Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0021182

Physical Location & Seq

Genomic Coordinates Reverse (-)

768529 .. 769849

Gene Structure 1321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G009800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTCTAGAGGTCGATCTGATGAAGACACTGTGAAGCTCAAGGTTCAGTACAACAAGGATGGAGTTCAAACTTTTTTCCGGGTTAAACGAAGCATCAAACTGCAAAAACTCATGGAAGCCTTCTGCAAAAAGCGTTCCCTTGACCCCAAATCAATGCAATTCACGTTTGATGGCGTCGGACTCGAGAAGAACAAAACTCCGGAGGAGTTGCTGCTTAACTTTGTGCAGCTTGGAATGGAAGATGGTGATGAGATCGATGCCCTTGAGCTCGTTGATGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0031386 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03013 ko05418 map03013 map05418

Pfam Domains

Protein Families

Rad60-SLD

Protein Analysis

95

Amino Acids

10.75

Weight (kDa)

5.47

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021182)

Species	Orthologous Gene IDs
malus_domestica	MD04G1010300.v1.1
prunus_persica	Prupe.1G009800_v2.0.a1 Prupe.4G277000_v2.0.a1 Prupe.4G277000_v2.0.a1
pyrus_communis	pycom04g00840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	199
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	1 cut(s)	50
AgsI	TTSAA	1 cut(s)	68
AluBI	AGCT	4 cut(s)	37, 229, 268, 281
AluI	AGCT	4 cut(s)	37, 229, 268, 281
Alw21I	GWGCWC	1 cut(s)	270
Ama87I	CYCGRG	1 cut(s)	182
Aor13HI	TCCGGA	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	211, 226
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	198, 238
BccI	CCATC	4 cut(s)	53, 164, 236, 269
BcnI	CCSGG	1 cut(s)	80
BfaI	CTAG	1 cut(s)	6
BisI	GCNGC	2 cut(s)	212, 227
BlsI	GCNGC	2 cut(s)	213, 228
Bme1390I	CCNGG	1 cut(s)	80
BmeT110I	CYCGRG	1 cut(s)	182
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	2 cut(s)	102, 247
BpiI	GAAGAC	1 cut(s)	30
BpuEI	CTTGAG	2 cut(s)	23, 284
BpuMI	CCSGG	1 cut(s)	80
Bsa29I	ATCGAT	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	199
BseAI	TCCGGA	1 cut(s)	199
BseCI	ATCGAT	1 cut(s)	255
BseGI	GGATG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	2 cut(s)	198, 238
BsgI	GTGCAG	1 cut(s)	245
BshVI	ATCGAT	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	270
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	2 cut(s)	79, 200
BsoBI	CYCGRG	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	14, 252
BspDI	ATCGAT	1 cut(s)	255
BspEI	TCCGGA	1 cut(s)	199
BssMI	GATC	2 cut(s)	14, 252
BssNI	GRCGYC	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	31
BstACI	GRCGYC	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	64
BstKTI	GATC	2 cut(s)	17, 255
BstMBI	GATC	2 cut(s)	14, 252
BstSCI	CCNGG	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	198, 238
BstV2I	GAAGAC	1 cut(s)	30
Bsu15I	ATCGAT	1 cut(s)	255
BsuTUI	ATCGAT	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	27
ClaI	ATCGAT	1 cut(s)	255
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	5 cut(s)	37, 119, 229, 268, 281
CviKI_1	RGCY	5 cut(s)	37, 119, 229, 268, 281
CviQI	GTAC	1 cut(s)	49
DpnI	GATC	2 cut(s)	16, 254
DpnII	GATC	2 cut(s)	14, 252
Ecl136II	GAGCTC	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	270
Eco53kI	GAGCTC	1 cut(s)	268
Eco88I	CYCGRG	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	270
FaeI	CATG	1 cut(s)	115
FaiI	YATR	1 cut(s)	113
FatI	CATG	1 cut(s)	111
Fnu4HI	GCNGC	2 cut(s)	212, 227
FokI	GGATG	1 cut(s)	71
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	2 cut(s)	212, 227
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	2 cut(s)	212, 227
HapII	CCGG	2 cut(s)	79, 200
HgaI	GACGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	1 cut(s)	115
HinfI	GANTC	1 cut(s)	180
HpaII	CCGG	2 cut(s)	79, 200
HphI	GGTGA	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	19, 179
Hpy188III	TCNNGA	3 cut(s)	6, 184, 200
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	4 cut(s)	103, 126, 157, 226
HpySE526I	ACGT	1 cut(s)	164
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	115
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	14, 252
LmnI	GCTCC	1 cut(s)	278
LpnPI	CCDG	2 cut(s)	92, 213
Lsp1109I	GCAGC	2 cut(s)	198, 238
LweI	GCATC	2 cut(s)	102, 247
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	164
MalI	GATC	2 cut(s)	16, 254
MboI	GATC	2 cut(s)	14, 252
MboII	GAAGA	3 cut(s)	35, 199, 251
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	1 cut(s)	196
MroI	TCCGGA	1 cut(s)	199
MseI	TTAA	2 cut(s)	84, 216
MspI	CCGG	2 cut(s)	79, 200
MspR9I	CCNGG	1 cut(s)	80
NciI	CCSGG	1 cut(s)	80
NdeII	GATC	2 cut(s)	14, 252
NlaIII	CATG	1 cut(s)	115
PaeR7I	CTCGAG	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	213, 228
PleI	GAGTC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	174
Psp124BI	GAGCTC	1 cut(s)	270
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	84, 216
SatI	GCNGC	2 cut(s)	212, 227
Sau3AI	GATC	2 cut(s)	14, 252
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	7 cut(s)	13, 39, 45, 167, 231, 270, 283
SfaNI	GCATC	2 cut(s)	102, 247
Sfr274I	CTCGAG	1 cut(s)	182
SlaI	CTCGAG	1 cut(s)	182
SmlI	CTYRAG	3 cut(s)	38, 182, 263
SmoI	CTYRAG	3 cut(s)	38, 182, 263
Sse9I	AATT	1 cut(s)	158
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	3 cut(s)	13, 183, 255
TasI	AATT	1 cut(s)	158
TatI	WGTACW	1 cut(s)	48
Tru1I	TTAA	2 cut(s)	84, 216
Tru9I	TTAA	2 cut(s)	84, 216
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	2 cut(s)	211, 226
TspDTI	ATGAA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	34
XbaI	TCTAGA	1 cut(s)	5
XhoI	CTCGAG	1 cut(s)	182
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.