Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0018502

Physical Location & Seq

Genomic Coordinates Forward (+)

275880 .. 277826

Gene Structure 1947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1002500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGAGCTTTGTTTGAGCTTAGGAGGTCATGAGGAACCTGCAGAGCGATCAGATCAGAACACCACCACCACCACCAAAACGACAGAGTTTTGTATGAGCTTATCAATCGGTCCAAGCTGTGCAGCTGGTACTACTAGTACTCCTCATCCTCCTCCAAGACATGAAGCAGCTGCAGCAGATAAAAAGCAAGATGATGATGATGGTGATCATATCCATGTAGATGATCATGTACCACTTCAACTTGATCTTCTCCTTTGGCCTACTCCTCCTTGTAATCAGATTCAAAACGCTGGTGTGCTGTCCATGAACGTGATCAACAGAGTTGAGGAAGTGGTGGCTGCTGCGTCGTCATCGCACACAAACAGTGGTTCGTCGTCGTTTCAGATCATGGATATCGGCAGTAATAATCACAGCAAGGGCAGTGCAGGTGATGATCTGAATAATAATTACCACAACGTCTACAACTACAAGAGGATGGCTCACTCTGCAGAAGCACAAGGAGATGATGAGGGAGAAAGGGCATCTAATTCCAGGGTGGGCAGCGATGAGGTGGAGGATGACATCATCAATGGTAACACTAACACCTCTAGAAAGAAGCTCAGGCTCTCCAAGGAACAATCTGCTTTTCTTGAAGAAAGTTTCAAAGAACACCATACTCTCAATCCTAAGCAAAAGCTGGCACTGGCGAAACAGCTTAGTCTTCGTCCAAGACAAGTTGAAGTTTGGTTTCAGAATAAAAGAGCAAGGACAAAGTTGAAGCAAACGGAGGTTGACTGTGAGTTCCTAAAGAGATGTTGCGAGACACTGACGGAAGAGAACAGAAGGCTAAACAAAGAGCTACAAGAGTTGAGGGCTTTGAAGGCTACTCATCACTCAAACCCATTCTCCATGCAATCACCAGCCACCACCCTCACCATGTGTCCTTCCTGCGAGCGCACAGCCACCACCGCTAACCCAGCCAGCAAAACCACCAACAATACTAATAACAATAATAATAATAAAGTTGAGTCAACTAGTACTACAAAAGTCCAAGCAGCTAAGTTCCCTCTCAAAAGACCCAGCTTCTATCCATTTTTTCAACCCAAATCCCACTCCTCTTCCGCAGCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

371

Amino Acids

40.91

Weight (kDa)

6.44

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	197 - 251	1.2e-14	Homeodomain
HALZ	PF02183	253 - 287	2e-10	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018502)

