Nitrate transporter
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G12110 |
| fragaria_vesca | FvH4_5g00150 FvH4_5g00150 FvH4_5g00150 |
| malus_domestica | MD04G1086300.v1.1 |
| prunus_persica | Prupe.5G073600_v2.0.a1 Prupe.5G073600_v2.0.a1 |
| pyrus_communis | pycom04g07780 pycom06g06190 |
| rosa_chinensis | RchiOBHm_Chr7g0202731 |
| rosa_laevigata | RLG00000003575 |
| rosa_multiflora | Rmu_sc0002158.1_g000012 Rmu_sc0002590.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00254330 |
| rosa_rugosa | Rorug07G0073000 Rorug07G0073000 |
| rosa_samantha | Rh7AG200300 Rh7BG200900 Rh7DG207200 |
| rosa_wichuraiana | Rw7G017530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1162 |
| Acc36I | ACCTGC | 1 cut(s) | 1162 |
| Acc65I | GGTACC | 1 cut(s) | 732 |
| AccB1I | GGYRCC | 2 cut(s) | 485, 732 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 340 |
| AccBSI | CCGCTC | 1 cut(s) | 82 |
| AccI | GTMKAC | 3 cut(s) | 636, 1074, 1206 |
| AclI | AACGTT | 1 cut(s) | 846 |
| AclWI | GGATC | 1 cut(s) | 1387 |
| AcoI | YGGCCR | 2 cut(s) | 108, 282 |
| AcsI | RAATTY | 1 cut(s) | 1684 |
| AdeI | CACNNNGTG | 1 cut(s) | 1403 |
| AfaI | GTAC | 5 cut(s) | 13, 247, 734, 842, 961 |
| AfeI | AGCGCT | 1 cut(s) | 1343 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 81, 340, 434, 919 |
| AflIII | ACRYGT | 1 cut(s) | 828 |
| AgsI | TTSAA | 6 cut(s) | 64, 580, 742, 1145, 1348, 1684 |
| AjnI | CCWGG | 2 cut(s) | 53, 480 |
| AleI | CACNNNNGTG | 1 cut(s) | 1580 |
| AluBI | AGCT | 6 cut(s) | 987, 1169, 1325, 1471, 1563, 1642 |
| AluI | AGCT | 6 cut(s) | 987, 1169, 1325, 1471, 1563, 1642 |
| Alw21I | GWGCWC | 2 cut(s) | 1520, 1538 |
| AlwI | GGATC | 1 cut(s) | 1387 |
| Aor51HI | AGCGCT | 1 cut(s) | 1343 |
| AoxI | GGCC | 8 cut(s) | 67, 108, 282, 493, 700, 1047, 1288, 1449 |
| ApeKI | GCWGC | 6 cut(s) | 756, 929, 1182, 1319, 1322, 1468 |
| ApoI | RAATTY | 1 cut(s) | 1684 |
| Asp718I | GGTACC | 1 cut(s) | 732 |
| AspLEI | GCGC | 1 cut(s) | 1344 |
| AspS9I | GGNCC | 6 cut(s) | 67, 84, 1047, 1120, 1417, 1440 |
| AsuC2I | CCSGG | 3 cut(s) | 47, 428, 1444 |
| AsuHPI | GGTGA | 4 cut(s) | 187, 223, 616, 1702 |
| AvaII | GGWCC | 4 cut(s) | 84, 1120, 1417, 1440 |
| AxyI | CCTNAGG | 2 cut(s) | 1484, 1497 |
| BaeGI | GKGCMC | 4 cut(s) | 488, 1496, 1602, 1783 |
| BanI | GGYRCC | 2 cut(s) | 485, 732 |
| BbsI | GAAGAC | 2 cut(s) | 565, 1514 |
| Bbv12I | GWGCWC | 2 cut(s) | 1520, 1538 |
| BbvCI | CCTCAGC | 1 cut(s) | 1743 |
| BbvI | GCAGC | 6 cut(s) | 768, 941, 1194, 1331, 1334, 1480 |
