Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0018502

Physical Location & Seq

Genomic Coordinates Reverse (-)

24497356 .. 24498858

Gene Structure 1503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g26700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGATCATACACCACTTCAACTTGATCTTCTCCCTTGGCCTACTTCTTCTTGTAATCAGATTCAAAACGCTGGTGTGCTGTCCATCGAACGTGATCAACAAAGCTCAGGAAGTGGTGGCTGCTGCGTCGTCATCGCATACAAACAGTGGTTCGTCGTCGTTTCATATCATGGATATCGGCTTATGCAGCAATAATAATCACAGTAAGGGCAGTGCTGGTGATGGTCTGAATAACCACAACGTCTACAACTACAAGAGGAGGGCTCACTCCGCAGAAGGACAAGGCGATGATGAGGGAGAAAGGGCATATAATTCCAGGGTGGGCAGTGATGATGAGGAGGATGACATCATCAATGGTAACGCTAACACCTGTAGAAAGAAGCTCAGGCTCTCCAAGGAACAATCTGCTTTTCTTGAAGAAAGCTTCAAAGAACACCATACTCTCAACCCTAAGCAAAAGCTAGCACTGGCGAAACAGCTTAATCTTCGTCCAAGACAAGTAGAAGTTTGGTTTCAGAATAGAAGAGCAAGGACAAAGTTGAAGCAAACGGAGGTGGACTGTGAGTTCCTGAAGAGATGTTGTGAGACACTGACGGAAGAGAACAGAAGGCTAAACAAAGAGCTACAGGAGTTGAGGGCTTTGAAGGCTACTCATCACTCAAACCCGTTCTACATGCAATCACCAGCCACCACCCTCACCATGTGTCCTTCTTGCGAGAGCACAGCTACCACCTCTAACGCCGCCATCAACACCACCAACAATACTTATAACAATAATAATAATAAAGTTATGTCAATTAGTACTACAAAAGTTCAAGCAGCTAAGTTTCCTCTCAACAGACCCAGCTTCTATCCGTTTTTTCAACCCAAATCCCATCCCTCTTCCGCAGCTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

299

Amino Acids

33.45

Weight (kDa)

9.11

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018502)

