Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0011153

Physical Location & Seq

Genomic Coordinates Reverse (-)

12542134 .. 12543065

Gene Structure 932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1086300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAATCAGGGTTTAGGTTTCTTGGATAAGGCAGCAATCAAGGACCCAAAAACTGAAGGTGGTAAAACTGCGATCGTAAACAAGTGGAGTTTATCAACCCTAACCGATGTTGAAGAAGTAAAAATGATCATCAGAATGCTACCAATCTGGGCCACTACCATCATGTTTTGGACAATTTATGCCCAAATGACCACATTCTCAGTGTCCCAAGCAACCACCATGAACCGCCACATCGGAAAATCGTTCCGAATTCCGCCGGCATCCCTCACTGCTTTCTTTGTAGGCAGCATTCTGTTAACTGTCCCGGTTTACGACCGGATTATAGTCCCAGTTGCAAGAAACTTACTAAAAAACCCTCAAGGACTAACCCCATTGCAGCGCATAGGGGTTGGTTTGGTATTCTCAATATTTTCCATGGTTGCAGCAGCACTCACAGAAGTCAAGCGTATGAATGCTGCAAGAGCACATGGTTTGACAGGCAATCCAAAGGCTGAGATCCCACTGAGTGTTTTCTGGCTGGTCCCACAGTTCTTCTTTGTGGGGTCAGGAGAAGCCTTCGTGTACATTGGGCAGCTGGACTTCTTCCTCAGGGAGTGCCCGAAAGGAATGAAGACTATGAGCACAGGGCTGTTTCTGAGCACCCTCTCATTAGGGTTTTTCGTGAGCTCACTGTTGGTGAGTTTAGTGCACAAGGTGACAGGGGACAGGAAACCATGGTTTGCAAACAATATCAACCGAGGAAAGCTTTATGATTTCTATTGGCTTTTAGCGCTTTTGAGTGCTTTGAATTTGGTGGTCTATTTGTTTTGTGCCAATTGGTATGTCTACAAGGACAAGAGGCTTGCTGAGGAGGGCATAGAATTGGAGGAAGTAGAGACTTGTGTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0034220 GO:0042221 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0071944 GO:0098656 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

297

Amino Acids

33.15

Weight (kDa)