| BccI | CCATC | 2 cut(s) | 320, 857 |
| BceAI | ACGGC | 2 cut(s) | 120, 1401 |
| BciT130I | CCWGG | 2 cut(s) | 55, 482 |
| BclI | TGATCA | 1 cut(s) | 969 |
| BcnI | CCSGG | 3 cut(s) | 47, 428, 1444 |
| BfaI | CTAG | 4 cut(s) | 122, 155, 1244, 1292 |
| BfmI | CTRYAG | 1 cut(s) | 1593 |
| BfoI | RGCGCY | 1 cut(s) | 1345 |
| BfuAI | ACCTGC | 1 cut(s) | 1162 |
| BlpI | GCTNAGC | 1 cut(s) | 78 |
| Bme1390I | CCNGG | 5 cut(s) | 47, 55, 428, 482, 1444 |
| Bme18I | GGWCC | 4 cut(s) | 84, 1120, 1417, 1440 |
| BmgT120I | GGNCC | 6 cut(s) | 67, 84, 1047, 1120, 1417, 1440 |
| BmiI | GGNNCC | 7 cut(s) | 193, 487, 734, 942, 1419, 1441, 1767 |
| BmrFI | CCNGG | 5 cut(s) | 47, 55, 428, 482, 1444 |
| BmrI | ACTGGG | 1 cut(s) | 1196 |
| BmsI | GCATC | 2 cut(s) | 40, 432 |
| BmuI | ACTGGG | 1 cut(s) | 1196 |
| BpiI | GAAGAC | 2 cut(s) | 565, 1514 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 806, 838 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1743 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 78 |
| BpuEI | CTTGAG | 2 cut(s) | 854, 1552 |
| BpuMI | CCSGG | 3 cut(s) | 47, 428, 1444 |
| BsaJI | CCNNGG | 8 cut(s) | 54, 480, 481, 1116, 1227, 1443, 1610, 1633 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 81, 340, 434, 919 |
| Bse118I | RCCGGY | 3 cut(s) | 410, 488, 1212 |
| Bse1I | ACTGG | 5 cut(s) | 97, 193, 587, 753, 1202 |
| Bse21I | CCTNAGG | 2 cut(s) | 1484, 1497 |
| Bse3DI | GCAATG | 5 cut(s) | 214, 345, 668, 1268, 1317 |
| BseBI | CCWGG | 2 cut(s) | 55, 482 |
| BseDI | CCNNGG | 8 cut(s) | 54, 480, 481, 1116, 1227, 1443, 1610, 1633 |
| BseGI | GGATG | 3 cut(s) | 55, 423, 1509 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 81, 340, 434, 919 |
| BseMI | GCAATG | 5 cut(s) | 214, 345, 668, 1268, 1317 |
| BseMII | CTCAG | 9 cut(s) | 69, 537, 782, 1110, 1380, 1391, 1498, 1664, 1734 |
| BseNI | ACTGG | 5 cut(s) | 97, 193, 587, 753, 1202 |
| BseRI | GAGGAG | 1 cut(s) | 1760 |
| BseSI | GKGCMC | 4 cut(s) | 488, 1496, 1602, 1783 |
| BseX3I | CGGCCG | 1 cut(s) | 108 |
| BseXI | GCAGC | 6 cut(s) | 768, 941, 1194, 1331, 1334, 1480 |
| BseYI | CCCAGC | 1 cut(s) | 377 |
| Bsh1285I | CGRYCG | 2 cut(s) | 111, 1213 |
| BshFI | GGCC | 8 cut(s) | 69, 110, 284, 495, 702, 1049, 1290, 1451 |
| BshNI | GGYRCC | 2 cut(s) | 485, 732 |
| BsiEI | CGRYCG | 2 cut(s) | 111, 1213 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1520, 1538 |
| BsiSI | CCGG | 6 cut(s) | 47, 411, 428, 489, 1213, 1443 |
