Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0018502

Physical Location & Seq

Genomic Coordinates Forward (+)

413711 .. 416208

Gene Structure 2498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G004000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGAGCTCTGTTTGAGCTTGGGAGATGTGCAAGCTCCTGCAGAGCCATTTGGGTTAGTCTCATCATCATCATCAGAGAAGCCTCGTGATGATCGGGTCATCATGGCCGCCTCCAAAACGACAGGGTTTTGCATGAGCTTATCAATCGGTCCAAGCTGTGACAGCAGTACGAGTACCAGTCCTAGAGAAGCAGATCAACAACTTGATAGAAATGATCATCAAAATGATGATGATCCAAGTAGGTTTAGTGCTGCTTGTGGTTCCAAATCAGATGTACCAGTCCAACTTGATCTTCTCCCCCACACTCCTGTAGCCCCCAGAAGCAGCAGCCATGGCTTCCCTTGGCCCACTCCTTCAGATCAAAACGTAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGCTCATCAGAAAACGTGAACAGAGTGGAGGAAGTGGCGGCGGTGTCATCGTCGCCGACAAACAGTGGTGCGTCGTCGTTTCAGATGGATATAGGGTTATACAGCAGCAATTACAGGGGCAGTGGAGGAAAGAGGAGTCACTCTCCAGAAGCAGAAGGGGATGAGGGAGAAAGGCAATCTAATTCTAGAGCAAGTGATGAGGATGACATCAATGGCATCAACACCAGGAAGAAGCTCAGGCTCTCTAAAGAACAGTCTGCTTTTCTTGAAGAAAGCTTCAAAGAACACCACACTCTCAACCCTAAGCAAAAGCTAGCGCTGGCAAAACAGCTTAATCTTCGTCCAAGACAAGTAGAAGTTTGGTTCCAGAATAGAAGAGCAAGGACGAAGCTGAAGCAAACGGAGGTTGACTGTGAGTTTCTCAAGAGATGCTGTGAGACACTAACGGAAGAGAACAGAAGGCTACACAAAGAGCTACAGGAGTTGAGGGCTTTGAAGACTCATCATCATTCAAACCCATTCTACATGCAATCACCAGCCACAACCCTCACCATGTGCCCTTCCTGTGAGCGCATCGCCGCCACCACCACCACCACCACCACCAACAACAACAAAACTACTACAAAAGCCCAAGCAGAAGCAGATGGCTTCCCAAGATTCTATCCATTTTGTCAACCCCAATCCCATCACTCTTCTGCAACTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

369

Amino Acids

40.14

Weight (kDa)

6.32

Isoelectric Point (pI)

65.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018502)

