Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0018502

Physical Location & Seq

Genomic Coordinates Reverse (-)

37305111 .. 37307268

Gene Structure 2158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1318700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGAGCTTTGTTTGAGCTTAGGAGATCATAAGGCTCTTGCAGAGCCATCTGATCAGACCACCACCACCACCAAAACGACAGGGTTTTGCATGAACTTATCAATCGGTCCAAGCTGTGCAGCTGCTACTCCTCCTCCTCCTCCTCCTCCTAGAGATGAAGAAGCAGATAAAAAACGAGATGATGATGATGATGATGATGATGATGATCATATCCATGTAGATGACCATATACCACTTCAACTTGATCTTCTCCCTTGGCCTACTTCTCCTTGTAATCAGATTCAAAACGCTGGTGTGCTGTCCATGAACGTGATCAACAAAGCTCAGGAAGTGGTGGCTGCTGCGTCGTCATCGCATACAAACAGTGGTTCGTCGTCGTTTCATATCATGGATATCGGCTTATGCAGCAATAATAATCACAGTAAGGGCAGTGCTGGTGATGGCCTGAATAACAATTACCACAACGTCTACAACTACAAGAGGAGGGCTCACTCCGCAGAAGGACAAGGCGATGATGAGGGAGAAAGGGCATCTAATTCCAGGGTGGGCAGTGATGATGAGGAGGATGACATCATCAATGGTAACGCTAACACCTGTAGAAAGAAGCTCAGGCTCTCCAAGGAACAATCTGCTTTTCTTGAAGAAAGCTTCAAAGAACACCATACTCTCAACCCTAAGCAAAAGCTAGCACTGGCGAAACAGCTTAATCTTCGTCCAAGACAAGTAGAAGTTTGGTTTCAGAATAGAAGAGCAAGAACAAAGTTGAAGCAAACGGAGGTGGACTGTGAGTTCCTGAAGAGATGTTGTGAGACACTGACGGAAGAGAACAGAAGGCTAAACAAAGAGCTACAGGAGTTGAGGGCTTTGAAGGCTACTCATCACTCAAACCCGTTCTACATGCAATCACCAGCCACCACCCTCACCCTGTGTCCTTCTTGCGAGCGCACAGCTACCACCTCTAACGCCGCCATCAACACCACCAACAATACTTATAACAATAATAATAATAAAGTCTTGTCAATTAGTACTACAAAAGTCCAAGCAGCTAAGTTCCCTCTCAACAGACCCAGCTTCTATCCGTTTTTTCAACCCAAATCCCACCCCTCTTCCGCAGCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

374

Amino Acids

41.4

Weight (kDa)

6.06

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	200 - 254	1.4e-15	Homeodomain
HALZ	PF02183	256 - 290	2e-10	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018502)