| BslFI | GGGAC | 4 cut(s) | 71, 1184, 1208, 1403 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 81, 340, 434, 919 |
| BsmFI | GGGAC | 4 cut(s) | 71, 1184, 1208, 1403 |
| BsmI | GAATGC | 1 cut(s) | 1185 |
| BsnI | GGCC | 8 cut(s) | 69, 110, 284, 495, 702, 1049, 1290, 1451 |
| Bsp1286I | GDGCHC | 6 cut(s) | 488, 1496, 1520, 1538, 1602, 1783 |
| Bsp1407I | TGTACA | 1 cut(s) | 840 |
| Bsp143I | GATC | 4 cut(s) | 969, 1358, 1392, 1692 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 78 |
| Bsp19I | CCATGG | 3 cut(s) | 1116, 1227, 1610 |
| BspANI | GGCC | 8 cut(s) | 69, 110, 284, 495, 702, 1049, 1290, 1451 |
| BspCNI | CTCAG | 9 cut(s) | 70, 536, 781, 1109, 1381, 1392, 1497, 1665, 1735 |
| BspLI | GGNNCC | 7 cut(s) | 193, 487, 734, 942, 1419, 1441, 1767 |
| BspMI | ACCTGC | 1 cut(s) | 1162 |
| BspPI | GGATC | 1 cut(s) | 1387 |
| BspT107I | GGYRCC | 2 cut(s) | 485, 732 |
| BsrBI | CCGCTC | 1 cut(s) | 82 |
| BsrDI | GCAATG | 5 cut(s) | 214, 345, 668, 1268, 1317 |
| BsrFI | RCCGGY | 3 cut(s) | 410, 488, 1212 |
| BsrGI | TGTACA | 1 cut(s) | 840 |
| BsrI | ACTGG | 5 cut(s) | 97, 193, 587, 753, 1202 |
| BssAI | RCCGGY | 3 cut(s) | 410, 488, 1212 |
| BssECI | CCNNGG | 8 cut(s) | 54, 480, 481, 1116, 1227, 1443, 1610, 1633 |
| BssMI | GATC | 4 cut(s) | 969, 1358, 1392, 1692 |
| BssNAI | GTATAC | 1 cut(s) | 1207 |
| BssT1I | CCWWGG | 4 cut(s) | 1116, 1227, 1610, 1633 |
| Bst1107I | GTATAC | 1 cut(s) | 1207 |
| Bst2UI | CCWGG | 2 cut(s) | 55, 482 |
| Bst4CI | ACNGT | 7 cut(s) | 229, 628, 732, 737, 1072, 1198, 1425 |
| Bst6I | CTCTTC | 1 cut(s) | 797 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 420, 892 |
| BstAUI | TGTACA | 1 cut(s) | 840 |
| BstC8I | GCNNGC | 6 cut(s) | 266, 433, 440, 905, 1617, 1740 |
| BstDSI | CCRYGG | 3 cut(s) | 1116, 1227, 1610 |
| BstF5I | GGATG | 3 cut(s) | 55, 423, 1509 |
| BstH2I | RGCGCY | 1 cut(s) | 1345 |
| BstHHI | GCGC | 1 cut(s) | 1344 |
| BstKTI | GATC | 4 cut(s) | 972, 1361, 1395, 1695 |
| BstMBI | GATC | 4 cut(s) | 969, 1358, 1392, 1692 |
| BstMCI | CGRYCG | 2 cut(s) | 111, 1213 |
| BstNI | CCWGG | 2 cut(s) | 55, 482 |
| BstNSI | RCATGY | 1 cut(s) | 832 |
| BstSCI | CCNGG | 5 cut(s) | 45, 53, 426, 480, 1442 |
| BstSFI | CTRYAG | 1 cut(s) | 1593 |
| BstSLI | GKGCMC | 4 cut(s) | 488, 1496, 1602, 1783 |
| BstV1I | GCAGC | 6 cut(s) | 768, 941, 1194, 1331, 1334, 1480 |
| BstV2I | GAAGAC | 2 cut(s) | 565, 1514 |
| BstX2I | RGATCY | 1 cut(s) | 1392 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 202 |
| BstYI | RGATCY | 1 cut(s) | 1392 |
