Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0021182

Physical Location & Seq

Genomic Coordinates Reverse (-)

1140974 .. 1142003

Gene Structure 1030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1010300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTCCAAAGCTTCTGATCAAGAAAACAGGATCAATATCAAGTGCCAGTACAACGAGGATGGTCAAAGAACTTTCTTCAGGATGCGGCGTAATGCAAAGCTGCAAAAACTCGTCGATGTATTTTGTACCAAGCGTGACATCGATCCCAAAGCAGTAGATTTCATCTTTGATGGCCAGAGAGTGAACAAAAAGAAAACTCTTGAGCAGCATGGAATCGAAGATAACGATGAGATTGAAGTCTTTTTGCGCGTCGGTGGAGGTGCAGCGATGTTGGAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0031386 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03013 ko05418 map03013 map05418

Pfam Domains

Protein Families

Rad60-SLD

Protein Analysis

94

Amino Acids

10.8

Weight (kDa)

7.76

Isoelectric Point (pI)

56.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	11 - 83	7.2e-09	Ubiquitin family
Rad60-SLD	PF11976	18 - 81	3.9e-18	Ubiquitin-2 like Rad60 SUMO-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0021182)

Species	Orthologous Gene IDs
malus_domestica	MD04G1010300.v1.1
prunus_persica	Prupe.1G009800_v2.0.a1 Prupe.4G277000_v2.0.a1 Prupe.4G277000_v2.0.a1
pyrus_communis	pycom04g00840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	249
AciI	CCGC	1 cut(s)	85
AclWI	GGATC	2 cut(s)	38, 137
AcoI	YGGCCR	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	61
AfaI	GTAC	2 cut(s)	50, 127
AgsI	TTSAA	1 cut(s)	236
AluBI	AGCT	2 cut(s)	11, 100
AluI	AGCT	2 cut(s)	11, 100
AlwI	GGATC	2 cut(s)	38, 137
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	3 cut(s)	100, 205, 263
AspLEI	GCGC	1 cut(s)	249
BalI	TGGCCA	1 cut(s)	174
BbvI	GCAGC	3 cut(s)	87, 217, 275
BccI	CCATC	2 cut(s)	53, 164
BclI	TGATCA	1 cut(s)	16
BisI	GCNGC	4 cut(s)	86, 101, 206, 264
BlsI	GCNGC	4 cut(s)	87, 102, 207, 265
BmsI	GCATC	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	221
Bsa29I	ATCGAT	1 cut(s)	141
BsaBI	GATNNNNATC	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	46
Bse8I	GATNNNNATC	1 cut(s)	35
BseCI	ATCGAT	1 cut(s)	141
BseGI	GGATG	2 cut(s)	64, 87
BseJI	GATNNNNATC	1 cut(s)	35
BseNI	ACTGG	1 cut(s)	46
BseXI	GCAGC	3 cut(s)	87, 217, 275
BsgI	GTGCAG	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	174
BshVI	ATCGAT	1 cut(s)	141
BsnI	GGCC	1 cut(s)	174
Bsp143I	GATC	3 cut(s)	16, 30, 142
BspACI	CCGC	1 cut(s)	85
BspANI	GGCC	1 cut(s)	174
BspDI	ATCGAT	1 cut(s)	141
BspFNI	CGCG	1 cut(s)	249
BspPI	GGATC	2 cut(s)	38, 137
BsrI	ACTGG	1 cut(s)	46
BssMI	GATC	3 cut(s)	16, 30, 142
BstF5I	GGATG	2 cut(s)	64, 87
BstFNI	CGCG	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	3 cut(s)	19, 33, 145
BstMBI	GATC	3 cut(s)	16, 30, 142
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	3 cut(s)	87, 217, 275
Bsu15I	ATCGAT	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	174
BsuTUI	ATCGAT	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	64, 87
CfoI	GCGC	1 cut(s)	249
ClaI	ATCGAT	1 cut(s)	141
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	49, 126
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	3 cut(s)	11, 100, 174
CviKI_1	RGCY	3 cut(s)	11, 100, 174
CviQI	GTAC	2 cut(s)	49, 126
DpnI	GATC	3 cut(s)	18, 32, 144
DpnII	GATC	3 cut(s)	16, 30, 142
EaeI	YGGCCR	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	61
FaeI	CATG	1 cut(s)	212
FaiI	YATR	1 cut(s)	210
FatI	CATG	1 cut(s)	208
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	4 cut(s)	86, 101, 206, 264
FokI	GGATG	2 cut(s)	71, 94
Fsp4HI	GCNGC	4 cut(s)	86, 101, 206, 264
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	4 cut(s)	86, 101, 206, 264
HaeIII	GGCC	1 cut(s)	174
HgaI	GACGC	1 cut(s)	238
HhaI	GCGC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	212
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	1 cut(s)	213
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	3 cut(s)	20, 79, 200
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	2 cut(s)	116, 254
HpyCH4V	TGCA	3 cut(s)	95, 103, 263
Hsp92II	CATG	1 cut(s)	212
HspAI	GCGC	1 cut(s)	247
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	16, 30, 142
LpnPI	CCDG	4 cut(s)	13, 59, 64, 188
Lsp1109I	GCAGC	3 cut(s)	87, 217, 275
LweI	GCATC	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	3 cut(s)	18, 32, 144
MboI	GATC	3 cut(s)	16, 30, 142
MboII	GAAGA	2 cut(s)	67, 230
MlsI	TGGCCA	1 cut(s)	174
MluNI	TGGCCA	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	2 cut(s)	49, 251
Mox20I	TGGCCA	1 cut(s)	174
MscI	TGGCCA	1 cut(s)	174
Msp20I	TGGCCA	1 cut(s)	174
MvnI	CGCG	1 cut(s)	249
NdeII	GATC	3 cut(s)	16, 30, 142
NlaIII	CATG	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	213
PkrI	GCNGC	4 cut(s)	87, 102, 207, 265
RsaI	GTAC	2 cut(s)	50, 127
RsaNI	GTAC	2 cut(s)	49, 126
SatI	GCNGC	4 cut(s)	86, 101, 206, 264
Sau3AI	GATC	3 cut(s)	16, 30, 142
SetI	ASST	3 cut(s)	13, 102, 262
SfaNI	GCATC	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SsiI	CCGC	1 cut(s)	85
TaqI	TCGA	3 cut(s)	114, 141, 216
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	3 cut(s)	100, 205, 263
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.