RchiOBHm_Chr4g0411561

Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0018504
Physical Location & Seq
Reverse (-)
35397380 .. 35399769
2390 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38236

Sequence Viewer

Length: 234 bp
ATGCAGCAGAGTTGGTTCTGGGGATGGTTTTTCATCGGATCGGGGTCTCTCTTCTTTGTGGGGTTCCTCTACGCCACCATCTTCTCCAAGCTTCTTCCCCCATCCGATAATACCATCATCTCTGCCATCCAAAACGACCGGTATTATTGCTTCTTGGTGCCACTGACTCTCCCGGTCCTTGTGGTTGCCGTATATTTTCATTGGCTCAGCATGAAGATGTTCAAACATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-Y

Protein Analysis

77

Amino Acids

9.03

Weight (kDa)

8.93

Isoelectric Point (pI)

34.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-Y PF15159 8 - 76 1e-21 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018504)

Species Orthologous Gene IDs
malus_domestica MD04G1023900.v1.1
prunus_persica Prupe.1G174200_v2.0.a1 Prupe.1G174200_v2.0.a1 Prupe.1G174200_v2.0.a1
pyrus_communis pycom04g02060
rosa_chinensis RchiOBHm_Chr4g0411561
rosa_multiflora Rmu_sc0001868.1_g000003 Rmu_sc0006550.1_g000002
rosa_samantha Rh4BG165800
rosa_wichuraiana Rw4G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 157
AclWI GGATC 1 cut(s) 46
AgeI ACCGGT 1 cut(s) 138
AgsI TTSAA 1 cut(s) 223
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 51
AlwI GGATC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 4
AsiGI ACCGGT 1 cut(s) 138
Asp700I GAANNNNTTC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 175
AsuC2I CCSGG 1 cut(s) 173
AvaII GGWCC 1 cut(s) 175
BanI GGYRCC 1 cut(s) 157
BarI GAAGNNNNNNTAC 2 cut(s) 134, 166
BbvI GCAGC 1 cut(s) 16
BccI CCATC 5 cut(s) 18, 86, 109, 122, 134
BceAI ACGGC 1 cut(s) 173
BcnI CCSGG 1 cut(s) 173
BcoDI GTCTC 1 cut(s) 51
BisI GCNGC 1 cut(s) 5
BlpI GCTNAGC 1 cut(s) 206
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 2 cut(s) 65, 159
BmrFI CCNGG 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 173
BsaI GGTCTC 1 cut(s) 51
BsaWI WCCGGW 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bse118I RCCGGY 1 cut(s) 138
BseGI GGATG 3 cut(s) 29, 101, 126
BseMII CTCAG 1 cut(s) 220
BseXI GCAGC 1 cut(s) 16
Bsh1285I CGRYCG 1 cut(s) 139
BshNI GGYRCC 1 cut(s) 157
BshTI ACCGGT 1 cut(s) 138
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 2 cut(s) 139, 173
BsmAI GTCTC 1 cut(s) 51
Bso31I GGTCTC 1 cut(s) 51
Bsp143I GATC 1 cut(s) 38
Bsp1720I GCTNAGC 1 cut(s) 206
BspCNI CTCAG 1 cut(s) 219
BspLI GGNNCC 2 cut(s) 65, 159
BspPI GGATC 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 157
BspTNI GGTCTC 1 cut(s) 51
BsrFI RCCGGY 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 138
BssMI GATC 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 206
BstF5I GGATG 3 cut(s) 29, 101, 126
BstKTI GATC 1 cut(s) 41
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 1 cut(s) 38
BstMCI CGRYCG 1 cut(s) 139
BstNSI RCATGY 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 16
BtsCI GGATG 3 cut(s) 29, 101, 126
BtsIMutI CAGTG 1 cut(s) 161
Cfr10I RCCGGY 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 175
CspAI ACCGGT 1 cut(s) 138
CviAII CATG 2 cut(s) 211, 227
CviJI RGCY 2 cut(s) 91, 205
CviKI_1 RGCY 2 cut(s) 91, 205
DdeI CTNAG 1 cut(s) 206
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco31I GGTCTC 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 175
FaeI CATG 2 cut(s) 214, 230
FaiI YATR 3 cut(s) 193, 212, 228
FatI CATG 2 cut(s) 210, 226
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 3 cut(s) 36, 88, 113
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
HapII CCGG 2 cut(s) 139, 173
Hin1II CATG 2 cut(s) 214, 230
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 1 cut(s) 166
HpaII CCGG 2 cut(s) 139, 173
Hpy188I TCNGA 2 cut(s) 38, 106
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 206
Hsp92II CATG 2 cut(s) 214, 230
Kzo9I GATC 1 cut(s) 38
LpnPI CCDG 3 cut(s) 4, 152, 186
Lsp1109I GCAGC 1 cut(s) 16
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MboII GAAGA 4 cut(s) 43, 73, 86, 226
MlyI GAGTC 1 cut(s) 160
MnlI CCTC 1 cut(s) 77
MroXI GAANNNNTTC 1 cut(s) 218
MslI CAYNNNNRTG 1 cut(s) 215
MspI CCGG 2 cut(s) 139, 173
MspR9I CCNGG 1 cut(s) 173
NciI CCSGG 1 cut(s) 173
NdeII GATC 1 cut(s) 38
NlaIII CATG 2 cut(s) 214, 230
NlaIV GGNNCC 2 cut(s) 65, 159
NspI RCATGY 1 cut(s) 230
PdmI GAANNNNTTC 1 cut(s) 218
PinAI ACCGGT 1 cut(s) 138
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 65, 159
PspPI GGNCC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 215
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 38
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 173
SetI ASST 1 cut(s) 93
SgeI CNNG 9 cut(s) 31, 54, 100, 151, 166, 184, 185, 191, 223
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 215
StyD4I CCNGG 1 cut(s) 171
TscAI CASTG 1 cut(s) 168
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 3 cut(s) 22, 188, 227
TspRI CASTG 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 175
XceI RCATGY 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.