| BstZ17I | GTATAC | 1 cut(s) | 1207 |
| BstZI | CGGCCG | 1 cut(s) | 108 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1484, 1497 |
| BsuRI | GGCC | 8 cut(s) | 69, 110, 284, 495, 702, 1049, 1290, 1451 |
| BtgI | CCRYGG | 3 cut(s) | 1116, 1227, 1610 |
| BtgZI | GCGATG | 2 cut(s) | 298, 1336 |
| BtsCI | GGATG | 3 cut(s) | 55, 423, 1509 |
| BtsIMutI | CAGTG | 2 cut(s) | 1104, 1397 |
| BveI | ACCTGC | 1 cut(s) | 1162 |
| Cac8I | GCNNGC | 6 cut(s) | 266, 433, 440, 905, 1617, 1740 |
| CciNI | GCGGCCGC | 1 cut(s) | 108 |
| CfoI | GCGC | 1 cut(s) | 1344 |
| Cfr10I | RCCGGY | 3 cut(s) | 410, 488, 1212 |
| Cfr13I | GGNCC | 6 cut(s) | 67, 84, 1047, 1120, 1417, 1440 |
| Csp6I | GTAC | 5 cut(s) | 12, 246, 733, 841, 960 |
| CviQI | GTAC | 5 cut(s) | 12, 246, 733, 841, 960 |
| DpnI | GATC | 4 cut(s) | 971, 1360, 1394, 1694 |
| DpnII | GATC | 4 cut(s) | 969, 1358, 1392, 1692 |
| DraIII | CACNNNGTG | 1 cut(s) | 1403 |
| EaeI | YGGCCR | 2 cut(s) | 108, 282 |
| EagI | CGGCCG | 1 cut(s) | 108 |
| Eam1104I | CTCTTC | 1 cut(s) | 797 |
| EarI | CTCTTC | 1 cut(s) | 797 |
| EclXI | CGGCCG | 1 cut(s) | 108 |
| Eco130I | CCWWGG | 4 cut(s) | 1116, 1227, 1610, 1633 |
| Eco147I | AGGCCT | 1 cut(s) | 1451 |
| Eco32I | GATATC | 1 cut(s) | 774 |
| Eco47I | GGWCC | 4 cut(s) | 84, 1120, 1417, 1440 |
| Eco47III | AGCGCT | 1 cut(s) | 1343 |
| Eco52I | CGGCCG | 1 cut(s) | 108 |
| Eco81I | CCTNAGG | 2 cut(s) | 1484, 1497 |
| EcoRII | CCWGG | 2 cut(s) | 53, 480 |
| EcoRV | GATATC | 1 cut(s) | 774 |
| EcoT14I | CCWWGG | 4 cut(s) | 1116, 1227, 1610, 1633 |
| EcoT22I | ATGCAT | 1 cut(s) | 1789 |
| ErhI | CCWWGG | 4 cut(s) | 1116, 1227, 1610, 1633 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 971, 1003, 1626, 1658 |
| FaqI | GGGAC | 4 cut(s) | 71, 1184, 1208, 1403 |
| FauI | CCCGC | 1 cut(s) | 82 |
| FauNDI | CATATG | 1 cut(s) | 677 |
| FbaI | TGATCA | 1 cut(s) | 969 |
| FblI | GTMKAC | 3 cut(s) | 636, 1074, 1206 |
| FokI | GGATG | 3 cut(s) | 62, 410, 1516 |
| FspBI | CTAG | 4 cut(s) | 122, 155, 1244, 1292 |
| GlaI | GCGC | 1 cut(s) | 1343 |
| GsaI | CCCAGC | 1 cut(s) | 381 |
| HaeII | RGCGCY | 1 cut(s) | 1345 |
| HaeIII | GGCC | 8 cut(s) | 69, 110, 284, 495, 702, 1049, 1290, 1451 |
| HapII | CCGG | 6 cut(s) | 47, 411, 428, 489, 1213, 1443 |
| HhaI | GCGC | 1 cut(s) | 1344 |
| Hin6I | GCGC | 1 cut(s) | 1342 |
| HinP1I | GCGC | 1 cut(s) | 1342 |
| HincII | GTYRAC | 1 cut(s) | 169 |
| HindII | GTYRAC | 1 cut(s) | 169 |
| HindIII | AAGCTT | 1 cut(s) | 1640 |
