Rh4BG165800

Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0018504
Physical Location & Seq
Reverse (-)
29888737 .. 29889677
941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG165800.1

Sequence Viewer

Length: 255 bp
ATGCAGCAGAGTTGGTTCTGGGGATGGTTTTTCATCGGATCGGGGTCTCTCTTCTTTGTGGGGTTTCTCTACGCTACCATCTTCTCCAAGCTTCTTCCCCCATCCGATAATACCATCATCTCTGCCATCCAAAACGACCGGTATTATTGCTTCTTGCATGAAGATGTTCAAACATGCCTGATCCTCAGGAAGGAAATAGCTCCATTTAAGATCATGAGTTCTTATTGTCAAATGCTGCAAACACAAAAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-Y

Protein Analysis

84

Amino Acids

9.92

Weight (kDa)

7.7

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-Y PF15159 8 - 52 1e-06 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018504)

Species Orthologous Gene IDs
malus_domestica MD04G1023900.v1.1
prunus_persica Prupe.1G174200_v2.0.a1 Prupe.1G174200_v2.0.a1 Prupe.1G174200_v2.0.a1
pyrus_communis pycom04g02060
rosa_chinensis RchiOBHm_Chr4g0411561
rosa_multiflora Rmu_sc0001868.1_g000003 Rmu_sc0006550.1_g000002
rosa_samantha Rh4BG165800
rosa_wichuraiana Rw4G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 46, 175
AfiI CCNNNNNNNGG 1 cut(s) 190
AgeI ACCGGT 1 cut(s) 138
AgsI TTSAA 1 cut(s) 170
AluBI AGCT 2 cut(s) 91, 200
AluI AGCT 2 cut(s) 91, 200
Alw26I GTCTC 1 cut(s) 51
AlwI GGATC 2 cut(s) 46, 175
ApeKI GCWGC 2 cut(s) 4, 235
AsiGI ACCGGT 1 cut(s) 138
Asp700I GAANNNNTTC 1 cut(s) 165
AxyI CCTNAGG 1 cut(s) 185
BarI GAAGNNNNNNTAC 2 cut(s) 134, 166
BbvI GCAGC 2 cut(s) 16, 222
BccI CCATC 5 cut(s) 18, 86, 109, 122, 134
BcoDI GTCTC 1 cut(s) 51
BisI GCNGC 2 cut(s) 5, 236
BlsI GCNGC 2 cut(s) 6, 237
BsaI GGTCTC 1 cut(s) 51
BsaWI WCCGGW 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse118I RCCGGY 1 cut(s) 138
Bse21I CCTNAGG 1 cut(s) 185
BseGI GGATG 3 cut(s) 29, 101, 126
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 199
BseXI GCAGC 2 cut(s) 16, 222
Bsh1285I CGRYCG 1 cut(s) 139
BshTI ACCGGT 1 cut(s) 138
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 51
Bso31I GGTCTC 1 cut(s) 51
Bsp143I GATC 3 cut(s) 38, 180, 210
BspCNI CTCAG 1 cut(s) 198
BspHI TCATGA 1 cut(s) 213
BspPI GGATC 2 cut(s) 46, 175
BspTNI GGTCTC 1 cut(s) 51
BsrFI RCCGGY 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 138
BssMI GATC 3 cut(s) 38, 180, 210
Bst6I CTCTTC 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 185
BstENI CCTNNNNNAGG 1 cut(s) 188
BstF5I GGATG 3 cut(s) 29, 101, 126
BstKTI GATC 3 cut(s) 41, 183, 213
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 3 cut(s) 38, 180, 210
BstMCI CGRYCG 1 cut(s) 139
BstNSI RCATGY 1 cut(s) 177
BstV1I GCAGC 2 cut(s) 16, 222
Bsu36I CCTNAGG 1 cut(s) 185
BtsCI GGATG 3 cut(s) 29, 101, 126
CciI TCATGA 1 cut(s) 213
Cfr10I RCCGGY 1 cut(s) 138
CspAI ACCGGT 1 cut(s) 138
CviAII CATG 3 cut(s) 158, 174, 214
CviJI RGCY 2 cut(s) 91, 200
CviKI_1 RGCY 2 cut(s) 91, 200
DdeI CTNAG 1 cut(s) 185
DpnI GATC 3 cut(s) 40, 182, 212
DpnII GATC 3 cut(s) 38, 180, 210
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco31I GGTCTC 1 cut(s) 51
Eco81I CCTNAGG 1 cut(s) 185
EcoNI CCTNNNNNAGG 1 cut(s) 188
FaeI CATG 3 cut(s) 161, 177, 217
FaiI YATR 3 cut(s) 159, 175, 215
FatI CATG 3 cut(s) 157, 173, 213
Fnu4HI GCNGC 2 cut(s) 5, 236
FokI GGATG 3 cut(s) 36, 88, 113
Fsp4HI GCNGC 2 cut(s) 5, 236
GluI GCNGC 2 cut(s) 5, 236
HapII CCGG 1 cut(s) 139
Hin1II CATG 3 cut(s) 161, 177, 217
HindIII AAGCTT 1 cut(s) 89
HpaII CCGG 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 38, 106
Hpy188III TCNNGA 2 cut(s) 187, 214
HpyAV CCTTC 1 cut(s) 184
HpyCH4V TGCA 3 cut(s) 4, 157, 238
HpyF3I CTNAG 1 cut(s) 185
Hsp92II CATG 3 cut(s) 161, 177, 217
Kzo9I GATC 3 cut(s) 38, 180, 210
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 4 cut(s) 4, 152, 172, 191
Lsp1109I GCAGC 2 cut(s) 16, 222
MalI GATC 3 cut(s) 40, 182, 212
MboI GATC 3 cut(s) 38, 180, 210
MboII GAAGA 4 cut(s) 43, 73, 86, 173
MnlI CCTC 1 cut(s) 194
MroXI GAANNNNTTC 1 cut(s) 165
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 162
MspI CCGG 1 cut(s) 139
NdeII GATC 3 cut(s) 38, 180, 210
NlaIII CATG 3 cut(s) 161, 177, 217
NspI RCATGY 1 cut(s) 177
PagI TCATGA 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 165
PinAI ACCGGT 1 cut(s) 138
PkrI GCNGC 2 cut(s) 6, 237
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 2 cut(s) 5, 236
Sau3AI GATC 3 cut(s) 38, 180, 210
SetI ASST 2 cut(s) 93, 202
SmiMI CAYNNNNRTG 1 cut(s) 162
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TseI GCWGC 2 cut(s) 4, 235
TspDTI ATGAA 2 cut(s) 22, 174
XagI CCTNNNNNAGG 1 cut(s) 188
XceI RCATGY 1 cut(s) 177
XmnI GAANNNNTTC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.