MD04G1023900.v1.1

Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0018504
Physical Location & Seq
Forward (+)
2753009 .. 2755616
2608 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1023900.v1.1.491

Sequence Viewer

Length: 237 bp
ATGCAGCAACAGAAATTGATTTGGGGATGGGTTTTCATCGCCTCTGGCTCCCTTTTCTTTCTGGGTTTTCTCTACGCCGCCGTGATATCCAAGCTTCTTCCGCCTTCAGATAATCCTATCGTCTCCGCGATCCAAAGCGACCGGTATTATTGCTTCTTGGTGCCCTTGACTCTGCCGGTCCTTGTGGTAGCTGTATATTTTCACTGGCTCAGCATGAAACTGTTCAAGCATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-Y

Protein Analysis

79

Amino Acids

8.94

Weight (kDa)

9.3

Isoelectric Point (pI)

29.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-Y PF15159 9 - 77 1.7e-22 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018504)

Species Orthologous Gene IDs
malus_domestica MD04G1023900.v1.1
prunus_persica Prupe.1G174200_v2.0.a1 Prupe.1G174200_v2.0.a1 Prupe.1G174200_v2.0.a1
pyrus_communis pycom04g02060
rosa_chinensis RchiOBHm_Chr4g0411561
rosa_multiflora Rmu_sc0001868.1_g000003 Rmu_sc0006550.1_g000002
rosa_samantha Rh4BG165800
rosa_wichuraiana Rw4G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 160
AccII CGCG 1 cut(s) 128
AciI CCGC 3 cut(s) 78, 101, 126
AclWI GGATC 1 cut(s) 124
AcuI CTGAAG 1 cut(s) 90
AgeI ACCGGT 1 cut(s) 141
AgsI TTSAA 1 cut(s) 226
AluBI AGCT 2 cut(s) 94, 191
AluI AGCT 2 cut(s) 94, 191
Alw26I GTCTC 1 cut(s) 127
AlwI GGATC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 4
AsiGI ACCGGT 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 178
AvaII GGWCC 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 165
BanI GGYRCC 1 cut(s) 160
BarI GAAGNNNNNNTAC 2 cut(s) 137, 169
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 21
BceAI ACGGC 1 cut(s) 65
BcoDI GTCTC 1 cut(s) 127
BisI GCNGC 2 cut(s) 5, 78
BlpI GCTNAGC 1 cut(s) 209
BlsI GCNGC 2 cut(s) 6, 79
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 2 cut(s) 49, 162
Bpu1102I GCTNAGC 1 cut(s) 209
BsaWI WCCGGW 1 cut(s) 141
Bse118I RCCGGY 2 cut(s) 141, 175
Bse1I ACTGG 1 cut(s) 209
BseGI GGATG 1 cut(s) 32
BseMII CTCAG 1 cut(s) 223
BseNI ACTGG 1 cut(s) 209
BseSI GKGCMC 1 cut(s) 165
BseXI GCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 128
Bsh1285I CGRYCG 1 cut(s) 142
BshNI GGYRCC 1 cut(s) 160
BshTI ACCGGT 1 cut(s) 141
BsiEI CGRYCG 1 cut(s) 142
BsiSI CCGG 2 cut(s) 142, 176
BsmAI GTCTC 1 cut(s) 127
BsmBI CGTCTC 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 1 cut(s) 129
Bsp1720I GCTNAGC 1 cut(s) 209
BspACI CCGC 3 cut(s) 78, 101, 126
BspCNI CTCAG 1 cut(s) 222
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 2 cut(s) 49, 162
BspPI GGATC 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 160
BsrFI RCCGGY 2 cut(s) 141, 175
BsrI ACTGG 1 cut(s) 209
BssAI RCCGGY 2 cut(s) 141, 175
BssMI GATC 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 32
BstFNI CGCG 1 cut(s) 128
BstKTI GATC 1 cut(s) 132
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 1 cut(s) 129
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNSI RCATGY 1 cut(s) 233
BstSLI GKGCMC 1 cut(s) 165
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 16
BtgZI GCGATG 1 cut(s) 22
BtsCI GGATG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 231
Cfr10I RCCGGY 2 cut(s) 141, 175
Cfr13I GGNCC 1 cut(s) 178
CspAI ACCGGT 1 cut(s) 141
CviAII CATG 3 cut(s) 214, 230, 234
CviJI RGCY 4 cut(s) 48, 94, 191, 208
CviKI_1 RGCY 4 cut(s) 48, 94, 191, 208
DdeI CTNAG 1 cut(s) 209
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
EciI GGCGGA 1 cut(s) 90
Eco32I GATATC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 90
EcoRV GATATC 1 cut(s) 87
EcoT22I ATGCAT 1 cut(s) 235
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 3 cut(s) 217, 233, 237
FaiI YATR 4 cut(s) 196, 215, 231, 235
FatI CATG 3 cut(s) 213, 229, 233
Fnu4HI GCNGC 2 cut(s) 5, 78
FokI GGATG 1 cut(s) 39
Fsp4HI GCNGC 2 cut(s) 5, 78
GluI GCNGC 2 cut(s) 5, 78
HapII CCGG 2 cut(s) 142, 176
Hin1II CATG 3 cut(s) 217, 233, 237
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 1 cut(s) 169
HpaII CCGG 2 cut(s) 142, 176
Hpy188I TCNGA 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 114
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4V TGCA 2 cut(s) 4, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 1 cut(s) 209
Hsp92II CATG 3 cut(s) 217, 233, 237
Kzo9I GATC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 5 cut(s) 30, 47, 155, 189, 190
Lsp1109I GCAGC 1 cut(s) 16
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MboII GAAGA 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 1 cut(s) 14
MlyI GAGTC 1 cut(s) 163
MnlI CCTC 1 cut(s) 52
Mph1103I ATGCAT 1 cut(s) 235
MroXI GAANNNNTTC 1 cut(s) 221
MspI CCGG 2 cut(s) 142, 176
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 1 cut(s) 129
NlaIII CATG 3 cut(s) 217, 233, 237
NlaIV GGNNCC 2 cut(s) 49, 162
NsiI ATGCAT 1 cut(s) 235
NspI RCATGY 1 cut(s) 233
PaeI GCATGC 1 cut(s) 233
PdmI GAANNNNTTC 1 cut(s) 221
PinAI ACCGGT 1 cut(s) 141
PkrI GCNGC 2 cut(s) 6, 79
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PspN4I GGNNCC 2 cut(s) 49, 162
PspPI GGNCC 1 cut(s) 178
SatI GCNGC 2 cut(s) 5, 78
Sau3AI GATC 1 cut(s) 129
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 1 cut(s) 163
SduI GDGCHC 1 cut(s) 165
SetI ASST 2 cut(s) 96, 193
SinI GGWCC 1 cut(s) 178
SphI GCATGC 1 cut(s) 233
Sse9I AATT 1 cut(s) 14
SsiI CCGC 3 cut(s) 78, 101, 126
TaaI ACNGT 1 cut(s) 222
TasI AATT 1 cut(s) 14
TauI GCSGC 1 cut(s) 80
TscAI CASTG 1 cut(s) 209
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 2 cut(s) 25, 230
TspRI CASTG 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 178
XceI RCATGY 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 221
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.