| HinfI | GANTC | 4 cut(s) | 118, 539, 766, 867 |
| HpaI | GTTAAC | 1 cut(s) | 169 |
| HpaII | CCGG | 6 cut(s) | 47, 411, 428, 489, 1213, 1443 |
| HphI | GGTGA | 4 cut(s) | 187, 223, 616, 1702 |
| Hpy166II | GTNNAC | 5 cut(s) | 169, 637, 1075, 1207, 1723 |
| Hpy188I | TCNGA | 8 cut(s) | 386, 406, 526, 544, 771, 826, 1031, 1674 |
| Hpy188III | TCNNGA | 5 cut(s) | 720, 742, 871, 1192, 1531 |
| Hpy8I | GTNNAC | 5 cut(s) | 169, 637, 1075, 1207, 1723 |
| HpyAV | CCTTC | 3 cut(s) | 262, 340, 1462 |
| HpyCH4III | ACNGT | 7 cut(s) | 229, 628, 732, 737, 1072, 1198, 1425 |
| HpyCH4IV | ACGT | 1 cut(s) | 846 |
| HpyCH4V | TGCA | 8 cut(s) | 199, 399, 423, 689, 1273, 1310, 1585, 1787 |
| HpySE526I | ACGT | 1 cut(s) | 846 |
| HspAI | GCGC | 1 cut(s) | 1342 |
| KpnI | GGTACC | 1 cut(s) | 736 |
| Ksp22I | TGATCA | 1 cut(s) | 969 |
| KspAI | GTTAAC | 1 cut(s) | 169 |
| Kzo9I | GATC | 4 cut(s) | 969, 1358, 1392, 1692 |
| LmnI | GCTCC | 1 cut(s) | 984 |
| Lsp1109I | GCAGC | 6 cut(s) | 768, 941, 1194, 1331, 1334, 1480 |
| LweI | GCATC | 2 cut(s) | 40, 432 |
| MaeI | CTAG | 4 cut(s) | 122, 155, 1244, 1292 |
| MaeII | ACGT | 1 cut(s) | 846 |
| MaeIII | GTNAC | 6 cut(s) | 175, 229, 346, 622, 1101, 1573 |
| MalI | GATC | 4 cut(s) | 971, 1360, 1394, 1694 |
| MbiI | CCGCTC | 1 cut(s) | 82 |
| MboI | GATC | 4 cut(s) | 969, 1358, 1392, 1692 |
| MfeI | CAATTG | 2 cut(s) | 690, 1711 |
| MflI | RGATCY | 1 cut(s) | 1392 |
| MhlI | GDGCHC | 6 cut(s) | 488, 1496, 1520, 1538, 1602, 1783 |
| MlyI | GAGTC | 3 cut(s) | 548, 760, 861 |
| MmeI | TCCRAC | 4 cut(s) | 409, 429, 849, 1406 |
| Mph1103I | ATGCAT | 1 cut(s) | 1789 |
| MseI | TTAA | 1 cut(s) | 168 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1058, 1580 |
| MspA1I | CMGCKG | 1 cut(s) | 77 |
| MspI | CCGG | 6 cut(s) | 47, 411, 428, 489, 1213, 1443 |
| MspR9I | CCNGG | 5 cut(s) | 47, 55, 428, 482, 1444 |
| MunI | CAATTG | 2 cut(s) | 690, 1711 |
| Mva1269I | GAATGC | 1 cut(s) | 1185 |
| MvaI | CCWGG | 2 cut(s) | 55, 482 |
| NciI | CCSGG | 3 cut(s) | 47, 428, 1444 |
| NcoI | CCATGG | 3 cut(s) | 1116, 1227, 1610 |
| NdeI | CATATG | 1 cut(s) | 677 |
| NdeII | GATC | 4 cut(s) | 969, 1358, 1392, 1692 |
| NlaIV | GGNNCC | 7 cut(s) | 193, 487, 734, 942, 1419, 1441, 1767 |
| NmeAIII | GCCGAG | 1 cut(s) | 249 |
| NmuCI | GTSAC | 6 cut(s) | 175, 229, 346, 622, 1101, 1573 |
| NotI | GCGGCCGC | 1 cut(s) | 108 |
| NsiI | ATGCAT | 1 cut(s) | 1789 |
| NspI | RCATGY | 1 cut(s) | 832 |
| OliI | CACNNNNGTG | 1 cut(s) | 1580 |
| PaqCI | CACCTGC | 1 cut(s) | 1162 |