Species	Orthologous Gene IDs
malus_domestica	MD02G1318700.v1.1 MD07G1002500.v1.1
prunus_persica	Prupe.2G004000_v2.0.a1 Prupe.2G004000_v2.0.a1 Prupe.2G004000_v2.0.a1 Prupe.2G004000_v2.0.a1 Prupe.2G004000_v2.0.a1 Prupe.2G004000_v2.0.a1
pyrus_communis	pycom02g26700 pycom07g00250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	108, 437, 440, 978
AclWI	GGATC	1 cut(s)	227
AcoI	YGGCCR	1 cut(s)	105
AcuI	CTGAAG	2 cut(s)	339, 812
AdeI	CACNNNGTG	1 cut(s)	954
AfaI	GTAC	3 cut(s)	169, 175, 276
AfeI	AGCGCT	1 cut(s)	717
AgsI	TTSAA	4 cut(s)	668, 679, 895, 912
AjnI	CCWGG	1 cut(s)	623
AjuI	GAANNNNNNNTTGG	2 cut(s)	276, 308
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	2 cut(s)	64, 830
AlwI	GGATC	1 cut(s)	227
Aor51HI	AGCGCT	1 cut(s)	717
AoxI	GGCC	2 cut(s)	105, 344
ApeKI	GCWGC	4 cut(s)	251, 324, 327, 504
AspLEI	GCGC	2 cut(s)	718, 972
AspS9I	GGNCC	2 cut(s)	149, 345
AsuHPI	GGTGA	2 cut(s)	924, 940
AsuNHI	GCTAGC	1 cut(s)	712
AvaII	GGWCC	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	959
BanII	GRGCYC	2 cut(s)	9, 404
BauI	CACGAG	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	902
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	4 cut(s)	238, 336, 339, 516
BccI	CCATC	3 cut(s)	478, 1037, 1092
BciT130I	CCWGG	1 cut(s)	625
BclI	TGATCA	1 cut(s)	214
BcoDI	GTCTC	2 cut(s)	64, 830
BfaI	CTAG	3 cut(s)	183, 585, 713
BfmI	CTRYAG	3 cut(s)	39, 309, 875
BfoI	RGCGCY	1 cut(s)	719
BisI	GCNGC	7 cut(s)	108, 252, 325, 328, 438, 505, 978
BlsI	GCNGC	7 cut(s)	109, 253, 326, 329, 439, 506, 979
Bme1390I	CCNGG	1 cut(s)	625
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	149, 345
BmiI	GGNNCC	2 cut(s)	262, 764
BmrFI	CCNGG	1 cut(s)	625
BmsI	GCATC	3 cut(s)	624, 818, 981
BmtI	GCTAGC	1 cut(s)	716
BpiI	GAAGAC	1 cut(s)	902
BplI	GAGNNNNNCTC	2 cut(s)	526, 558
BpmI	CTGGAG	1 cut(s)	528
Bpu10I	CCTNAGC	2 cut(s)	635, 702
BpuEI	CTTGAG	1 cut(s)	806
BsaBI	GATNNNNATC	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	331, 341
Bse1I	ACTGG	2 cut(s)	177, 278
Bse8I	GATNNNNATC	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	625
BseDI	CCNNGG	2 cut(s)	331, 341
BseGI	GGATG	2 cut(s)	565, 607
BseJI	GATNNNNATC	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	649
BseNI	ACTGG	2 cut(s)	177, 278
BseRI	GAGGAG	9 cut(s)	387, 390, 393, 396, 399, 402, 405, 408, 547
BseSI	GKGCMC	1 cut(s)	959
BseXI	GCAGC	4 cut(s)	238, 336, 339, 516
BshFI	GGCC	2 cut(s)	107, 346
BsiHKAI	GWGCWC	1 cut(s)	9
BsmAI	GTCTC	2 cut(s)	64, 830
BsnI	GGCC	2 cut(s)	107, 346
Bsp1286I	GDGCHC	3 cut(s)	9, 404, 959
Bsp143I	GATC	6 cut(s)	91, 193, 214, 232, 289, 358
Bsp19I	CCATGG	1 cut(s)	331
BspACI	CCGC	4 cut(s)	108, 437, 440, 978
BspANI	GGCC	2 cut(s)	107, 346
BspCNI	CTCAG	1 cut(s)	648
BspHI	TCATGA	1 cut(s)	1103
BspLI	GGNNCC	2 cut(s)	262, 764
BspMAI	CTGCAG	1 cut(s)	43
BspOI	GCTAGC	1 cut(s)	716
BspPI	GGATC	1 cut(s)	227
BspQI	GCTCTTC	1 cut(s)	769
BsrI	ACTGG	2 cut(s)	177, 278
BssECI	CCNNGG	2 cut(s)	331, 341
BssMI	GATC	6 cut(s)	91, 193, 214, 232, 289, 358
BssSI	CACGAG	1 cut(s)	84
BssT1I	CCWWGG	2 cut(s)	331, 341
