Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0021182

Physical Location & Seq

Genomic Coordinates Reverse (-)

23136874 .. 23139174

Gene Structure 2301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G277000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCTCCCAAAAACAGAACTCAGACCAACAAAAAAAATAACTCCCAAGAACAGAACTTCTGACCCCAGAAAAAGCTCCCAAGAACAAGAACACAACACAGAGAAAAGAAAAACCCTAGCTCTTAAGATGTCTGGAGGTCGATCTGATGAAGACACTGTGCGTCTCAAAGTTCAGTTCAACAAGGATGGAGTTCAAACTTTTTTCCGGGTTAAACGAAGCACCAAACTGCAAAAACTCATGGAAGCATTCTGTAAAAATCGTTCCCTTGACCCCAAATCAATAGAATTCACGTTTGATAGCGTCCGACTCGAGAAGAACAAAACTCCTGAGCAGCTTGGAATGGAAGATGGTGATCTGATCGATGCCCTTGTGTCCGGTGATGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0031386 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03013 ko05418 map03013 map05418

Pfam Domains

Protein Families

Rad60-SLD

Protein Analysis

130

Amino Acids

14.73

Weight (kDa)

9.64

Isoelectric Point (pI)

60.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021182)

Species	Orthologous Gene IDs
malus_domestica	MD04G1010300.v1.1
prunus_persica	Prupe.1G009800_v2.0.a1 Prupe.4G277000_v2.0.a1 Prupe.4G277000_v2.0.a1
pyrus_communis	pycom04g00840

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	284
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	178, 194
AluBI	AGCT	4 cut(s)	75, 119, 334, 386
AluI	AGCT	4 cut(s)	75, 119, 334, 386
Alw26I	GTCTC	1 cut(s)	167
Ama87I	CYCGRG	1 cut(s)	308
ApeKI	GCWGC	1 cut(s)	331
ApoI	RAATTY	1 cut(s)	284
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	362, 389
AvaI	CYCGRG	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	3 cut(s)	179, 341, 374
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	116
BfrI	CTTAAG	1 cut(s)	122
BisI	GCNGC	1 cut(s)	332
BlsI	GCNGC	1 cut(s)	333
Bme1390I	CCNGG	1 cut(s)	206
BmeT110I	CYCGRG	1 cut(s)	308
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	352
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	153
Bpu10I	CCTNAGC	1 cut(s)	327
BpuMI	CCSGG	1 cut(s)	206
Bsa29I	ATCGAT	1 cut(s)	360
BsaBI	GATNNNNATC	1 cut(s)	351
BsaWI	WCCGGW	1 cut(s)	374
Bse8I	GATNNNNATC	1 cut(s)	351
BseCI	ATCGAT	1 cut(s)	360
BseGI	GGATG	1 cut(s)	190
BseJI	GATNNNNATC	1 cut(s)	351
BseMII	CTCAG	2 cut(s)	34, 318
BseXI	GCAGC	1 cut(s)	343
BshVI	ATCGAT	1 cut(s)	360
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	2 cut(s)	205, 375
BsmAI	GTCTC	1 cut(s)	167
BsmBI	CGTCTC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	308
Bsp143I	GATC	3 cut(s)	140, 352, 357
BspCNI	CTCAG	2 cut(s)	33, 319
BspDI	ATCGAT	1 cut(s)	360
BspTI	CTTAAG	1 cut(s)	122
BssMI	GATC	3 cut(s)	140, 352, 357
Bst4CI	ACNGT	1 cut(s)	157
BstAFI	CTTAAG	1 cut(s)	122
BstDEI	CTNAG	2 cut(s)	20, 327
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	3 cut(s)	143, 355, 360
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	3 cut(s)	140, 352, 357
BstSCI	CCNGG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	343
BstV2I	GAAGAC	1 cut(s)	156
Bsu15I	ATCGAT	1 cut(s)	360
BsuTUI	ATCGAT	1 cut(s)	360
BtsCI	GGATG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	153
ClaI	ATCGAT	1 cut(s)	360
CseI	GACGC	2 cut(s)	149, 289
CviAII	CATG	1 cut(s)	238
CviJI	RGCY	4 cut(s)	75, 119, 334, 386
CviKI_1	RGCY	4 cut(s)	75, 119, 334, 386
DdeI	CTNAG	2 cut(s)	20, 327
DpnI	GATC	3 cut(s)	142, 354, 359
DpnII	GATC	3 cut(s)	140, 352, 357
Eco88I	CYCGRG	1 cut(s)	308
EcoRI	GAATTC	1 cut(s)	284
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	1 cut(s)	241
FaiI	YATR	1 cut(s)	239
FatI	CATG	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	332
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	332
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	1 cut(s)	332
GsuI	CTGGAG	1 cut(s)	153
HapII	CCGG	2 cut(s)	205, 375
HgaI	GACGC	2 cut(s)	149, 289
Hin1II	CATG	1 cut(s)	241
HinfI	GANTC	1 cut(s)	306
HpaII	CCGG	2 cut(s)	205, 375
HphI	GGTGA	2 cut(s)	362, 389
Hpy188I	TCNGA	5 cut(s)	23, 61, 145, 305, 357
Hpy188III	TCNNGA	3 cut(s)	132, 310, 326
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	290
HpyCH4V	TGCA	1 cut(s)	229
HpyF3I	CTNAG	2 cut(s)	20, 327
HpySE526I	ACGT	1 cut(s)	290
Hsp92II	CATG	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	140, 352, 357
LmnI	GCTCC	3 cut(s)	9, 80, 383
LpnPI	CCDG	4 cut(s)	79, 117, 218, 339
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	1 cut(s)	290
MalI	GATC	3 cut(s)	142, 354, 359
MboI	GATC	3 cut(s)	140, 352, 357
MboII	GAAGA	3 cut(s)	161, 325, 356
MluCI	AATT	1 cut(s)	284
MlyI	GAGTC	1 cut(s)	300
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	1 cut(s)	128
MseI	TTAA	3 cut(s)	123, 210, 388
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	2 cut(s)	205, 375
MspR9I	CCNGG	1 cut(s)	206
Mva1269I	GAATGC	1 cut(s)	245
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	3 cut(s)	140, 352, 357
NlaIII	CATG	1 cut(s)	241
PaeR7I	CTCGAG	1 cut(s)	308
PctI	GAATGC	1 cut(s)	245
PkrI	GCNGC	1 cut(s)	333
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
PsrI	GAACNNNNNNTAC	2 cut(s)	244, 276
SaqAI	TTAA	3 cut(s)	123, 210, 388
SatI	GCNGC	1 cut(s)	332
Sau3AI	GATC	3 cut(s)	140, 352, 357
SchI	GAGTC	1 cut(s)	300
ScrFI	CCNGG	1 cut(s)	206
SetI	ASST	6 cut(s)	77, 121, 139, 293, 336, 388
SfaNI	GCATC	1 cut(s)	352
Sfr274I	CTCGAG	1 cut(s)	308
SlaI	CTCGAG	1 cut(s)	308
SmlI	CTYRAG	2 cut(s)	122, 308
SmoI	CTYRAG	2 cut(s)	122, 308
Sse9I	AATT	1 cut(s)	284
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	1 cut(s)	293
TaqI	TCGA	3 cut(s)	139, 309, 360
TasI	AATT	1 cut(s)	284
Tru1I	TTAA	3 cut(s)	123, 210, 388
Tru9I	TTAA	3 cut(s)	123, 210, 388
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	1 cut(s)	331
TspDTI	ATGAA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	160
Vha464I	CTTAAG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	284
XhoI	CTCGAG	1 cut(s)	308
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.