Species	Orthologous Gene IDs
malus_domestica	MD02G1318700.v1.1 MD07G1002500.v1.1
prunus_persica	Prupe.2G004000_v2.0.a1 Prupe.2G004000_v2.0.a1 Prupe.2G004000_v2.0.a1 Prupe.2G004000_v2.0.a1 Prupe.2G004000_v2.0.a1 Prupe.2G004000_v2.0.a1
pyrus_communis	pycom02g26700 pycom07g00250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	993
AccI	GTMKAC	1 cut(s)	468
AciI	CCGC	3 cut(s)	495, 966, 1110
AcuI	CTGAAG	1 cut(s)	815
AdeI	CACNNNGTG	1 cut(s)	927
AfaI	GTAC	1 cut(s)	1027
AgsI	TTSAA	7 cut(s)	239, 284, 641, 652, 766, 868, 1088
AjnI	CCWGG	1 cut(s)	539
AloI	GAACNNNNNNTCC	2 cut(s)	773, 805
Alw26I	GTCTC	1 cut(s)	803
AoxI	GGCC	2 cut(s)	257, 442
ApeKI	GCWGC	7 cut(s)	119, 122, 338, 341, 405, 1043, 1112
AspLEI	GCGC	1 cut(s)	945
AspS9I	GGNCC	1 cut(s)	107
AsuHPI	GGTGA	3 cut(s)	449, 897, 913
AsuNHI	GCTAGC	1 cut(s)	685
AvaII	GGWCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	490
BbvI	GCAGC	6 cut(s)	109, 131, 325, 328, 417, 1055
BccI	CCATC	3 cut(s)	55, 434, 977
BciT130I	CCWGG	1 cut(s)	541
BclI	TGATCA	3 cut(s)	52, 205, 312
BcoDI	GTCTC	1 cut(s)	803
BfaI	CTAG	2 cut(s)	150, 686
BfmI	CTRYAG	2 cut(s)	595, 848
BisI	GCNGC	8 cut(s)	120, 123, 339, 342, 406, 966, 1044, 1113
BlsI	GCNGC	8 cut(s)	121, 124, 340, 343, 407, 967, 1045, 1114
BmcAI	AGTACT	1 cut(s)	1027
Bme1390I	CCNGG	1 cut(s)	541
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	541
BmsI	GCATC	1 cut(s)	539
BmtI	GCTAGC	1 cut(s)	689
BplI	GAGNNNNNCTC	2 cut(s)	472, 504
Bpu10I	CCTNAGC	4 cut(s)	19, 324, 608, 675
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	3 cut(s)	254, 540, 618
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bse1I	ACTGG	1 cut(s)	696
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	541
BseDI	CCNNGG	3 cut(s)	254, 540, 618
BseGI	GGATG	1 cut(s)	571
BseJI	GATNNNNATC	1 cut(s)	204
BseMII	CTCAG	2 cut(s)	338, 622
BseNI	ACTGG	1 cut(s)	696
BseRI	GAGGAG	8 cut(s)	120, 123, 126, 129, 132, 135, 496, 575
BseXI	GCAGC	6 cut(s)	109, 131, 325, 328, 417, 1055
BseYI	CCCAGC	1 cut(s)	1067
BsgI	GTGCAG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	259, 444
BsmAI	GTCTC	1 cut(s)	803
BsnI	GGCC	2 cut(s)	259, 444
Bsp1286I	GDGCHC	1 cut(s)	490
Bsp143I	GATC	5 cut(s)	25, 52, 205, 244, 312
BspACI	CCGC	3 cut(s)	495, 966, 1110
BspANI	GGCC	2 cut(s)	259, 444
BspCNI	CTCAG	2 cut(s)	337, 621
BspHI	TCATGA	1 cut(s)	1118
BspOI	GCTAGC	1 cut(s)	689
BspQI	GCTCTTC	1 cut(s)	742
BsrI	ACTGG	1 cut(s)	696
BssECI	CCNNGG	3 cut(s)	254, 540, 618
BssMI	GATC	5 cut(s)	25, 52, 205, 244, 312
BssT1I	CCWWGG	2 cut(s)	254, 618
Bst2UI	CCWGG	1 cut(s)	541
Bst4CI	ACNGT	3 cut(s)	365, 422, 785
Bst6I	CTCTTC	4 cut(s)	742, 791, 816, 1111
