Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0021182

Physical Location & Seq

Genomic Coordinates Reverse (-)

747614 .. 749482

Gene Structure 1869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g00840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGTGGGTTTTTGCTCTCTGGTTTCATCAGGAGTAATCCCAGAGGGGTACTTGTACCTTTCAACCAATCAAAACTCAGCCTCTGCACTACTACAGTACTATTGCTGGTATTACTCTCTTTACCAGTTTCAGTTTGCGCGTGATCGATCAAAGACACAGAGAGCTCTCAAACAACAAAAACAACGAGAAACGCAAGAACAAAAGCTGGAAAAGAAAAAGAAAAAAAATCCAAGTTTGATTAAGATGTCCAAAGCTTCTGATCAAGAAAACAGAATCAATATCAAGTGCCAGTACAACGAGGATGGTCAAAGAACTTTCTTTAGGATGCGGCGTAATGCAAAGCTGCAAAAACTCATCGATGTATTTTGCACCAAGCGTGACATCGATCCCAAAGCAGTAGATTTCATCTTTGATGGCCAGAGAGTGAACAAAAAGAAAACTCTTGAGCAGCATGGAATCGAAGATAACGATGAGATTGAAGTCTTTTTGCGCGTCGGTGGAGGTGCAGCGATGTTGGAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0031386 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03013 ko05418 map03013 map05418

Pfam Domains

Protein Families

Rad60-SLD

Protein Analysis

175

Amino Acids

20.36

Weight (kDa)

9.46

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	92 - 164	5.2e-08	Ubiquitin family
Rad60-SLD	PF11976	100 - 162	9e-18	Ubiquitin-2 like Rad60 SUMO-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021182)

