 cut(s) 78
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
EciI GGCGGA 1 cut(s) 75
Eco47I GGWCC 2 cut(s) 26, 49
Esp3I CGTCTC 1 cut(s) 235
FaeI CATG 1 cut(s) 258
FaiI YATR 4 cut(s) 18, 54, 59, 256
FatI CATG 1 cut(s) 254
Fnu4HI GCNGC 1 cut(s) 210
Fsp4HI GCNGC 1 cut(s) 210
GluI GCNGC 1 cut(s) 210
Hin1II CATG 1 cut(s) 258
HinfI GANTC 1 cut(s) 31
Hpy188I TCNGA 3 cut(s) 30, 36, 105
Hpy188III TCNNGA 1 cut(s) 238
Hpy99I CGWCG 1 cut(s) 249
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 3 cut(s) 71, 124, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpySE526I ACGT 1 cut(s) 247
Hsp92II CATG 1 cut(s) 258
Kzo9I GATC 1 cut(s) 163
LpnPI CCDG 1 cut(s) 81
Lsp1109I GCAGC 1 cut(s) 196
MaeII ACGT 1 cut(s) 247
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 1 cut(s) 214
MroXI GAANNNNTTC 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeII GATC 1 cut(s) 163
NlaIII CATG 1 cut(s) 258
NspV TTCGAA 1 cut(s) 170
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 31
PkrI GCNGC 1 cut(s) 211
PshAI GACNNNNGTC 1 cut(s) 250
PspPI GGNCC 2 cut(s) 26, 49
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 2 cut(s) 26, 49
SetI ASST 5 cut(s) 28, 70, 180, 221, 250
SfuI TTCGAA 1 cut(s) 170
SgeI CNNG 9 cut(s) 23, 52, 80, 158, 169, 208, 212, 250, 260
SinI GGWCC 2 cut(s) 26, 49
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
SsiI CCGC 1 cut(s) 86
TaiI ACGT 1 cut(s) 250
TaqI TCGA 2 cut(s) 64, 170
TfiI GAWTC 1 cut(s) 31
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 122
VpaK11BI GGWCC 2 cut(s) 26, 49
XmnI GAANNNNTTC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.