Prupe.1G174200_v2.0.a1

Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018504
Physical Location & Seq
Forward (+)
14655353 .. 14658385
3033 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G174200.3

Sequence Viewer

Length: 471 bp
ATGGGTGAACTGATCAAATATACTGTGCGTAGAAGCGAAGTATACAAATACAAAGACCCAAAGGTTCGCATCTTCTTCTTCTTCGCGCTTCTCCACTGGGCTTTCTCCTCCACAGCTTCTCCTCCTTCTCCTTGGCGCTTCTACTCATACGAGCACCAGACCCAAAAAAATCGAGTTTTGGGTTTTCTTTTTTGGGCTGCAGATGTAAGTGTAGAGTGGCCGGAAGATAAAAGTAAAATGCAACAGAATTTGATTTGGGGATGGTTTTTCATCGCATCCGGCTCTGTTTTCTTTCTGGGTTTTCTCTATGCTACCGTCTTATCCAAGCTTCTTCCACCTTCAGATAATATTATCCTCTCCGCCATACAAAATGACCGGTATTATTGCTTTTTGGTGCCCTTGACTCTCCCGGTCCTTGTGGTTGCTGTATACTTTCATTGGCTTAGCATGAAACTGTTCAAACATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-Y

Protein Analysis

157

Amino Acids

18.44

Weight (kDa)

9.46

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018504)