Bst2BI	CACGAG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	625
Bst4CI	ACNGT	3 cut(s)	464, 654, 812
Bst6I	CTCTTC	3 cut(s)	769, 843, 1096
BstC8I	GCNNGC	3 cut(s)	33, 714, 720
BstDEI	CTNAG	2 cut(s)	635, 702
BstDSI	CCRYGG	1 cut(s)	331
BstF5I	GGATG	2 cut(s)	565, 607
BstH2I	RGCGCY	1 cut(s)	719
BstHHI	GCGC	2 cut(s)	718, 972
BstKTI	GATC	6 cut(s)	94, 196, 217, 235, 292, 361
BstMAI	GTCTC	2 cut(s)	64, 830
BstMBI	GATC	6 cut(s)	91, 193, 214, 232, 289, 358
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 333
BstNI	CCWGG	1 cut(s)	625
BstNSI	RCATGY	1 cut(s)	928
BstSCI	CCNGG	1 cut(s)	623
BstSFI	CTRYAG	3 cut(s)	39, 309, 875
BstSLI	GKGCMC	1 cut(s)	959
BstV1I	GCAGC	4 cut(s)	238, 336, 339, 516
BstV2I	GAAGAC	1 cut(s)	902
BsuRI	GGCC	2 cut(s)	107, 346
BtgI	CCRYGG	1 cut(s)	331
BtgZI	GCGATG	1 cut(s)	958
BtsCI	GGATG	2 cut(s)	565, 607
BtsI	GCAGTG	1 cut(s)	526
BtsIMutI	CAGTG	2 cut(s)	469, 526
Cac8I	GCNNGC	3 cut(s)	33, 714, 720
CciI	TCATGA	1 cut(s)	1103
CfoI	GCGC	2 cut(s)	718, 972
Cfr13I	GGNCC	2 cut(s)	149, 345
CseI	GACGC	1 cut(s)	459
Csp6I	GTAC	3 cut(s)	168, 174, 275
CviAII	CATG	6 cut(s)	103, 133, 332, 925, 952, 1104
CviQI	GTAC	3 cut(s)	168, 174, 275
DdeI	CTNAG	2 cut(s)	635, 702
DpnI	GATC	6 cut(s)	93, 195, 216, 234, 291, 360
DpnII	GATC	6 cut(s)	91, 193, 214, 232, 289, 358
DraIII	CACNNNGTG	1 cut(s)	954
EaeI	YGGCCR	1 cut(s)	105
Eam1104I	CTCTTC	3 cut(s)	769, 843, 1096
EarI	CTCTTC	3 cut(s)	769, 843, 1096
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	2 cut(s)	331, 341
Eco24I	GRGCYC	2 cut(s)	9, 404
Eco47I	GGWCC	1 cut(s)	149
Eco47III	AGCGCT	1 cut(s)	717
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	2 cut(s)	339, 812
EcoICRI	GAGCTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	623
EcoT14I	CCWWGG	2 cut(s)	331, 341
EcoT38I	GRGCYC	2 cut(s)	9, 404
ErhI	CCWWGG	2 cut(s)	331, 341
FaeI	CATG	6 cut(s)	106, 136, 335, 928, 955, 1107
FaiI	YATR	8 cut(s)	104, 134, 333, 491, 499, 926, 953, 1105
FatI	CATG	6 cut(s)	102, 132, 331, 924, 951, 1103
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	7 cut(s)	108, 252, 325, 328, 438, 505, 978
FokI	GGATG	2 cut(s)	572, 614
FriOI	GRGCYC	2 cut(s)	9, 404
Fsp4HI	GCNGC	7 cut(s)	108, 252, 325, 328, 438, 505, 978
FspBI	CTAG	3 cut(s)	183, 585, 713
GlaI	GCGC	2 cut(s)	717, 971
GluI	GCNGC	7 cut(s)	108, 252, 325, 328, 438, 505, 978
GsuI	CTGGAG	1 cut(s)	528
HaeII	RGCGCY	1 cut(s)	719
HaeIII	GGCC	2 cut(s)	107, 346
HgaI	GACGC	1 cut(s)	459
HhaI	GCGC	2 cut(s)	718, 972
Hin1II	CATG	6 cut(s)	106, 136, 335, 928, 955, 1107
Hin6I	GCGC	2 cut(s)	716, 970
HinP1I	GCGC	2 cut(s)	716, 970
HincII	GTYRAC	2 cut(s)	808, 1073
HindII	GTYRAC	2 cut(s)	808, 1073
HindIII	AAGCTT	1 cut(s)	673
HinfI	GANTC	3 cut(s)	535, 898, 1056
HphI	GGTGA	2 cut(s)	924, 940
Hpy166II	GTNNAC	3 cut(s)	418, 808, 1073
Hpy188I	TCNGA	5 cut(s)	76, 271, 358, 409, 483
Hpy188III	TCNNGA	7 cut(s)	86, 545, 585, 665, 766, 823, 1104
Hpy8I	GTNNAC	3 cut(s)	418, 808, 1073
Hpy99I	CGWCG	3 cut(s)	454, 475, 478
HpyAV	CCTTC	4 cut(s)	363, 548, 852, 969
HpyCH4III	ACNGT	3 cut(s)	464, 654, 812