Species	Orthologous Gene IDs
malus_domestica	MD02G1318700.v1.1 MD07G1002500.v1.1
prunus_persica	Prupe.2G004000_v2.0.a1 Prupe.2G004000_v2.0.a1 Prupe.2G004000_v2.0.a1 Prupe.2G004000_v2.0.a1 Prupe.2G004000_v2.0.a1 Prupe.2G004000_v2.0.a1
pyrus_communis	pycom02g26700 pycom07g00250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	768
AccI	GTMKAC	1 cut(s)	243
AciI	CCGC	3 cut(s)	270, 741, 885
AcuI	CTGAAG	1 cut(s)	590
AdeI	CACNNNGTG	1 cut(s)	702
AfaI	GTAC	1 cut(s)	802
AgsI	TTSAA	8 cut(s)	19, 64, 416, 427, 541, 643, 815, 863
AjnI	CCWGG	1 cut(s)	314
AloI	GAACNNNNNNTCC	2 cut(s)	548, 580
Alw21I	GWGCWC	1 cut(s)	722
Alw26I	GTCTC	1 cut(s)	578
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	5 cut(s)	119, 122, 186, 818, 887
AsuHPI	GGTGA	3 cut(s)	230, 672, 688
AsuNHI	GCTAGC	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	722
BbvI	GCAGC	4 cut(s)	106, 109, 198, 830
BccI	CCATC	4 cut(s)	91, 215, 752, 882
BciT130I	CCWGG	1 cut(s)	316
BclI	TGATCA	2 cut(s)	3, 93
BcoDI	GTCTC	1 cut(s)	578
BfaI	CTAG	1 cut(s)	461
BfmI	CTRYAG	2 cut(s)	370, 623
BisI	GCNGC	6 cut(s)	120, 123, 187, 741, 819, 888
BlsI	GCNGC	6 cut(s)	121, 124, 188, 742, 820, 889
BmcAI	AGTACT	1 cut(s)	802
Bme1390I	CCNGG	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	316
BmtI	GCTAGC	1 cut(s)	464
BplI	GAGNNNNNCTC	2 cut(s)	247, 279
Bpu10I	CCTNAGC	3 cut(s)	105, 383, 450
BsaJI	CCNNGG	3 cut(s)	34, 315, 393
Bse1I	ACTGG	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	316
BseDI	CCNNGG	3 cut(s)	34, 315, 393
BseGI	GGATG	2 cut(s)	346, 874
BseMII	CTCAG	2 cut(s)	119, 397
BseNI	ACTGG	1 cut(s)	471
BseRI	GAGGAG	2 cut(s)	271, 350
BseXI	GCAGC	4 cut(s)	106, 109, 198, 830
BseYI	CCCAGC	1 cut(s)	842
BshFI	GGCC	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	722
BsmAI	GTCTC	1 cut(s)	578
BsnI	GGCC	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	265, 722
Bsp143I	GATC	3 cut(s)	3, 24, 93
BspACI	CCGC	3 cut(s)	270, 741, 885
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	2 cut(s)	118, 396
BspOI	GCTAGC	1 cut(s)	464
BspQI	GCTCTTC	1 cut(s)	517
BsrI	ACTGG	1 cut(s)	471
BssECI	CCNNGG	3 cut(s)	34, 315, 393
BssMI	GATC	3 cut(s)	3, 24, 93
BssT1I	CCWWGG	2 cut(s)	34, 393
Bst2UI	CCWGG	1 cut(s)	316
Bst4CI	ACNGT	3 cut(s)	146, 203, 560
Bst6I	CTCTTC	4 cut(s)	517, 566, 591, 886
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	4 cut(s)	105, 383, 450, 822
BstF5I	GGATG	2 cut(s)	346, 874
BstKTI	GATC	3 cut(s)	6, 27, 96
BstMAI	GTCTC	1 cut(s)	578
BstMBI	GATC	3 cut(s)	3, 24, 93
BstMWI	GCNNNNNNNGC	3 cut(s)	186, 269, 644
BstNI	CCWGG	1 cut(s)	316
BstNSI	RCATGY	1 cut(s)	676
BstSCI	CCNGG	1 cut(s)	314
BstSFI	CTRYAG	2 cut(s)	370, 623
BstV1I	GCAGC	4 cut(s)	106, 109, 198, 830
BsuRI	GGCC	1 cut(s)	39
BtgZI	GCGATG	2 cut(s)	117, 300
BtsCI	GGATG	2 cut(s)	346, 874
BtsI	GCAGTG	2 cut(s)	217, 331
BtsIMutI	CAGTG	5 cut(s)	151, 217, 331, 464, 587
Cac8I	GCNNGC	1 cut(s)	462
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	801
CviAII	CATG	3 cut(s)	169, 673, 700
CviQI	GTAC	1 cut(s)	801
DdeI	CTNAG	4 cut(s)	105, 383, 450, 822
DpnI	GATC	3 cut(s)	5, 26, 95
DpnII	GATC	3 cut(s)	3, 24, 93
DraIII	CACNNNGTG	1 cut(s)	702
Eam1104I	CTCTTC	4 cut(s)	517, 566, 591, 886
EarI	CTCTTC	4 cut(s)	517, 566, 591, 886
Eco130I	CCWWGG	2 cut(s)	34, 393