BstC8I	GCNNGC	2 cut(s)	687, 941
BstDEI	CTNAG	5 cut(s)	19, 324, 608, 675, 1047
BstF5I	GGATG	1 cut(s)	571
BstHHI	GCGC	1 cut(s)	945
BstKTI	GATC	5 cut(s)	28, 55, 208, 247, 315
BstMAI	GTCTC	1 cut(s)	803
BstMBI	GATC	5 cut(s)	25, 52, 205, 244, 312
BstMWI	GCNNNNNNNGC	3 cut(s)	405, 494, 869
BstNI	CCWGG	1 cut(s)	541
BstNSI	RCATGY	1 cut(s)	901
BstSCI	CCNGG	1 cut(s)	539
BstSFI	CTRYAG	2 cut(s)	595, 848
BstV1I	GCAGC	6 cut(s)	109, 131, 325, 328, 417, 1055
BsuRI	GGCC	2 cut(s)	259, 444
BtgZI	GCGATG	2 cut(s)	336, 525
BtsCI	GGATG	1 cut(s)	571
BtsI	GCAGTG	2 cut(s)	436, 556
BtsIMutI	CAGTG	5 cut(s)	370, 436, 556, 689, 812
Cac8I	GCNNGC	2 cut(s)	687, 941
CciI	TCATGA	1 cut(s)	1118
CfoI	GCGC	1 cut(s)	945
Cfr13I	GGNCC	1 cut(s)	107
CseI	GACGC	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	1026
CviAII	CATG	6 cut(s)	91, 215, 304, 388, 898, 1119
CviQI	GTAC	1 cut(s)	1026
DdeI	CTNAG	5 cut(s)	19, 324, 608, 675, 1047
DpnI	GATC	5 cut(s)	27, 54, 207, 246, 314
DpnII	GATC	5 cut(s)	25, 52, 205, 244, 312
DraIII	CACNNNGTG	1 cut(s)	927
Eam1104I	CTCTTC	4 cut(s)	742, 791, 816, 1111
EarI	CTCTTC	4 cut(s)	742, 791, 816, 1111
Eco130I	CCWWGG	2 cut(s)	254, 618
Eco24I	GRGCYC	1 cut(s)	490
Eco32I	GATATC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	815
EcoRII	CCWGG	1 cut(s)	539
EcoRV	GATATC	1 cut(s)	394
EcoT14I	CCWWGG	2 cut(s)	254, 618
EcoT38I	GRGCYC	1 cut(s)	490
ErhI	CCWWGG	2 cut(s)	254, 618
FaeI	CATG	6 cut(s)	94, 218, 307, 391, 901, 1122
FatI	CATG	6 cut(s)	90, 214, 303, 387, 897, 1118
FbaI	TGATCA	3 cut(s)	52, 205, 312
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	8 cut(s)	120, 123, 339, 342, 406, 966, 1044, 1113
FokI	GGATG	1 cut(s)	578
FriOI	GRGCYC	1 cut(s)	490
Fsp4HI	GCNGC	8 cut(s)	120, 123, 339, 342, 406, 966, 1044, 1113
FspBI	CTAG	2 cut(s)	150, 686
GlaI	GCGC	1 cut(s)	944
GluI	GCNGC	8 cut(s)	120, 123, 339, 342, 406, 966, 1044, 1113
GsaI	CCCAGC	1 cut(s)	1071
HaeIII	GGCC	2 cut(s)	259, 444
HgaI	GACGC	1 cut(s)	333
HhaI	GCGC	1 cut(s)	945
Hin1II	CATG	6 cut(s)	94, 218, 307, 391, 901, 1122
Hin6I	GCGC	1 cut(s)	943
HinP1I	GCGC	1 cut(s)	943
HindIII	AAGCTT	1 cut(s)	646
HinfI	GANTC	1 cut(s)	280
HphI	GGTGA	3 cut(s)	449, 897, 913
Hpy166II	GTNNAC	2 cut(s)	469, 781
Hpy188I	TCNGA	4 cut(s)	52, 57, 279, 741
Hpy188III	TCNNGA	4 cut(s)	326, 638, 793, 1119
Hpy8I	GTNNAC	2 cut(s)	469, 781
Hpy99I	CGWCG	3 cut(s)	349, 376, 379
HpyAV	CCTTC	4 cut(s)	494, 825, 862, 942
HpyCH4III	ACNGT	3 cut(s)	365, 422, 785
HpyCH4IV	ACGT	2 cut(s)	309, 465
HpyCH4V	TGCA	5 cut(s)	41, 90, 119, 405, 901
HpyF10VI	GCNNNNNNNGC	3 cut(s)	405, 494, 869
HpyF3I	CTNAG	5 cut(s)	19, 324, 608, 675, 1047