HpyCH4IV	ACGT	2 cut(s)	366, 414
HpyCH4V	TGCA	5 cut(s)	31, 41, 132, 928, 1097
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 333
HpyF3I	CTNAG	2 cut(s)	635, 702
HpySE526I	ACGT	2 cut(s)	366, 414
Hsp92II	CATG	6 cut(s)	106, 136, 335, 928, 955, 1107
HspAI	GCGC	2 cut(s)	716, 970
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	6 cut(s)	91, 193, 214, 232, 289, 358
LguI	GCTCTTC	1 cut(s)	769
LmnI	GCTCC	2 cut(s)	4, 40
Lsp1109I	GCAGC	4 cut(s)	238, 336, 339, 516
LweI	GCATC	3 cut(s)	624, 818, 981
MaeI	CTAG	3 cut(s)	183, 585, 713
MaeII	ACGT	2 cut(s)	366, 414
MaeIII	GTNAC	2 cut(s)	158, 536
MalI	GATC	6 cut(s)	93, 195, 216, 234, 291, 360
MboI	GATC	6 cut(s)	91, 193, 214, 232, 289, 358
MboII	GAAGA	8 cut(s)	284, 640, 680, 728, 786, 860, 907, 1083
MhlI	GDGCHC	3 cut(s)	9, 404, 959
MluCI	AATT	2 cut(s)	508, 580
MlyI	GAGTC	2 cut(s)	544, 892
MmeI	TCCRAC	1 cut(s)	307
MseI	TTAA	1 cut(s)	732
MslI	CAYNNNNRTG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	625
MvaI	CCWGG	1 cut(s)	625
MwoI	GCNNNNNNNGC	2 cut(s)	162, 333
NcoI	CCATGG	1 cut(s)	331
NdeII	GATC	6 cut(s)	91, 193, 214, 232, 289, 358
NheI	GCTAGC	1 cut(s)	712
NlaIII	CATG	6 cut(s)	106, 136, 335, 928, 955, 1107
NlaIV	GGNNCC	2 cut(s)	262, 764
NmuCI	GTSAC	2 cut(s)	158, 536
NspI	RCATGY	1 cut(s)	928
PagI	TCATGA	1 cut(s)	1103
PciSI	GCTCTTC	1 cut(s)	769
PfeI	GAWTC	1 cut(s)	1056
PkrI	GCNGC	7 cut(s)	109, 253, 326, 329, 439, 506, 979
PleI	GAGTC	2 cut(s)	543, 892
PpsI	GAGTC	2 cut(s)	543, 892
Psp124BI	GAGCTC	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	623
PspGI	CCWGG	1 cut(s)	623
PspN4I	GGNNCC	2 cut(s)	262, 764
PspPI	GGNCC	2 cut(s)	149, 345
PstI	CTGCAG	1 cut(s)	43
RsaI	GTAC	3 cut(s)	169, 175, 276
RsaNI	GTAC	3 cut(s)	168, 174, 275
RseI	CAYNNNNRTG	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	9
SapI	GCTCTTC	1 cut(s)	769
SaqAI	TTAA	1 cut(s)	732
SatI	GCNGC	7 cut(s)	108, 252, 325, 328, 438, 505, 978
Sau3AI	GATC	6 cut(s)	91, 193, 214, 232, 289, 358
Sau96I	GGNCC	2 cut(s)	149, 345
SchI	GAGTC	2 cut(s)	544, 892
ScrFI	CCNGG	1 cut(s)	625
SduI	GDGCHC	3 cut(s)	9, 404, 959
SfaNI	GCATC	3 cut(s)	624, 818, 981
SfcI	CTRYAG	3 cut(s)	39, 309, 875
SinI	GGWCC	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
Sse9I	AATT	2 cut(s)	508, 580
SsiI	CCGC	4 cut(s)	108, 437, 440, 978
SspMI	CTAG	3 cut(s)	183, 585, 713
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	623
StyI	CCWWGG	2 cut(s)	331, 341
TaaI	ACNGT	3 cut(s)	464, 654, 812
TaiI	ACGT	2 cut(s)	369, 417
TaqII	GACCGA	1 cut(s)	137
TasI	AATT	2 cut(s)	508, 580
TauI	GCSGC	3 cut(s)	110, 440, 980
TfiI	GAWTC	1 cut(s)	1056
Tru1I	TTAA	1 cut(s)	732
Tru9I	TTAA	1 cut(s)	732
TscAI	CASTG	2 cut(s)	469, 526
TseFI	GTSAC	2 cut(s)	158, 536
TseI	GCWGC	4 cut(s)	251, 324, 327, 504
Tsp45I	GTSAC	2 cut(s)	158, 536
TspDTI	ATGAA	1 cut(s)	1092
TspGWI	ACGGA	2 cut(s)	815, 860
TspRI	CASTG	2 cut(s)	469, 526
VpaK11BI	GGWCC	1 cut(s)	149
XbaI	TCTAGA	1 cut(s)	584
XceI	RCATGY	1 cut(s)	928
XspI	CTAG	3 cut(s)	183, 585, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.