Species	Orthologous Gene IDs
malus_domestica	MD04G1010300.v1.1
prunus_persica	Prupe.1G009800_v2.0.a1 Prupe.4G277000_v2.0.a1 Prupe.4G277000_v2.0.a1
pyrus_communis	pycom04g00840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	139, 492
AciI	CCGC	1 cut(s)	328
AclWI	GGATC	1 cut(s)	380
AcoI	YGGCCR	1 cut(s)	415
AfaI	GTAC	4 cut(s)	50, 56, 98, 293
AgsI	TTSAA	2 cut(s)	63, 479
AluBI	AGCT	4 cut(s)	164, 205, 254, 343
AluI	AGCT	4 cut(s)	164, 205, 254, 343
Alw21I	GWGCWC	1 cut(s)	166
AlwI	GGATC	1 cut(s)	380
AlwNI	CAGNNNCTG	1 cut(s)	83
AoxI	GGCC	1 cut(s)	415
ApeKI	GCWGC	3 cut(s)	343, 448, 506
AspLEI	GCGC	2 cut(s)	139, 492
BalI	TGGCCA	1 cut(s)	417
BanII	GRGCYC	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	3 cut(s)	330, 460, 518
BccI	CCATC	2 cut(s)	296, 407
BclI	TGATCA	1 cut(s)	259
BfmI	CTRYAG	1 cut(s)	92
BisI	GCNGC	4 cut(s)	329, 344, 449, 507
BlsI	GCNGC	4 cut(s)	330, 345, 450, 508
BmcAI	AGTACT	1 cut(s)	98
BmsI	GCATC	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	464
Bsa29I	ATCGAT	3 cut(s)	145, 357, 384
Bse1I	ACTGG	2 cut(s)	124, 289
BseCI	ATCGAT	3 cut(s)	145, 357, 384
BseGI	GGATG	2 cut(s)	307, 330
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	2 cut(s)	124, 289
BseXI	GCAGC	3 cut(s)	330, 460, 518
BsgI	GTGCAG	2 cut(s)	69, 525
Bsh1236I	CGCG	2 cut(s)	139, 492
BshFI	GGCC	1 cut(s)	417
BshVI	ATCGAT	3 cut(s)	145, 357, 384
BsiHKAI	GWGCWC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	417
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	4 cut(s)	142, 146, 259, 385
BspACI	CCGC	1 cut(s)	328
BspANI	GGCC	1 cut(s)	417
BspCNI	CTCAG	1 cut(s)	89
BspDI	ATCGAT	3 cut(s)	145, 357, 384
BspFNI	CGCG	2 cut(s)	139, 492
BspPI	GGATC	1 cut(s)	380
BsrI	ACTGG	2 cut(s)	124, 289
BssMI	GATC	4 cut(s)	142, 146, 259, 385
Bst4CI	ACNGT	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	307, 330
BstFNI	CGCG	2 cut(s)	139, 492
BstHHI	GCGC	2 cut(s)	139, 492
BstKTI	GATC	4 cut(s)	145, 149, 262, 388
BstMBI	GATC	4 cut(s)	142, 146, 259, 385
BstSFI	CTRYAG	1 cut(s)	92
BstUI	CGCG	2 cut(s)	139, 492
BstV1I	GCAGC	3 cut(s)	330, 460, 518
Bsu15I	ATCGAT	3 cut(s)	145, 357, 384
BsuRI	GGCC	1 cut(s)	417
BsuTUI	ATCGAT	3 cut(s)	145, 357, 384
BtsCI	GGATG	2 cut(s)	307, 330
CaiI	CAGNNNCTG	1 cut(s)	83
CfoI	GCGC	2 cut(s)	139, 492
ClaI	ATCGAT	3 cut(s)	145, 357, 384
CseI	GACGC	1 cut(s)	481
Csp6I	GTAC	4 cut(s)	49, 55, 97, 292
CviAII	CATG	1 cut(s)	452
CviJI	RGCY	6 cut(s)	80, 164, 205, 254, 343, 417
CviKI_1	RGCY	6 cut(s)	80, 164, 205, 254, 343, 417
CviQI	GTAC	4 cut(s)	49, 55, 97, 292
DdeI	CTNAG	1 cut(s)	76
DpnI	GATC	4 cut(s)	144, 148, 261, 387
DpnII	GATC	4 cut(s)	142, 146, 259, 385
EaeI	YGGCCR	1 cut(s)	415
Ecl136II	GAGCTC	1 cut(s)	164
Eco24I	GRGCYC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	164
EcoT38I	GRGCYC	1 cut(s)	166
FaeI	CATG	1 cut(s)	455
FaiI	YATR	1 cut(s)	453
FatI	CATG	1 cut(s)	451
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	4 cut(s)	329, 344, 449, 507
FokI	GGATG	2 cut(s)	314, 337
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	4 cut(s)	329, 344, 449, 507
GlaI	GCGC	2 cut(s)	138, 491
GluI	GCNGC	4 cut(s)	329, 344, 449, 507
HaeIII	GGCC	1 cut(s)	417
HgaI	GACGC	1 cut(s)	481
HhaI	GCGC	2 cut(s)	139, 492
Hin1II	CATG	1 cut(s)	455
Hin6I	GCGC	2 cut(s)	137, 490
HinP1I	GCGC	2 cut(s)	137, 490
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	2 cut(s)	273, 456
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	3 cut(s)	30, 263, 443
Hpy8I	GTNNAC	1 cut(s)	427
Hpy99I	CGWCG	1 cut(s)	497
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4V	TGCA	5 cut(s)	86, 338, 346, 369, 506
HpyF3I	CTNAG	1 cut(s)	76
Hsp92II	CATG	1 cut(s)	455
HspAI	GCGC	2 cut(s)	137, 490
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	4 cut(s)	142, 146, 259, 385
LpnPI	CCDG	8 cut(s)	5, 15, 54, 91, 137, 191, 302, 431
Lsp1109I	GCAGC	3 cut(s)	330, 460, 518
LweI	GCATC	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	4 cut(s)	144, 148, 261, 387
MboI	GATC	4 cut(s)	142, 146, 259, 385
MboII	GAAGA	1 cut(s)	473
MhlI	GDGCHC	1 cut(s)	166
MlsI	TGGCCA	1 cut(s)	417
MluNI	TGGCCA	1 cut(s)	417
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	4 cut(s)	37, 91, 292, 494
Mox20I	TGGCCA	1 cut(s)	417
MscI	TGGCCA	1 cut(s)	417
MseI	TTAA	1 cut(s)	240
Msp20I	TGGCCA	1 cut(s)	417
MvnI	CGCG	2 cut(s)	139, 492
NdeII	GATC	4 cut(s)	142, 146, 259, 385
NlaIII	CATG	1 cut(s)	455
NmuCI	GTSAC	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PfeI	GAWTC	2 cut(s)	273, 456
PkrI	GCNGC	4 cut(s)	330, 345, 450, 508
Psp124BI	GAGCTC	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	83
RsaI	GTAC	4 cut(s)	50, 56, 98, 293
RsaNI	GTAC	4 cut(s)	49, 55, 97, 292
SacI	GAGCTC	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	4 cut(s)	329, 344, 449, 507
Sau3AI	GATC	4 cut(s)	142, 146, 259, 385
ScaI	AGTACT	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	6 cut(s)	60, 166, 207, 256, 345, 505
SfaNI	GCATC	1 cut(s)	315
SfcI	CTRYAG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SsiI	CCGC	1 cut(s)	328
SstI	GAGCTC	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	96
TaqI	TCGA	4 cut(s)	145, 357, 384, 459
TatI	WGTACW	2 cut(s)	96, 291
TauI	GCSGC	1 cut(s)	331
TfiI	GAWTC	2 cut(s)	273, 456
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	3 cut(s)	343, 448, 506
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	2 cut(s)	15, 394
ZrmI	AGTACT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.