Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006084.1

Orthogroup ID

OG0021181

Physical Location & Seq

Genomic Coordinates Forward (+)

66118 .. 66788

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006084.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atggttctgccaattttctataatgtggatccctctgatgtgaggaatcaaagaggcagttttgcagaagccttcactaagcatgaagaaaagtttaggcaaggcaatgacaatgtagagaaggcgaagaagtggagagttgctttaacaaaagtggccaatatatctcggtttgattcaaacaaatataggtctgacagagaacttgtccaacgcattgtggaagttgtgtgcagtgatgtacggcctatttcaataatgtcgaatggcggttttgaagcatttgaagcaacaagacaagccatggttgagctcatgaaggcattagaaaatgatgagttcgctgccattggggtctatggaatgggaggagttgggaagacaactctggtcaaataccttagtgctatagccctaaaaaagggcctttttgatcatgtgattatggctgttgtatcccaaaccccaaatacaagaaacattcaaggcacacttgcagatggtgctgagcttgaaattgaggaggagtcagaaattggacgagccgggattgcagaaggagatacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

189

Amino Acids

20.92

Weight (kDa)

5.37

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021181)

Species	Orthologous Gene IDs
malus_domestica	MD04G1034900.v1.1
pyrus_communis	pycom04g02970
rosa_laevigata	RLG00000033610
rosa_multiflora	Rmu_sc0006084.1_g000011 Rmu_sc0006803.1_g000037