Eco24I	GRGCYC	1 cut(s)	265
Eco32I	GATATC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	590
EcoRII	CCWGG	1 cut(s)	314
EcoRV	GATATC	1 cut(s)	175
EcoT14I	CCWWGG	2 cut(s)	34, 393
EcoT38I	GRGCYC	1 cut(s)	265
ErhI	CCWWGG	2 cut(s)	34, 393
FaeI	CATG	3 cut(s)	172, 676, 703
FatI	CATG	3 cut(s)	168, 672, 699
FbaI	TGATCA	2 cut(s)	3, 93
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	6 cut(s)	120, 123, 187, 741, 819, 888
FokI	GGATG	2 cut(s)	353, 861
FriOI	GRGCYC	1 cut(s)	265
Fsp4HI	GCNGC	6 cut(s)	120, 123, 187, 741, 819, 888
FspBI	CTAG	1 cut(s)	461
GluI	GCNGC	6 cut(s)	120, 123, 187, 741, 819, 888
GsaI	CCCAGC	1 cut(s)	846
HaeIII	GGCC	1 cut(s)	39
HgaI	GACGC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	172, 676, 703
HindIII	AAGCTT	1 cut(s)	421
HinfI	GANTC	1 cut(s)	60
HphI	GGTGA	3 cut(s)	230, 672, 688
Hpy166II	GTNNAC	2 cut(s)	244, 556
Hpy188I	TCNGA	3 cut(s)	59, 228, 516
Hpy188III	TCNNGA	4 cut(s)	107, 413, 568, 894
Hpy8I	GTNNAC	2 cut(s)	244, 556
Hpy99I	CGWCG	3 cut(s)	130, 157, 160
HpyAV	CCTTC	4 cut(s)	269, 600, 637, 717
HpyCH4III	ACNGT	3 cut(s)	146, 203, 560
HpyCH4IV	ACGT	2 cut(s)	90, 240
HpyCH4V	TGCA	2 cut(s)	186, 676
HpyF10VI	GCNNNNNNNGC	3 cut(s)	186, 269, 644
HpyF3I	CTNAG	4 cut(s)	105, 383, 450, 822
HpySE526I	ACGT	2 cut(s)	90, 240
Hsp92II	CATG	3 cut(s)	172, 676, 703
Ksp22I	TGATCA	2 cut(s)	3, 93
Kzo9I	GATC	3 cut(s)	3, 24, 93
LguI	GCTCTTC	1 cut(s)	517
Lsp1109I	GCAGC	4 cut(s)	106, 109, 198, 830
MaeI	CTAG	1 cut(s)	461
MaeII	ACGT	2 cut(s)	90, 240
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	3 cut(s)	5, 26, 95
MboI	GATC	3 cut(s)	3, 24, 93
MboII	GAAGA	8 cut(s)	19, 38, 428, 476, 534, 583, 608, 873
MhlI	GDGCHC	2 cut(s)	265, 722
MluCI	AATT	2 cut(s)	310, 795
MseI	TTAA	1 cut(s)	480
MspR9I	CCNGG	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	316
MwoI	GCNNNNNNNGC	3 cut(s)	186, 269, 644
NdeII	GATC	3 cut(s)	3, 24, 93
NheI	GCTAGC	1 cut(s)	460
NlaIII	CATG	3 cut(s)	172, 676, 703
NspI	RCATGY	1 cut(s)	676
PciSI	GCTCTTC	1 cut(s)	517
PfeI	GAWTC	1 cut(s)	60
PkrI	GCNGC	6 cut(s)	121, 124, 188, 742, 820, 889
PsiI	TTATAA	1 cut(s)	768
Psp6I	CCWGG	1 cut(s)	314
PspFI	CCCAGC	1 cut(s)	842
PspGI	CCWGG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	802
RsaNI	GTAC	1 cut(s)	801
SapI	GCTCTTC	1 cut(s)	517
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	6 cut(s)	120, 123, 187, 741, 819, 888
Sau3AI	GATC	3 cut(s)	3, 24, 93
ScaI	AGTACT	1 cut(s)	802
ScrFI	CCNGG	1 cut(s)	316
SduI	GDGCHC	2 cut(s)	265, 722
SfcI	CTRYAG	2 cut(s)	370, 623
Sse9I	AATT	2 cut(s)	310, 795
SsiI	CCGC	3 cut(s)	270, 741, 885
SspMI	CTAG	1 cut(s)	461
StyD4I	CCNGG	1 cut(s)	314
StyI	CCWWGG	2 cut(s)	34, 393
TaaI	ACNGT	3 cut(s)	146, 203, 560
TaiI	ACGT	2 cut(s)	93, 243
TaqI	TCGA	1 cut(s)	86
TasI	AATT	2 cut(s)	310, 795
TatI	WGTACW	1 cut(s)	800
TauI	GCSGC	1 cut(s)	743
TfiI	GAWTC	1 cut(s)	60
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	5 cut(s)	151, 217, 331, 471, 594
TseI	GCWGC	5 cut(s)	119, 122, 186, 818, 887
TspDTI	ATGAA	1 cut(s)	152
TspGWI	ACGGA	3 cut(s)	563, 608, 843
TspRI	CASTG	5 cut(s)	151, 217, 331, 471, 594
XceI	RCATGY	1 cut(s)	676
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	1 cut(s)	461
ZrmI	AGTACT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.