9.38

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	20 - 234	7.9e-60	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12110
fragaria_vesca	FvH4_5g00150 FvH4_5g00150 FvH4_5g00150
malus_domestica	MD04G1086300.v1.1
prunus_persica	Prupe.5G073600_v2.0.a1 Prupe.5G073600_v2.0.a1
pyrus_communis	pycom04g07780 pycom06g06190
rosa_chinensis	RchiOBHm_Chr7g0202731
rosa_laevigata	RLG00000003575
rosa_multiflora	Rmu_sc0002158.1_g000012 Rmu_sc0002590.1_g000002
rosa_roxburghii	Rroxscaffold_3G00254330
rosa_rugosa	Rorug07G0073000 Rorug07G0073000
rosa_samantha	Rh7AG200300 Rh7BG200900 Rh7DG207200
rosa_wichuraiana	Rw7G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	825
AciI	CCGC	2 cut(s)	226, 254
AclWI	GGATC	1 cut(s)	490
AcsI	RAATTY	2 cut(s)	249, 787
AcuI	CTGAAG	1 cut(s)	75
AdeI	CACNNNGTG	2 cut(s)	506, 694
AfaI	GTAC	1 cut(s)	563
AfeI	AGCGCT	1 cut(s)	771
AgsI	TTSAA	2 cut(s)	113, 787
AluBI	AGCT	3 cut(s)	574, 666, 745
AluI	AGCT	3 cut(s)	574, 666, 745
Alw21I	GWGCWC	5 cut(s)	466, 623, 641, 668, 690
Alw26I	GTCTC	1 cut(s)	869
Alw44I	GTGCAC	1 cut(s)	686
AlwI	GGATC	1 cut(s)	490
Aor51HI	AGCGCT	1 cut(s)	771
AoxI	GGCC	1 cut(s)	150
ApaLI	GTGCAC	1 cut(s)	686
ApeKI	GCWGC	7 cut(s)	32, 285, 376, 422, 425, 455, 571
ApoI	RAATTY	2 cut(s)	249, 787
AspLEI	GCGC	2 cut(s)	381, 772
AspS9I	GGNCC	3 cut(s)	43, 150, 520
AsuC2I	CCSGG	1 cut(s)	305
AsuHPI	GGTGA	2 cut(s)	688, 706
AvaII	GGWCC	2 cut(s)	43, 520
AxyI	CCTNAGG	1 cut(s)	587
BaeGI	GKGCMC	2 cut(s)	599, 690
BanII	GRGCYC	1 cut(s)	668
BbsI	GAAGAC	1 cut(s)	617
Bbv12I	GWGCWC	5 cut(s)	466, 623, 641, 668, 690
BbvCI	CCTCAGC	1 cut(s)	846
BbvI	GCAGC	7 cut(s)	44, 297, 388, 434, 437, 442, 583
BccI	CCATC	1 cut(s)	167
BclI	TGATCA	1 cut(s)	126
BcnI	CCSGG	1 cut(s)	305
BcoDI	GTCTC	1 cut(s)	869
BfoI	RGCGCY	1 cut(s)	773
BisI	GCNGC	7 cut(s)	33, 286, 377, 423, 426, 456, 572
BlsI	GCNGC	7 cut(s)	34, 287, 378, 424, 427, 457, 573
Bme1390I	CCNGG	1 cut(s)	305
Bme18I	GGWCC	2 cut(s)	43, 520
BmgT120I	GGNCC	3 cut(s)	43, 150, 520
BmiI	GGNNCC	2 cut(s)	45, 522
BmrFI	CCNGG	1 cut(s)	305
BmrI	ACTGGG	1 cut(s)	323
BmsI	GCATC	1 cut(s)	269
BmuI	ACTGGG	1 cut(s)	323
BpiI	GAAGAC	1 cut(s)	617
Bpu10I	CCTNAGC	1 cut(s)	846
BpuEI	CTTGAG	1 cut(s)	342
BpuMI	CCSGG	1 cut(s)	305
BsaJI	CCNNGG	3 cut(s)	414, 713, 736
BsaWI	WCCGGW	1 cut(s)	315
Bse118I	RCCGGY	1 cut(s)	256
Bse1I	ACTGG	1 cut(s)	329
Bse21I	CCTNAGG	1 cut(s)	587
Bse3DI	GCAATG	1 cut(s)	371
BseDI	CCNNGG	3 cut(s)	414, 713, 736
BseGI	GGATG	1 cut(s)	260
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	6 cut(s)	213, 483, 494, 601, 626, 837
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	863
BseSI	GKGCMC	2 cut(s)	599, 690
BseXI	GCAGC	7 cut(s)	44, 297, 388, 434, 437, 442, 583
Bsh1285I	CGRYCG	2 cut(s)	75, 316
BshFI	GGCC	1 cut(s)	152
BsiEI	CGRYCG	2 cut(s)	75, 316
BsiHKAI	GWGCWC	5 cut(s)	466, 623, 641, 668, 690
BsiSI	CCGG	3 cut(s)	257, 305, 316
BslFI	GGGAC	5 cut(s)	190, 287, 311, 506, 716
BsmAI	GTCTC	1 cut(s)	869
BsmFI	GGGAC	5 cut(s)	190, 287, 311, 506, 716
BsmI	GAATGC	3 cut(s)	141, 288, 457
BsnI	GGCC	1 cut(s)	152
Bsp1286I	GDGCHC	6 cut(s)	466, 599, 623, 641, 668, 690
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	3 cut(s)	72, 126, 495