HpySE526I	ACGT	2 cut(s)	309, 465
Hsp92II	CATG	6 cut(s)	94, 218, 307, 391, 901, 1122
HspAI	GCGC	1 cut(s)	943
Ksp22I	TGATCA	3 cut(s)	52, 205, 312
Kzo9I	GATC	5 cut(s)	25, 52, 205, 244, 312
LguI	GCTCTTC	1 cut(s)	742
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	6 cut(s)	109, 131, 325, 328, 417, 1055
LweI	GCATC	1 cut(s)	539
MaeI	CTAG	2 cut(s)	150, 686
MaeII	ACGT	2 cut(s)	309, 465
MaeIII	GTNAC	1 cut(s)	581
MalI	GATC	5 cut(s)	27, 54, 207, 246, 314
MboI	GATC	5 cut(s)	25, 52, 205, 244, 312
MboII	GAAGA	8 cut(s)	170, 239, 653, 701, 759, 808, 833, 1098
MhlI	GDGCHC	1 cut(s)	490
MluCI	AATT	3 cut(s)	454, 535, 1020
MseI	TTAA	1 cut(s)	705
MslI	CAYNNNNRTG	3 cut(s)	213, 219, 308
MspA1I	CMGCKG	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	541
MvaI	CCWGG	1 cut(s)	541
MwoI	GCNNNNNNNGC	3 cut(s)	405, 494, 869
NdeII	GATC	5 cut(s)	25, 52, 205, 244, 312
NheI	GCTAGC	1 cut(s)	685
NlaIII	CATG	6 cut(s)	94, 218, 307, 391, 901, 1122
NspI	RCATGY	1 cut(s)	901
PagI	TCATGA	1 cut(s)	1118
PciSI	GCTCTTC	1 cut(s)	742
PfeI	GAWTC	1 cut(s)	280
PkrI	GCNGC	8 cut(s)	121, 124, 340, 343, 407, 967, 1045, 1114
PsiI	TTATAA	1 cut(s)	993
Psp6I	CCWGG	1 cut(s)	539
PspFI	CCCAGC	1 cut(s)	1067
PspGI	CCWGG	1 cut(s)	539
PspPI	GGNCC	1 cut(s)	107
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	1 cut(s)	1027
RsaNI	GTAC	1 cut(s)	1026
RseI	CAYNNNNRTG	3 cut(s)	213, 219, 308
SapI	GCTCTTC	1 cut(s)	742
SaqAI	TTAA	1 cut(s)	705
SatI	GCNGC	8 cut(s)	120, 123, 339, 342, 406, 966, 1044, 1113
Sau3AI	GATC	5 cut(s)	25, 52, 205, 244, 312
Sau96I	GGNCC	1 cut(s)	107
ScaI	AGTACT	1 cut(s)	1027
ScrFI	CCNGG	1 cut(s)	541
SduI	GDGCHC	1 cut(s)	490
SfaNI	GCATC	1 cut(s)	539
SfcI	CTRYAG	2 cut(s)	595, 848
SinI	GGWCC	1 cut(s)	107
SmiMI	CAYNNNNRTG	3 cut(s)	213, 219, 308
Sse9I	AATT	3 cut(s)	454, 535, 1020
SsiI	CCGC	3 cut(s)	495, 966, 1110
SspMI	CTAG	2 cut(s)	150, 686
StyD4I	CCNGG	1 cut(s)	539
StyI	CCWWGG	2 cut(s)	254, 618
TaaI	ACNGT	3 cut(s)	365, 422, 785
TaiI	ACGT	2 cut(s)	312, 468
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	3 cut(s)	454, 535, 1020
TatI	WGTACW	1 cut(s)	1025
TauI	GCSGC	1 cut(s)	968
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	705
Tru9I	TTAA	1 cut(s)	705
TscAI	CASTG	5 cut(s)	370, 436, 556, 696, 819
TseI	GCWGC	7 cut(s)	119, 122, 338, 341, 405, 1043, 1112
TspDTI	ATGAA	5 cut(s)	107, 171, 320, 371, 1107
TspGWI	ACGGA	3 cut(s)	788, 833, 1068
TspRI	CASTG	5 cut(s)	370, 436, 556, 696, 819
VpaK11BI	GGWCC	1 cut(s)	107
XceI	RCATGY	1 cut(s)	901
XmiI	GTMKAC	1 cut(s)	468
XspI	CTAG	2 cut(s)	150, 686
ZrmI	AGTACT	1 cut(s)	1027

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.