Species Orthologous Gene IDs
malus_domestica MD04G1023900.v1.1
prunus_persica Prupe.1G174200_v2.0.a1 Prupe.1G174200_v2.0.a1 Prupe.1G174200_v2.0.a1
pyrus_communis pycom04g02060
rosa_chinensis RchiOBHm_Chr4g0411561
rosa_multiflora Rmu_sc0001868.1_g000003 Rmu_sc0006550.1_g000002
rosa_samantha Rh4BG165800
rosa_wichuraiana Rw4G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 394
AccI GTMKAC 2 cut(s) 42, 429
AccII CGCG 1 cut(s) 86
AciI CCGC 1 cut(s) 360
AcoI YGGCCR 1 cut(s) 218
AcsI RAATTY 1 cut(s) 247
AcuI CTGAAG 1 cut(s) 324
AgeI ACCGGT 1 cut(s) 375
AgsI TTSAA 1 cut(s) 460
AluBI AGCT 2 cut(s) 116, 328
AluI AGCT 2 cut(s) 116, 328
Alw21I GWGCWC 1 cut(s) 156
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 1 cut(s) 247
AsiGI ACCGGT 1 cut(s) 375
Asp700I GAANNNNTTC 1 cut(s) 455
AspLEI GCGC 2 cut(s) 88, 138
AspS9I GGNCC 1 cut(s) 412
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 1 cut(s) 17
AvaII GGWCC 1 cut(s) 412
BaeGI GKGCMC 1 cut(s) 399
BanI GGYRCC 1 cut(s) 394
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 184
BccI CCATC 1 cut(s) 255
BclI TGATCA 1 cut(s) 12
BcnI CCSGG 1 cut(s) 410
BfmI CTRYAG 1 cut(s) 198
BfoI RGCGCY 1 cut(s) 139
BisI GCNGC 1 cut(s) 198
BlpI GCTNAGC 1 cut(s) 443
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 1 cut(s) 410
Bme18I GGWCC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 412
BmiI GGNNCC 1 cut(s) 396
BmrFI CCNGG 1 cut(s) 410
BmrI ACTGGG 1 cut(s) 106
BmsI GCATC 2 cut(s) 78, 284
BmuI ACTGGG 1 cut(s) 106
Bpu1102I GCTNAGC 1 cut(s) 443
BpuMI CCSGG 1 cut(s) 410
BsaJI CCNNGG 1 cut(s) 131
BsaWI WCCGGW 1 cut(s) 375
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bse118I RCCGGY 1 cut(s) 375
Bse1I ACTGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 2 cut(s) 266, 275
BseNI ACTGG 1 cut(s) 101
BseRI GAGGAG 2 cut(s) 97, 111
BseSI GKGCMC 1 cut(s) 399
BseXI GCAGC 1 cut(s) 184
Bsh1236I CGCG 1 cut(s) 86
BshFI GGCC 1 cut(s) 220
BshNI GGYRCC 1 cut(s) 394
BshTI ACCGGT 1 cut(s) 375
BsiHKAI GWGCWC 1 cut(s) 156
BsiSI CCGG 4 cut(s) 221, 279, 376, 410
BsnI GGCC 1 cut(s) 220
Bsp1286I GDGCHC 2 cut(s) 156, 399
Bsp143I GATC 1 cut(s) 12
Bsp1720I GCTNAGC 1 cut(s) 443
BspACI CCGC 1 cut(s) 360
BspANI GGCC 1 cut(s) 220
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 396
BspMAI CTGCAG 1 cut(s) 202
BspT107I GGYRCC 1 cut(s) 394
BsrFI RCCGGY 1 cut(s) 375
BsrI ACTGG 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 375
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 1 cut(s) 12
BssNAI GTATAC 2 cut(s) 43, 430
BssT1I CCWWGG 1 cut(s) 131
Bst1107I GTATAC 2 cut(s) 43, 430
Bst4CI ACNGT 3 cut(s) 25, 316, 456
BstDEI CTNAG 1 cut(s) 443
BstF5I GGATG 2 cut(s) 266, 275
BstFNI CGCG 1 cut(s) 86
BstH2I RGCGCY 1 cut(s) 139
BstHHI GCGC 2 cut(s) 88, 138
BstKTI GATC 1 cut(s) 15
BstMBI GATC 1 cut(s) 12
BstNSI RCATGY 1 cut(s) 467
BstSCI CCNGG 1 cut(s) 408
BstSFI CTRYAG 1 cut(s) 198
BstSLI GKGCMC 1 cut(s) 399
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 184
BstZ17I GTATAC 2 cut(s) 43, 430
BsuRI GGCC 1 cut(s) 220
BtgZI GCGATG 1 cut(s) 256
BtsCI GGATG 2 cut(s) 266, 275
BtsIMutI CAGTG 1 cut(s) 94
CfoI GCGC 2 cut(s) 88, 138
Cfr10I RCCGGY 1 cut(s) 375
Cfr13I GGNCC 1 cut(s) 412
CspAI ACCGGT 1 cut(s) 375
CviAII CATG 3 cut(s) 448, 464, 468
CviJI RGCY 7 cut(s) 101, 116, 197, 220, 282, 328, 442
CviKI_1 RGCY 7 cut(s) 101, 116, 197, 220, 282, 328, 442
DdeI CTNAG 1 cut(s) 443
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
EaeI YGGCCR 1 cut(s) 218
EciI GGCGGA 1 cut(s) 349
Eco130I CCWWGG 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 412
Eco57I CTGAAG 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 131
EcoT22I ATGCAT 1 cut(s) 469
ErhI CCWWGG 1 cut(s) 131
FaeI CATG 3 cut(s) 451, 467, 471
FaiI YATR 9 cut(s) 21, 43, 148, 309, 365, 430, 449, 465, 469
FatI CATG 3 cut(s) 447, 463, 467
FbaI TGATCA 1 cut(s) 12
FblI GTMKAC 2 cut(s) 42, 429
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 2 cut(s) 262, 273
Fsp4HI GCNGC 1 cut(s) 198
GlaI GCGC 2 cut(s) 87, 137
GluI GCNGC 1 cut(s) 198
HaeII RGCGCY 1 cut(s) 139
HaeIII GGCC 1 cut(s) 220
HapII CCGG 4 cut(s) 221, 279, 376, 410
HhaI GCGC 2 cut(s) 88, 138
Hin1II CATG 3 cut(s) 451, 467, 471
Hin6I GCGC 2 cut(s) 86, 136
HinP1I GCGC 2 cut(s) 86, 136
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 1 cut(s) 403
HpaII CCGG 4 cut(s) 221, 279, 376, 410
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 3 cut(s) 8, 43, 430
Hpy188I TCNGA 1 cut(s) 343
Hpy8I GTNNAC 3 cut(s) 8, 43, 430
HpyAV CCTTC 2 cut(s) 135, 348
HpyCH4III ACNGT 3 cut(s) 25, 316, 456
HpyCH4V TGCA 3 cut(s) 200, 241, 467
HpyF3I CTNAG 1 cut(s) 443
Hsp92II CATG 3 cut(s) 451, 467, 471
HspAI GCGC 2 cut(s) 86, 136
Ksp22I TGATCA 1 cut(s) 12
Kzo9I GATC 1 cut(s) 12
LpnPI CCDG 7 cut(s) 82, 170, 234, 281, 292, 389, 423
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 2 cut(s) 78, 284
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MboII GAAGA 6 cut(s) 64, 67, 70, 73, 236, 323
MhlI GDGCHC 2 cut(s) 156, 399
MluCI AATT 1 cut(s) 247
MlyI GAGTC 1 cut(s) 397
MnlI CCTC 3 cut(s) 118, 132, 365
Mph1103I ATGCAT 1 cut(s) 469
MroXI GAANNNNTTC 1 cut(s) 455
MspI CCGG 4 cut(s) 221, 279, 376, 410
MspR9I CCNGG 1 cut(s) 410
MvnI CGCG 1 cut(s) 86
NciI CCSGG 1 cut(s) 410
NdeII GATC 1 cut(s) 12
NlaIII CATG 3 cut(s) 451, 467, 471
NlaIV GGNNCC 1 cut(s) 396
NsiI ATGCAT 1 cut(s) 469
NspI RCATGY 1 cut(s) 467
PdmI GAANNNNTTC 1 cut(s) 455
PinAI ACCGGT 1 cut(s) 375
PkrI GCNGC 1 cut(s) 199
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
PspN4I GGNNCC 1 cut(s) 396
PspPI GGNCC 1 cut(s) 412
PstI CTGCAG 1 cut(s) 202
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 1 cut(s) 12
Sau96I GGNCC 1 cut(s) 412
SchI GAGTC 1 cut(s) 397
ScrFI CCNGG 1 cut(s) 410
SduI GDGCHC 2 cut(s) 156, 399
SetI ASST 4 cut(s) 66, 118, 330, 340
SfaNI GCATC 2 cut(s) 78, 284
SfcI CTRYAG 1 cut(s) 198
SinI GGWCC 1 cut(s) 412
Sse9I AATT 1 cut(s) 247
SsiI CCGC 1 cut(s) 360
SspI AATATT 1 cut(s) 349
StyD4I CCNGG 1 cut(s) 408
StyI CCWWGG 1 cut(s) 131
TaaI ACNGT 3 cut(s) 25, 316, 456
TaqI TCGA 1 cut(s) 172
TasI AATT 1 cut(s) 247
TscAI CASTG 1 cut(s) 101
TseI GCWGC 1 cut(s) 197
TspDTI ATGAA 3 cut(s) 259, 425, 464
TspRI CASTG 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 412
XapI RAATTY 1 cut(s) 247
XceI RCATGY 1 cut(s) 467
XmiI GTMKAC 2 cut(s) 42, 429
XmnI GAANNNNTTC 1 cut(s) 455
Zsp2I ATGCAT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.