Bsp19I	CCATGG	2 cut(s)	414, 713
BspACI	CCGC	2 cut(s)	226, 254
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	6 cut(s)	212, 484, 495, 600, 627, 838
BspLI	GGNNCC	2 cut(s)	45, 522
BspPI	GGATC	1 cut(s)	490
BsrDI	GCAATG	1 cut(s)	371
BsrFI	RCCGGY	1 cut(s)	256
BsrGI	TGTACA	1 cut(s)	561
BsrI	ACTGG	1 cut(s)	329
BssAI	RCCGGY	1 cut(s)	256
BssECI	CCNNGG	3 cut(s)	414, 713, 736
BssMI	GATC	3 cut(s)	72, 126, 495
BssT1I	CCWWGG	2 cut(s)	414, 713
Bst4CI	ACNGT	3 cut(s)	301, 528, 672
BstAUI	TGTACA	1 cut(s)	561
BstC8I	GCNNGC	2 cut(s)	258, 843
BstDEI	CTNAG	6 cut(s)	199, 492, 503, 587, 635, 846
BstDSI	CCRYGG	2 cut(s)	414, 713
BstF5I	GGATG	1 cut(s)	260
BstH2I	RGCGCY	1 cut(s)	773
BstHHI	GCGC	2 cut(s)	381, 772
BstKTI	GATC	3 cut(s)	75, 129, 498
BstMAI	GTCTC	1 cut(s)	869
BstMBI	GATC	3 cut(s)	72, 126, 495
BstMCI	CGRYCG	2 cut(s)	75, 316
BstMWI	GCNNNNNNNGC	2 cut(s)	461, 769
BstSCI	CCNGG	1 cut(s)	303
BstSLI	GKGCMC	2 cut(s)	599, 690
BstV1I	GCAGC	7 cut(s)	44, 297, 388, 434, 437, 442, 583
BstV2I	GAAGAC	1 cut(s)	617
BstX2I	RGATCY	1 cut(s)	495
BstYI	RGATCY	1 cut(s)	495
Bsu36I	CCTNAGG	1 cut(s)	587
BsuRI	GGCC	1 cut(s)	152
BtgI	CCRYGG	2 cut(s)	414, 713
BtsCI	GGATG	1 cut(s)	260
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	4 cut(s)	207, 267, 500, 668
Cac8I	GCNNGC	2 cut(s)	258, 843
CfoI	GCGC	2 cut(s)	381, 772
Cfr10I	RCCGGY	1 cut(s)	256
Cfr13I	GGNCC	3 cut(s)	43, 150, 520
Csp6I	GTAC	1 cut(s)	562
CviAII	CATG	5 cut(s)	163, 220, 415, 467, 714
CviQI	GTAC	1 cut(s)	562
DdeI	CTNAG	6 cut(s)	199, 492, 503, 587, 635, 846
DpnI	GATC	3 cut(s)	74, 128, 497
DpnII	GATC	3 cut(s)	72, 126, 495
DraIII	CACNNNGTG	2 cut(s)	506, 694
EciI	GGCGGA	1 cut(s)	243
Ecl136II	GAGCTC	1 cut(s)	666
Eco130I	CCWWGG	2 cut(s)	414, 713
Eco24I	GRGCYC	1 cut(s)	668
Eco47I	GGWCC	2 cut(s)	43, 520
Eco47III	AGCGCT	1 cut(s)	771
Eco53kI	GAGCTC	1 cut(s)	666
Eco57I	CTGAAG	1 cut(s)	75
Eco81I	CCTNAGG	1 cut(s)	587
EcoICRI	GAGCTC	1 cut(s)	666
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRI	GAATTC	1 cut(s)	249
EcoT14I	CCWWGG	2 cut(s)	414, 713
EcoT38I	GRGCYC	1 cut(s)	668
ErhI	CCWWGG	2 cut(s)	414, 713
FaeI	CATG	5 cut(s)	166, 223, 418, 470, 717
FaqI	GGGAC	5 cut(s)	190, 287, 311, 506, 716
FatI	CATG	5 cut(s)	162, 219, 414, 466, 713
FbaI	TGATCA	1 cut(s)	126
FblI	GTMKAC	1 cut(s)	825
Fnu4HI	GCNGC	7 cut(s)	33, 286, 377, 423, 426, 456, 572
FokI	GGATG	1 cut(s)	247
FriOI	GRGCYC	1 cut(s)	668
Fsp4HI	GCNGC	7 cut(s)	33, 286, 377, 423, 426, 456, 572
GlaI	GCGC	2 cut(s)	380, 771
GluI	GCNGC	7 cut(s)	33, 286, 377, 423, 426, 456, 572
HaeII	RGCGCY	1 cut(s)	773
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	3 cut(s)	257, 305, 316
HhaI	GCGC	2 cut(s)	381, 772
Hin1II	CATG	5 cut(s)	166, 223, 418, 470, 717
Hin6I	GCGC	2 cut(s)	379, 770
HinP1I	GCGC	2 cut(s)	379, 770
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HindIII	AAGCTT	1 cut(s)	743
HinfI	GANTC	1 cut(s)	4
HpaI	GTTAAC	1 cut(s)	297
HpaII	CCGG	3 cut(s)	257, 305, 316
HphI	GGTGA	2 cut(s)	688, 706
Hpy166II	GTNNAC	6 cut(s)	79, 297, 310, 562, 688, 826
Hpy188I	TCNGA	4 cut(s)	134, 236, 248, 636
Hpy188III	TCNNGA	2 cut(s)	546, 661
Hpy8I	GTNNAC	6 cut(s)	79, 297, 310, 562, 688, 826
HpyAV	CCTTC	2 cut(s)	50, 565
HpyCH4III	ACNGT	3 cut(s)	301, 528, 672