Species	Orthologous Gene IDs
malus_domestica	MD02G1318700.v1.1 MD07G1002500.v1.1
prunus_persica	Prupe.2G004000_v2.0.a1 Prupe.2G004000_v2.0.a1 Prupe.2G004000_v2.0.a1 Prupe.2G004000_v2.0.a1 Prupe.2G004000_v2.0.a1 Prupe.2G004000_v2.0.a1
pyrus_communis	pycom02g26700 pycom07g00250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	416
Acc36I	ACCTGC	2 cut(s)	46, 416
AccI	GTMKAC	1 cut(s)	459
AciI	CCGC	2 cut(s)	948, 1101
AdeI	CACNNNGTG	1 cut(s)	918
AfaI	GTAC	4 cut(s)	130, 139, 231, 1018
AgsI	TTSAA	8 cut(s)	239, 284, 632, 643, 719, 757, 859, 1079
AhlI	ACTAGT	2 cut(s)	134, 1013
AjnI	CCWGG	1 cut(s)	530
Alw26I	GTCTC	1 cut(s)	794
AoxI	GGCC	1 cut(s)	257
ApeKI	GCWGC	9 cut(s)	122, 167, 170, 173, 338, 341, 540, 1034, 1103
AspLEI	GCGC	1 cut(s)	936
AspS9I	GGNCC	1 cut(s)	110
AsuHPI	GGTGA	4 cut(s)	215, 440, 888, 904
AvaII	GGWCC	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	692
BbvI	GCAGC	8 cut(s)	134, 157, 179, 185, 325, 328, 552, 1046
BccI	CCATC	2 cut(s)	194, 469
BciT130I	CCWGG	1 cut(s)	532
BclI	TGATCA	3 cut(s)	205, 223, 312
BcoDI	GTCTC	1 cut(s)	794
BcuI	ACTAGT	2 cut(s)	134, 1013
BfaI	CTAG	3 cut(s)	135, 588, 1014
BfmI	CTRYAG	3 cut(s)	39, 171, 486
BfuAI	ACCTGC	2 cut(s)	46, 416
BisI	GCNGC	9 cut(s)	123, 168, 171, 174, 339, 342, 541, 1035, 1104
BlsI	GCNGC	9 cut(s)	124, 169, 172, 175, 340, 343, 542, 1036, 1105
BmcAI	AGTACT	2 cut(s)	139, 1018
Bme1390I	CCNGG	1 cut(s)	532
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	532
BmsI	GCATC	1 cut(s)	530
BpiI	GAAGAC	1 cut(s)	692
BplI	GAGNNNNNCTC	2 cut(s)	463, 495
Bpu10I	CCTNAGC	3 cut(s)	19, 599, 666
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	531, 609
BsaXI	ACNNNNNCTCC	4 cut(s)	124, 154, 869, 899
Bse1I	ACTGG	1 cut(s)	687
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	532
BseDI	CCNNGG	2 cut(s)	531, 609
BseGI	GGATG	3 cut(s)	145, 480, 562
BseJI	GATNNNNATC	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	613
BseNI	ACTGG	1 cut(s)	687
BseRI	GAGGAG	4 cut(s)	132, 141, 255, 1084
BseXI	GCAGC	8 cut(s)	134, 157, 179, 185, 325, 328, 552, 1046
BseYI	CCCAGC	2 cut(s)	955, 1058
BsgI	GTGCAG	2 cut(s)	141, 444
BshFI	GGCC	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	794
BsnI	GGCC	1 cut(s)	259
Bsp143I	GATC	8 cut(s)	47, 52, 205, 223, 244, 312, 384, 433
BspACI	CCGC	2 cut(s)	948, 1101
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	1 cut(s)	612
BspHI	TCATGA	2 cut(s)	28, 1109
BspLI	GGNNCC	1 cut(s)	36
BspMAI	CTGCAG	3 cut(s)	43, 175, 490
BspMI	ACCTGC	2 cut(s)	46, 416
BsrI	ACTGG	1 cut(s)	687
BssECI	CCNNGG	2 cut(s)	531, 609
BssMI	GATC	8 cut(s)	47, 52, 205, 223, 244, 312, 384, 433
BssT1I	CCWWGG	1 cut(s)	609
Bst2UI	CCWGG	1 cut(s)	532
Bst4CI	ACNGT	2 cut(s)	365, 776
Bst6I	CTCTTC	2 cut(s)	807, 1102
