pycom02g17580

Belongs to the helicase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0022376
Physical Location & Seq
Reverse (-)
15703220 .. 15704956
1737 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g17580.1

Sequence Viewer

Length: 630 bp
ATGTATTCACCTACAAATCGTAGTAATCCACCAAAAGAAAATGTTCAAAAAAACTGTTTTGGGTTGTACAATTGGATTTGCAAGTTTAAACGTCCGAAGAAGATTGGGATGCTCCTTCTTTGGTTCATCTCCACTGTTTTTGCAATTAATTCCTCACACTTGCCAGTGATTCCTTTTGCAACTGCAAACTGTGTTATGCCTAGGAAACTCAGAATACCTGGGAAGGTTGCTGAAATTCAGCATGCCAATTTGCGCATCTTTAATGGTGATGTTTATCCAGATGATGTGGTTTTGCAAGATGTCCCAACTTCTTACGATCAAGAATATAACAATGTTTCAAACTCTTTACTATCACATGACAATACAACCAATCCTGTTCAACCATATACATCTTTTTTGAAACAAAATGCATCTGTTAGCGATGAATTCAACTCATCTTCGTCTGTTGCTAGCACTTCACATGAAATCACTGTCCCTATTTTTCTTGCGAATGATGCCACTTTGCGTGTTATATTGGTCACTGATACTGAAGCTGGTCATTCTGTGGTGTTCCAGATTATATTGATTTTGGCCCTAGAAATTTTCAATGTCAATATTGTGGCACTTTATTTTGGTCTACAGAGCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460
Pfam Domains
Protein Families
Helitron_like_N Herpes_Helicase PIF1

Protein Analysis

210

Amino Acids

23.38

Weight (kDa)

6.19

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022376)