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	270
AclWI	GGATC	2 cut(s)	23, 36
AcoI	YGGCCR	1 cut(s)	156
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	421
AgsI	TTSAA	6 cut(s)	180, 255, 278, 287, 485, 515
AluBI	AGCT	2 cut(s)	313, 511
AluI	AGCT	2 cut(s)	313, 511
Alw21I	GWGCWC	1 cut(s)	315
AlwI	GGATC	2 cut(s)	23, 36
AoxI	GGCC	3 cut(s)	156, 245, 424
ApeKI	GCWGC	1 cut(s)	344
AspS9I	GGNCC	1 cut(s)	424
AsuC2I	CCSGG	1 cut(s)	547
BalI	TGGCCA	1 cut(s)	158
BamHI	GGATCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	1 cut(s)	494
BceAI	ACGGC	1 cut(s)	260
BciVI	GTATCC	1 cut(s)	466
BclI	TGATCA	1 cut(s)	433
BcnI	CCSGG	1 cut(s)	547
BfmI	CTRYAG	1 cut(s)	408
BfuI	GTATCC	1 cut(s)	466
BisI	GCNGC	1 cut(s)	345
BlpI	GCTNAGC	1 cut(s)	507
BlsI	GCNGC	1 cut(s)	346
Bme1390I	CCNGG	1 cut(s)	547
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	547
BpiI	GAAGAC	1 cut(s)	386
Bpu1102I	GCTNAGC	1 cut(s)	507
BpuMI	CCSGG	1 cut(s)	547
BsaJI	CCNNGG	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	1 cut(s)	421
Bse3DI	GCAATG	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	421
BseMI	GCAATG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	498
BseRI	GAGGAG	3 cut(s)	384, 536, 539
BseXI	GCAGC	1 cut(s)	331
BsgI	GTGCAG	1 cut(s)	253
BshFI	GGCC	3 cut(s)	158, 247, 426
BsiHKAI	GWGCWC	1 cut(s)	315
BsiSI	CCGG	1 cut(s)	546
BslI	CCNNNNNNNGG	1 cut(s)	421
BsnI	GGCC	3 cut(s)	158, 247, 426
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	28, 433
Bsp1720I	GCTNAGC	1 cut(s)	507
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	1 cut(s)	270
BspANI	GGCC	3 cut(s)	158, 247, 426
BspCNI	CTCAG	1 cut(s)	499
BspHI	TCATGA	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	30
BspPI	GGATC	2 cut(s)	23, 36
BsrDI	GCAATG	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	2 cut(s)	28, 433
BssT1I	CCWWGG	1 cut(s)	303
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstDEI	CTNAG	4 cut(s)	78, 401, 507, 567
BstDSI	CCRYGG	1 cut(s)	303
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstKTI	GATC	2 cut(s)	31, 436
BstMBI	GATC	2 cut(s)	28, 433
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 503, 551
BstSCI	CCNGG	1 cut(s)	545
BstSFI	CTRYAG	1 cut(s)	408
BstV1I	GCAGC	1 cut(s)	331
BstV2I	GAAGAC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuI	GTATCC	1 cut(s)	466
BsuRI	GGCC	3 cut(s)	158, 247, 426
BtgI	CCRYGG	1 cut(s)	303
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	241
CciI	TCATGA	1 cut(s)	315
Cfr13I	GGNCC	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	4 cut(s)	83, 304, 316, 437
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	4 cut(s)	78, 401, 507, 567
DpnI	GATC	2 cut(s)	30, 435
DpnII	GATC	2 cut(s)	28, 433
EaeI	YGGCCR	1 cut(s)	156
Ecl136II	GAGCTC	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	315
Eco53kI	GAGCTC	1 cut(s)	313
EcoICRI	GAGCTC	1 cut(s)	313
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoO109I	RGGNCCY	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	4 cut(s)	86, 307, 319, 440
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FatI	CATG	4 cut(s)	82, 303, 315, 436
FbaI	TGATCA	1 cut(s)	433
Fnu4HI	GCNGC	1 cut(s)	345
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	1 cut(s)	345
GluI	GCNGC	1 cut(s)	345
HaeIII	GGCC	3 cut(s)	158, 247, 426
HapII	CCGG	1 cut(s)	546
Hin1II	CATG	4 cut(s)	86, 307, 319, 440
HinfI	GANTC	3 cut(s)	46, 176, 527
HpaII	CCGG	1 cut(s)	546
Hpy188I	TCNGA	3 cut(s)	37, 196, 532
Hpy188III	TCNNGA	1 cut(s)	316
HpyAV	CCTTC	4 cut(s)	82, 115, 313, 551
HpyCH4V	TGCA	4 cut(s)	65, 234, 497, 554
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 503, 551
HpyF3I	CTNAG	4 cut(s)	78, 401, 507, 567
Hsp92II	CATG	4 cut(s)	86, 307, 319, 440
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	2 cut(s)	28, 433
LpnPI	CCDG	2 cut(s)	374, 559
Lsp1109I	GCAGC	1 cut(s)	331
MalI	GATC	2 cut(s)	30, 435
MboI	GATC	2 cut(s)	28, 433
MboII	GAAGA	3 cut(s)	98, 139, 391
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	315
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	3 cut(s)	12, 516, 534
MluNI	TGGCCA	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	536
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	6 cut(s)	36, 43, 47, 362, 514, 517
Mox20I	TGGCCA	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	1 cut(s)	146
Msp20I	TGGCCA	1 cut(s)	158
MspI	CCGG	1 cut(s)	546
MspR9I	CCNGG	1 cut(s)	547
MwoI	GCNNNNNNNGC	3 cut(s)	287, 503, 551
NciI	CCSGG	1 cut(s)	547
NcoI	CCATGG	1 cut(s)	303
NdeII	GATC	2 cut(s)	28, 433
NlaIII	CATG	4 cut(s)	86, 307, 319, 440
NlaIV	GGNNCC	1 cut(s)	30
PagI	TCATGA	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	46, 176
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
Psp124BI	GAGCTC	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
SacI	GAGCTC	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	2 cut(s)	28, 433
Sau96I	GGNCC	1 cut(s)	424
SchI	GAGTC	1 cut(s)	536
ScrFI	CCNGG	1 cut(s)	547
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	4 cut(s)	194, 315, 402, 513
SfcI	CTRYAG	1 cut(s)	408
Sse9I	AATT	3 cut(s)	12, 516, 534
SsiI	CCGC	1 cut(s)	270
SstI	GAGCTC	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	545
StyI	CCWWGG	1 cut(s)	303
TaqI	TCGA	1 cut(s)	263
TasI	AATT	3 cut(s)	12, 516, 534
TfiI	GAWTC	2 cut(s)	46, 176
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	2 cut(s)	99, 332
TspRI	CASTG	1 cut(s)	241
XagI	CCTNNNNNAGG	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.