BstC8I	GCNNGC	3 cut(s)	678, 932, 961
BstDEI	CTNAG	5 cut(s)	19, 599, 666, 695, 1038
BstF5I	GGATG	3 cut(s)	145, 480, 562
BstHHI	GCGC	1 cut(s)	936
BstKTI	GATC	8 cut(s)	50, 55, 208, 226, 247, 315, 387, 436
BstMAI	GTCTC	1 cut(s)	794
BstMBI	GATC	8 cut(s)	47, 52, 205, 223, 244, 312, 384, 433
BstMWI	GCNNNNNNNGC	5 cut(s)	173, 485, 860, 947, 956
BstNI	CCWGG	1 cut(s)	532
BstSCI	CCNGG	1 cut(s)	530
BstSFI	CTRYAG	3 cut(s)	39, 171, 486
BstV1I	GCAGC	8 cut(s)	134, 157, 179, 185, 325, 328, 552, 1046
BstV2I	GAAGAC	1 cut(s)	692
BsuRI	GGCC	1 cut(s)	259
BtgZI	GCGATG	2 cut(s)	336, 558
BtsCI	GGATG	3 cut(s)	145, 480, 562
BtsI	GCAGTG	1 cut(s)	427
BtsIMutI	CAGTG	4 cut(s)	370, 427, 680, 803
BveI	ACCTGC	2 cut(s)	46, 416
Cac8I	GCNNGC	3 cut(s)	678, 932, 961
CciI	TCATGA	2 cut(s)	28, 1109
CfoI	GCGC	1 cut(s)	936
Cfr13I	GGNCC	1 cut(s)	110
CseI	GACGC	1 cut(s)	333
Csp6I	GTAC	4 cut(s)	129, 138, 230, 1017
CviAII	CATG	9 cut(s)	29, 161, 215, 227, 304, 388, 889, 916, 1110
CviQI	GTAC	4 cut(s)	129, 138, 230, 1017
DdeI	CTNAG	5 cut(s)	19, 599, 666, 695, 1038
DpnI	GATC	8 cut(s)	49, 54, 207, 225, 246, 314, 386, 435
DpnII	GATC	8 cut(s)	47, 52, 205, 223, 244, 312, 384, 433
DraIII	CACNNNGTG	1 cut(s)	918
Eam1104I	CTCTTC	2 cut(s)	807, 1102
EarI	CTCTTC	2 cut(s)	807, 1102
Eco130I	CCWWGG	1 cut(s)	609
Eco32I	GATATC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	530
EcoRV	GATATC	1 cut(s)	394
EcoT14I	CCWWGG	1 cut(s)	609
ErhI	CCWWGG	1 cut(s)	609
FaeI	CATG	9 cut(s)	32, 164, 218, 230, 307, 391, 892, 919, 1113
FatI	CATG	9 cut(s)	28, 160, 214, 226, 303, 387, 888, 915, 1109
FbaI	TGATCA	3 cut(s)	205, 223, 312
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	9 cut(s)	123, 168, 171, 174, 339, 342, 541, 1035, 1104
FokI	GGATG	3 cut(s)	132, 487, 569
Fsp4HI	GCNGC	9 cut(s)	123, 168, 171, 174, 339, 342, 541, 1035, 1104
FspBI	CTAG	3 cut(s)	135, 588, 1014
GlaI	GCGC	1 cut(s)	935
GluI	GCNGC	9 cut(s)	123, 168, 171, 174, 339, 342, 541, 1035, 1104
GsaI	CCCAGC	2 cut(s)	959, 1062
HaeIII	GGCC	1 cut(s)	259
HgaI	GACGC	1 cut(s)	333
HhaI	GCGC	1 cut(s)	936
Hin1II	CATG	9 cut(s)	32, 164, 218, 230, 307, 391, 892, 919, 1113
Hin6I	GCGC	1 cut(s)	934
HinP1I	GCGC	1 cut(s)	934
HincII	GTYRAC	2 cut(s)	772, 1011
HindII	GTYRAC	2 cut(s)	772, 1011
HinfI	GANTC	2 cut(s)	280, 1007
HphI	GGTGA	4 cut(s)	215, 440, 888, 904
Hpy166II	GTNNAC	3 cut(s)	460, 772, 1011
Hpy188I	TCNGA	6 cut(s)	52, 57, 279, 384, 438, 732
Hpy188III	TCNNGA	4 cut(s)	29, 588, 629, 1110
Hpy8I	GTNNAC	3 cut(s)	460, 772, 1011
Hpy99I	CGWCG	3 cut(s)	349, 376, 379
HpyAV	CCTTC	3 cut(s)	816, 853, 933
HpyCH4III	ACNGT	2 cut(s)	365, 776
HpyCH4IV	ACGT	2 cut(s)	309, 456
HpyCH4V	TGCA	6 cut(s)	41, 122, 173, 425, 488, 892
HpyF10VI	GCNNNNNNNGC	5 cut(s)	173, 485, 860, 947, 956
