pycom04g02970

TMV resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0021181
Physical Location & Seq
Forward (+)
2720620 .. 2730316
9697 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g02970.1

Sequence Viewer

Length: 249 bp
ATGGTTATACCCGTATTTTACGACATCAATCCATCTGATGTACGAAAGCAACACGGGAGTTACGCGGGTGCATTTGCTCAACTTGAAAAACGTTTCAAGGACAATATTGATAAGGTGCACAAGTGGAGGGATGCTTTGAAGACTGCAGCCGATCTGTCTGGGTTTGATTATTCAAACAAACGCGGGAAACTCCAAATGTTGAAGCCATATTGCTTAGTTCGTGGTATGAGAGTGAAAAGCAACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIR

Protein Analysis

83

Amino Acids

9.5

Weight (kDa)

9.88

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 1 - 68 6.4e-13 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021181)

Species Orthologous Gene IDs
malus_domestica MD04G1034900.v1.1
pyrus_communis pycom04g02970
rosa_laevigata RLG00000033610
rosa_multiflora Rmu_sc0006084.1_g000011 Rmu_sc0006803.1_g000037

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 65, 183
AciI CCGC 2 cut(s) 65, 183
AclI AACGTT 1 cut(s) 91
AfaI GTAC 1 cut(s) 42
AgsI TTSAA 5 cut(s) 86, 97, 139, 174, 202
Alw21I GWGCWC 1 cut(s) 120
Alw44I GTGCAC 1 cut(s) 116
ApaLI GTGCAC 1 cut(s) 116
ApeKI GCWGC 1 cut(s) 146
BaeGI GKGCMC 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 40
BfmI CTRYAG 1 cut(s) 144
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
BmsI GCATC 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 146
BseGI GGATG 1 cut(s) 136
BseSI GKGCMC 1 cut(s) 120
BseXI GCAGC 1 cut(s) 158
Bsh1236I CGCG 2 cut(s) 65, 183
BsiHKAI GWGCWC 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 151
BspACI CCGC 2 cut(s) 65, 183
BspFNI CGCG 2 cut(s) 65, 183
BspMAI CTGCAG 1 cut(s) 148
BssMI GATC 1 cut(s) 151
BstDEI CTNAG 1 cut(s) 214
BstF5I GGATG 1 cut(s) 136
BstFNI CGCG 2 cut(s) 65, 183
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 144
BstSLI GKGCMC 1 cut(s) 120
BstUI CGCG 2 cut(s) 65, 183
BstV1I GCAGC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 244
Csp6I GTAC 1 cut(s) 41
CviJI RGCY 2 cut(s) 149, 205
CviKI_1 RGCY 2 cut(s) 149, 205
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 1 cut(s) 214
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
FaiI YATR 3 cut(s) 8, 208, 227
FauI CCCGC 2 cut(s) 58, 176
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 147
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 37
Hpy8I GTNNAC 1 cut(s) 118
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 3 cut(s) 71, 118, 146
HpyF3I CTNAG 1 cut(s) 214
HpySE526I ACGT 1 cut(s) 91
Kzo9I GATC 1 cut(s) 151
LpnPI CCDG 1 cut(s) 144
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 1 cut(s) 121
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 1 cut(s) 59
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 120
MnlI CCTC 1 cut(s) 120
MvnI CGCG 2 cut(s) 65, 183
NdeII GATC 1 cut(s) 151
PkrI GCNGC 1 cut(s) 148
Psp1406I AACGTT 1 cut(s) 91
PstI CTGCAG 1 cut(s) 148
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 1 cut(s) 151
SduI GDGCHC 1 cut(s) 120
SetI ASST 2 cut(s) 94, 117
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 1 cut(s) 144
SsiI CCGC 2 cut(s) 65, 183
SspI AATATT 1 cut(s) 106
TaiI ACGT 1 cut(s) 94
TseI GCWGC 1 cut(s) 146
VneI GTGCAC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.