MD04G1034900.v1.1

TMV resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0021181
Physical Location & Seq
Forward (+)
3903094 .. 3908015
4922 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1034900.v1.1.491

Sequence Viewer

Length: 369 bp
ATGGTTATACCCGTATTCTACGACATCAATCCATCTGATGTACGAAAGCAACACGGGAGTTATGCGGGTGCATTTGCTCAACTTGAAAAACGTTTCAAGGACAATATTGATAAGGTGCACAAGTGGAGGGATGCTTTGAAGACCGCAGCCGATTTGTCTGGGTTTGATTATTCAAACAAACGCGGGACAAGGCCACAGGGAGAATTCTGTACAAAGGGCGTTGCAGTAATGGACTCTATCCCATTCAGTCACTCTCCACTCGTTCTCATATACACCAGTCTTCTCAATCTCCATCTGTTGTTTATCTTGGTCAGCTTGTTGGTTCTAGCTTATGGCATAATAGGTCATGACATCCATCCAATCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIR

Protein Analysis

123

Amino Acids

13.7

Weight (kDa)

8.74

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 1 - 61 1.1e-11 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021181)

Species Orthologous Gene IDs
malus_domestica MD04G1034900.v1.1
pyrus_communis pycom04g02970
rosa_laevigata RLG00000033610
rosa_multiflora Rmu_sc0006084.1_g000011 Rmu_sc0006803.1_g000037

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 183
AciI CCGC 3 cut(s) 65, 144, 183
AclI AACGTT 1 cut(s) 91
AcsI RAATTY 1 cut(s) 203
AfaI GTAC 2 cut(s) 42, 211
AgsI TTSAA 4 cut(s) 86, 97, 139, 174
AluBI AGCT 2 cut(s) 315, 329
AluI AGCT 2 cut(s) 315, 329
Alw21I GWGCWC 1 cut(s) 120
Alw44I GTGCAC 1 cut(s) 116
AoxI GGCC 1 cut(s) 191
ApaLI GTGCAC 1 cut(s) 116
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 120
BbsI GAAGAC 2 cut(s) 146, 272
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 158
BccI CCATC 3 cut(s) 40, 300, 363
BfaI CTAG 1 cut(s) 326
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
BmsI GCATC 1 cut(s) 121
BpiI GAAGAC 2 cut(s) 146, 272
Bse1I ACTGG 1 cut(s) 276
BseGI GGATG 3 cut(s) 136, 351, 355
BseNI ACTGG 1 cut(s) 276
BseSI GKGCMC 1 cut(s) 120
BseXI GCAGC 1 cut(s) 158
Bsh1236I CGCG 1 cut(s) 183
BshFI GGCC 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 120
BslFI GGGAC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 120
Bsp1407I TGTACA 1 cut(s) 209
BspACI CCGC 3 cut(s) 65, 144, 183
BspANI GGCC 1 cut(s) 193
BspFNI CGCG 1 cut(s) 183
BspHI TCATGA 1 cut(s) 346
BsrGI TGTACA 1 cut(s) 209
BsrI ACTGG 1 cut(s) 276
BstAUI TGTACA 1 cut(s) 209
BstF5I GGATG 3 cut(s) 136, 351, 355
BstFNI CGCG 1 cut(s) 183
BstSLI GKGCMC 1 cut(s) 120
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 158
BstV2I GAAGAC 2 cut(s) 146, 272
BsuRI GGCC 1 cut(s) 193
BtsCI GGATG 3 cut(s) 136, 351, 355
CciI TCATGA 1 cut(s) 346
Csp6I GTAC 2 cut(s) 41, 210
CviAII CATG 1 cut(s) 347
CviJI RGCY 4 cut(s) 149, 193, 315, 329
CviKI_1 RGCY 4 cut(s) 149, 193, 315, 329
CviQI GTAC 2 cut(s) 41, 210
EcoRI GAATTC 1 cut(s) 203
FaeI CATG 1 cut(s) 350
FaiI YATR 9 cut(s) 8, 63, 269, 271, 333, 338, 348, 365, 367
FaqI GGGAC 1 cut(s) 199
FatI CATG 1 cut(s) 346
FauI CCCGC 2 cut(s) 58, 176
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 3 cut(s) 143, 338, 342
Fsp4HI GCNGC 1 cut(s) 147
FspBI CTAG 1 cut(s) 326
GluI GCNGC 1 cut(s) 147
HaeIII GGCC 1 cut(s) 193
Hin1II CATG 1 cut(s) 350
HinfI GANTC 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 347
Hpy8I GTNNAC 1 cut(s) 118
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 3 cut(s) 71, 118, 224
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 1 cut(s) 350
LpnPI CCDG 3 cut(s) 144, 182, 289
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 1 cut(s) 121
MaeI CTAG 1 cut(s) 326
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 1 cut(s) 248
MboII GAAGA 2 cut(s) 151, 272
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 1 cut(s) 203
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 1 cut(s) 120
MvnI CGCG 1 cut(s) 183
NlaIII CATG 1 cut(s) 350
NmuCI GTSAC 1 cut(s) 248
PagI TCATGA 1 cut(s) 346
PkrI GCNGC 1 cut(s) 148
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp1406I AACGTT 1 cut(s) 91
RsaI GTAC 2 cut(s) 42, 211
RsaNI GTAC 2 cut(s) 41, 210
SatI GCNGC 1 cut(s) 147
SchI GAGTC 1 cut(s) 227
SduI GDGCHC 1 cut(s) 120
SetI ASST 5 cut(s) 94, 117, 317, 331, 346
SfaNI GCATC 1 cut(s) 121
Sse9I AATT 1 cut(s) 203
SsiI CCGC 3 cut(s) 65, 144, 183
SspI AATATT 1 cut(s) 106
SspMI CTAG 1 cut(s) 326
TaiI ACGT 1 cut(s) 94
TasI AATT 1 cut(s) 203
TatI WGTACW 1 cut(s) 209
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 248
VneI GTGCAC 1 cut(s) 116
XapI RAATTY 1 cut(s) 203
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.