HpyF3I	CTNAG	5 cut(s)	19, 599, 666, 695, 1038
HpySE526I	ACGT	2 cut(s)	309, 456
Hsp92II	CATG	9 cut(s)	32, 164, 218, 230, 307, 391, 892, 919, 1113
HspAI	GCGC	1 cut(s)	934
Ksp22I	TGATCA	3 cut(s)	205, 223, 312
Kzo9I	GATC	8 cut(s)	47, 52, 205, 223, 244, 312, 384, 433
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	8 cut(s)	134, 157, 179, 185, 325, 328, 552, 1046
LweI	GCATC	1 cut(s)	530
MaeI	CTAG	3 cut(s)	135, 588, 1014
MaeII	ACGT	2 cut(s)	309, 456
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	8 cut(s)	49, 54, 207, 225, 246, 314, 386, 435
MboI	GATC	8 cut(s)	47, 52, 205, 223, 244, 312, 384, 433
MboII	GAAGA	5 cut(s)	239, 644, 692, 824, 1089
MluCI	AATT	2 cut(s)	445, 526
MlyI	GAGTC	1 cut(s)	1016
MslI	CAYNNNNRTG	3 cut(s)	213, 219, 308
MspA1I	CMGCKG	2 cut(s)	125, 170
MspR9I	CCNGG	1 cut(s)	532
MvaI	CCWGG	1 cut(s)	532
MwoI	GCNNNNNNNGC	5 cut(s)	173, 485, 860, 947, 956
NdeII	GATC	8 cut(s)	47, 52, 205, 223, 244, 312, 384, 433
NlaIII	CATG	9 cut(s)	32, 164, 218, 230, 307, 391, 892, 919, 1113
NlaIV	GGNNCC	1 cut(s)	36
PagI	TCATGA	2 cut(s)	28, 1109
PaqCI	CACCTGC	1 cut(s)	416
PfeI	GAWTC	1 cut(s)	280
PkrI	GCNGC	9 cut(s)	124, 169, 172, 175, 340, 343, 542, 1036, 1105
PleI	GAGTC	1 cut(s)	1015
PpsI	GAGTC	1 cut(s)	1015
Psp6I	CCWGG	1 cut(s)	530
PspFI	CCCAGC	2 cut(s)	955, 1058
PspGI	CCWGG	1 cut(s)	530
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	110
PstI	CTGCAG	3 cut(s)	43, 175, 490
PvuII	CAGCTG	2 cut(s)	125, 170
RsaI	GTAC	4 cut(s)	130, 139, 231, 1018
RsaNI	GTAC	4 cut(s)	129, 138, 230, 1017
RseI	CAYNNNNRTG	3 cut(s)	213, 219, 308
SatI	GCNGC	9 cut(s)	123, 168, 171, 174, 339, 342, 541, 1035, 1104
Sau3AI	GATC	8 cut(s)	47, 52, 205, 223, 244, 312, 384, 433
Sau96I	GGNCC	1 cut(s)	110
ScaI	AGTACT	2 cut(s)	139, 1018
SchI	GAGTC	1 cut(s)	1016
ScrFI	CCNGG	1 cut(s)	532
SfaNI	GCATC	1 cut(s)	530
SfcI	CTRYAG	3 cut(s)	39, 171, 486
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	3 cut(s)	213, 219, 308
SpeI	ACTAGT	2 cut(s)	134, 1013
Sse9I	AATT	2 cut(s)	445, 526
SsiI	CCGC	2 cut(s)	948, 1101
SspMI	CTAG	3 cut(s)	135, 588, 1014
StyD4I	CCNGG	1 cut(s)	530
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	2 cut(s)	365, 776
TaiI	ACGT	2 cut(s)	312, 459
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	2 cut(s)	445, 526
TatI	WGTACW	2 cut(s)	137, 1016
TfiI	GAWTC	1 cut(s)	280
TscAI	CASTG	4 cut(s)	370, 427, 687, 810
TseI	GCWGC	9 cut(s)	122, 167, 170, 173, 338, 341, 540, 1034, 1103
TspDTI	ATGAA	3 cut(s)	177, 320, 1098
TspGWI	ACGGA	2 cut(s)	779, 824
TspRI	CASTG	4 cut(s)	370, 427, 687, 810
VpaK11BI	GGWCC	1 cut(s)	110
XbaI	TCTAGA	1 cut(s)	587
XmiI	GTMKAC	1 cut(s)	459
XspI	CTAG	3 cut(s)	135, 588, 1014
ZrmI	AGTACT	2 cut(s)	139, 1018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.