HpyCH4V	TGCA	7 cut(s)	335, 376, 422, 458, 688, 722, 886
HpyF10VI	GCNNNNNNNGC	2 cut(s)	461, 769
HpyF3I	CTNAG	6 cut(s)	199, 492, 503, 587, 635, 846
Hsp92II	CATG	5 cut(s)	166, 223, 418, 470, 717
HspAI	GCGC	2 cut(s)	379, 770
KroI	GCCGGC	1 cut(s)	256
KroNI	GCCGGC	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	126
KspAI	GTTAAC	1 cut(s)	297
Kzo9I	GATC	3 cut(s)	72, 126, 495
Lsp1109I	GCAGC	7 cut(s)	44, 297, 388, 434, 437, 442, 583
LweI	GCATC	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	694
MalI	GATC	3 cut(s)	74, 128, 497
MboI	GATC	3 cut(s)	72, 126, 495
MboII	GAAGA	4 cut(s)	125, 523, 574, 622
MfeI	CAATTG	1 cut(s)	814
MflI	RGATCY	1 cut(s)	495
MhlI	GDGCHC	6 cut(s)	466, 599, 623, 641, 668, 690
MluCI	AATT	5 cut(s)	174, 249, 787, 814, 860
MnlI	CCTC	9 cut(s)	275, 366, 596, 653, 731, 831, 841, 844, 859
MroNI	GCCGGC	1 cut(s)	256
MseI	TTAA	2 cut(s)	296, 889
MslI	CAYNNNNRTG	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	574
MspI	CCGG	3 cut(s)	257, 305, 316
MspR9I	CCNGG	1 cut(s)	305
MunI	CAATTG	1 cut(s)	814
Mva1269I	GAATGC	3 cut(s)	141, 288, 457
MwoI	GCNNNNNNNGC	2 cut(s)	461, 769
NaeI	GCCGGC	1 cut(s)	258
NciI	CCSGG	1 cut(s)	305
NcoI	CCATGG	2 cut(s)	414, 713
NdeII	GATC	3 cut(s)	72, 126, 495
NgoMIV	GCCGGC	1 cut(s)	256
NlaIII	CATG	5 cut(s)	166, 223, 418, 470, 717
NlaIV	GGNNCC	2 cut(s)	45, 522
NmuCI	GTSAC	1 cut(s)	694
PctI	GAATGC	3 cut(s)	141, 288, 457
PdiI	GCCGGC	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	7 cut(s)	34, 287, 378, 424, 427, 457, 573
Ple19I	CGATCG	1 cut(s)	75
PpuMI	RGGWCCY	1 cut(s)	43
Psp124BI	GAGCTC	1 cut(s)	668
Psp5II	RGGWCCY	1 cut(s)	43
PspN4I	GGNNCC	2 cut(s)	45, 522
PspPI	GGNCC	3 cut(s)	43, 150, 520
PspPPI	RGGWCCY	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	495
PvuI	CGATCG	1 cut(s)	75
PvuII	CAGCTG	1 cut(s)	574
RsaI	GTAC	1 cut(s)	563
RsaNI	GTAC	1 cut(s)	562
RseI	CAYNNNNRTG	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	668
SaqAI	TTAA	2 cut(s)	296, 889
SatI	GCNGC	7 cut(s)	33, 286, 377, 423, 426, 456, 572
Sau3AI	GATC	3 cut(s)	72, 126, 495
Sau96I	GGNCC	3 cut(s)	43, 150, 520
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	6 cut(s)	466, 599, 623, 641, 668, 690
SetI	ASST	6 cut(s)	19, 61, 576, 668, 696, 747
SfaNI	GCATC	1 cut(s)	269
SinI	GGWCC	2 cut(s)	43, 520
SmiMI	CAYNNNNRTG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
Sse9I	AATT	5 cut(s)	174, 249, 787, 814, 860
SsiI	CCGC	2 cut(s)	226, 254
SspI	AATATT	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	668
StyD4I	CCNGG	1 cut(s)	303
StyI	CCWWGG	2 cut(s)	414, 713
TaaI	ACNGT	3 cut(s)	301, 528, 672
TasI	AATT	5 cut(s)	174, 249, 787, 814, 860
TatI	WGTACW	1 cut(s)	561
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	296, 889
Tru9I	TTAA	2 cut(s)	296, 889
TscAI	CASTG	4 cut(s)	207, 274, 507, 675
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	7 cut(s)	32, 285, 376, 422, 425, 455, 571
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	4 cut(s)	17, 236, 464, 623
TspRI	CASTG	4 cut(s)	207, 274, 507, 675
VneI	GTGCAC	1 cut(s)	686
VpaK11BI	GGWCC	2 cut(s)	43, 520
XapI	RAATTY	2 cut(s)	249, 787
XmiI	GTMKAC	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.