Species Orthologous Gene IDs
malus_domestica MD02G1286700.v1.1 MD08G1140500.v1.1 MD08G1235000.v1.1
pyrus_communis pycom02g17580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 254
AccI GTMKAC 1 cut(s) 616
AcsI RAATTY 3 cut(s) 234, 425, 579
AcuI CTGAAG 1 cut(s) 549
AfaI GTAC 1 cut(s) 68
AgsI TTSAA 6 cut(s) 47, 339, 380, 400, 430, 586
AjnI CCWGG 1 cut(s) 217
AluBI AGCT 1 cut(s) 533
AluI AGCT 1 cut(s) 533
AoxI GGCC 1 cut(s) 570
ApoI RAATTY 3 cut(s) 234, 425, 579
AseI ATTAAT 1 cut(s) 147
Asp700I GAANNNNTTC 1 cut(s) 42
AspA2I CCTAGG 1 cut(s) 200
AspLEI GCGC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 571
AsuHPI GGTGA 1 cut(s) 278
AsuNHI GCTAGC 1 cut(s) 449
AvrII CCTAGG 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 219
BfaI CTAG 3 cut(s) 201, 450, 575
BfmI CTRYAG 1 cut(s) 617
BlnI CCTAGG 1 cut(s) 200
Bme1390I CCNGG 1 cut(s) 219
BmgT120I GGNCC 1 cut(s) 571
BmrFI CCNGG 1 cut(s) 219
BmsI GCATC 4 cut(s) 99, 264, 419, 484
BmtI GCTAGC 1 cut(s) 453
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 200, 218
Bse1I ACTGG 1 cut(s) 164
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 2 cut(s) 200, 218
BseGI GGATG 1 cut(s) 114
BseJI GATNNNNATC 1 cut(s) 273
BseMII CTCAG 1 cut(s) 223
BseNI ACTGG 1 cut(s) 164
BshFI GGCC 1 cut(s) 572
BslFI GGGAC 2 cut(s) 287, 458
BsmFI GGGAC 2 cut(s) 287, 458
BsnI GGCC 1 cut(s) 572
Bsp1407I TGTACA 1 cut(s) 66
Bsp143I GATC 1 cut(s) 316
BspANI GGCC 1 cut(s) 572
BspCNI CTCAG 1 cut(s) 222
BspOI GCTAGC 1 cut(s) 453
BsrGI TGTACA 1 cut(s) 66
BsrI ACTGG 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 200, 218
BssMI GATC 1 cut(s) 316
BssT1I CCWWGG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 4 cut(s) 56, 136, 191, 472
BstAUI TGTACA 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 243, 451
BstDEI CTNAG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 114
BstHHI GCGC 1 cut(s) 255
BstKTI GATC 1 cut(s) 319
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNI CCWGG 1 cut(s) 219
BstNSI RCATGY 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 217
BstSFI CTRYAG 1 cut(s) 617
BsuRI GGCC 1 cut(s) 572
BtgZI GCGATG 1 cut(s) 435
BtsCI GGATG 1 cut(s) 114
BtsIMutI CAGTG 4 cut(s) 132, 171, 468, 519
Cac8I GCNNGC 2 cut(s) 243, 451
CfoI GCGC 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 571
Csp6I GTAC 1 cut(s) 67
CspCI CAANNNNNGTGG 2 cut(s) 121, 156
CviAII CATG 3 cut(s) 242, 356, 461
CviJI RGCY 2 cut(s) 533, 572
CviKI_1 RGCY 2 cut(s) 533, 572
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 1 cut(s) 209
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
DraI TTTAAA 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 549
EcoRI GAATTC 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 200
EcoT22I ATGCAT 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 3 cut(s) 245, 359, 464
FaiI YATR 9 cut(s) 197, 243, 327, 357, 385, 387, 462, 512, 560
FaqI GGGAC 2 cut(s) 287, 458
FatI CATG 3 cut(s) 241, 355, 460
FblI GTMKAC 1 cut(s) 616
FokI GGATG 1 cut(s) 121
FspBI CTAG 3 cut(s) 201, 450, 575
FspI TGCGCA 1 cut(s) 254
GlaI GCGC 1 cut(s) 254
HaeIII GGCC 1 cut(s) 572
HhaI GCGC 1 cut(s) 255
Hin1II CATG 3 cut(s) 245, 359, 464
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HinfI GANTC 1 cut(s) 169
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 617
Hpy188I TCNGA 2 cut(s) 96, 212
Hpy188III TCNNGA 3 cut(s) 278, 320, 553
Hpy8I GTNNAC 1 cut(s) 617
HpyAV CCTTC 2 cut(s) 125, 217
HpyCH4III ACNGT 4 cut(s) 56, 136, 191, 472
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 6 cut(s) 81, 143, 179, 185, 295, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 1 cut(s) 209
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 3 cut(s) 245, 359, 464
HspAI GCGC 1 cut(s) 253
Kzo9I GATC 1 cut(s) 316
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 7 cut(s) 177, 204, 231, 291, 387, 519, 566
LweI GCATC 4 cut(s) 99, 264, 419, 484
MaeI CTAG 3 cut(s) 201, 450, 575
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 1 cut(s) 517
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 3 cut(s) 109, 112, 429
MfeI CAATTG 1 cut(s) 70
MluCI AATT 7 cut(s) 70, 144, 148, 234, 247, 425, 579
MnlI CCTC 1 cut(s) 163
Mph1103I ATGCAT 1 cut(s) 412
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 4 cut(s) 87, 147, 261, 628
MspR9I CCNGG 1 cut(s) 219
MssI GTTTAAAC 1 cut(s) 88
MunI CAATTG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 494
NdeII GATC 1 cut(s) 316
NheI GCTAGC 1 cut(s) 449
NlaIII CATG 3 cut(s) 245, 359, 464
NmuCI GTSAC 1 cut(s) 517
NsbI TGCGCA 1 cut(s) 254
NsiI ATGCAT 1 cut(s) 412
NspI RCATGY 1 cut(s) 245
PaeI GCATGC 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 169
PmeI GTTTAAAC 1 cut(s) 88
PshBI ATTAAT 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspPI GGNCC 1 cut(s) 571
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SaqAI TTAA 4 cut(s) 87, 147, 261, 628
Sau3AI GATC 1 cut(s) 316
Sau96I GGNCC 1 cut(s) 571
ScrFI CCNGG 1 cut(s) 219
SetI ASST 5 cut(s) 13, 94, 220, 228, 535
SfaNI GCATC 4 cut(s) 99, 264, 419, 484
SfcI CTRYAG 1 cut(s) 617
SphI GCATGC 1 cut(s) 245
Sse9I AATT 7 cut(s) 70, 144, 148, 234, 247, 425, 579
SspI AATATT 1 cut(s) 595
SspMI CTAG 3 cut(s) 201, 450, 575
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 4 cut(s) 56, 136, 191, 472
TaiI ACGT 1 cut(s) 94
TasI AATT 7 cut(s) 70, 144, 148, 234, 247, 425, 579
TatI WGTACW 1 cut(s) 66
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 4 cut(s) 87, 147, 261, 628
Tru9I TTAA 4 cut(s) 87, 147, 261, 628
TscAI CASTG 4 cut(s) 139, 171, 475, 526
TseFI GTSAC 1 cut(s) 517
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 3 cut(s) 115, 438, 477
TspRI CASTG 4 cut(s) 139, 171, 475, 526
VspI ATTAAT 1 cut(s) 147
XapI RAATTY 3 cut(s) 234, 425, 579
XceI RCATGY 1 cut(s) 245
XmaJI CCTAGG 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 616
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 3 cut(s) 201, 450, 575
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.