| PasI | CCCWGGG | 1 cut(s) | 481 |
| PceI | AGGCCT | 1 cut(s) | 1451 |
| PciI | ACATGT | 1 cut(s) | 828 |
| PctI | GAATGC | 1 cut(s) | 1185 |
| PfeI | GAWTC | 1 cut(s) | 118 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 340 |
| PfoI | TCCNGGA | 1 cut(s) | 45 |
| PleI | GAGTC | 3 cut(s) | 547, 760, 861 |
| PpsI | GAGTC | 3 cut(s) | 547, 760, 861 |
| PscI | ACATGT | 1 cut(s) | 828 |
| Psp1406I | AACGTT | 1 cut(s) | 846 |
| Psp6I | CCWGG | 2 cut(s) | 53, 480 |
| PspFI | CCCAGC | 1 cut(s) | 377 |
| PspGI | CCWGG | 2 cut(s) | 53, 480 |
| PspN4I | GGNNCC | 7 cut(s) | 193, 487, 734, 942, 1419, 1441, 1767 |
| PspPI | GGNCC | 6 cut(s) | 67, 84, 1047, 1120, 1417, 1440 |
| PsuI | RGATCY | 1 cut(s) | 1392 |
| RsaI | GTAC | 5 cut(s) | 13, 247, 734, 842, 961 |
| RsaNI | GTAC | 5 cut(s) | 12, 246, 733, 841, 960 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1058, 1580 |
| SaqAI | TTAA | 1 cut(s) | 168 |
| Sau3AI | GATC | 4 cut(s) | 969, 1358, 1392, 1692 |
| Sau96I | GGNCC | 6 cut(s) | 67, 84, 1047, 1120, 1417, 1440 |
| SchI | GAGTC | 3 cut(s) | 548, 760, 861 |
| ScrFI | CCNGG | 5 cut(s) | 47, 55, 428, 482, 1444 |
| SduI | GDGCHC | 6 cut(s) | 488, 1496, 1520, 1538, 1602, 1783 |
| SfaNI | GCATC | 2 cut(s) | 40, 432 |
| SfcI | CTRYAG | 1 cut(s) | 1593 |
| SgrAI | CRCCGGYG | 1 cut(s) | 488 |
| SinI | GGWCC | 4 cut(s) | 84, 1120, 1417, 1440 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1058, 1580 |
| SmlI | CTYRAG | 2 cut(s) | 869, 1531 |
| SmoI | CTYRAG | 2 cut(s) | 869, 1531 |
| SseBI | AGGCCT | 1 cut(s) | 1451 |
| SspI | AATATT | 1 cut(s) | 354 |
| SspMI | CTAG | 4 cut(s) | 122, 155, 1244, 1292 |
| StuI | AGGCCT | 1 cut(s) | 1451 |
| StyD4I | CCNGG | 5 cut(s) | 45, 53, 426, 480, 1442 |
| StyI | CCWWGG | 4 cut(s) | 1116, 1227, 1610, 1633 |
| TaaI | ACNGT | 7 cut(s) | 229, 628, 732, 737, 1072, 1198, 1425 |
| TaiI | ACGT | 1 cut(s) | 849 |
| TaqI | TCGA | 1 cut(s) | 503 |
| TaqII | GACCGA | 1 cut(s) | 1388 |
| TatI | WGTACW | 1 cut(s) | 840 |
| TauI | GCSGC | 8 cut(s) | 72, 99, 110, 113, 438, 495, 620, 794 |
| TfiI | GAWTC | 1 cut(s) | 118 |
| Tru1I | TTAA | 1 cut(s) | 168 |
| Tru9I | TTAA | 1 cut(s) | 168 |
| TscAI | CASTG | 2 cut(s) | 1104, 1404 |
| TseFI | GTSAC | 6 cut(s) | 175, 229, 346, 622, 1101, 1573 |
| TseI | GCWGC | 6 cut(s) | 756, 929, 1182, 1319, 1322, 1468 |
| Tsp45I | GTSAC | 6 cut(s) | 175, 229, 346, 622, 1101, 1573 |
| TspDTI | ATGAA | 4 cut(s) | 244, 586, 1520, 1533 |
| TspGWI | ACGGA | 1 cut(s) | 902 |
| TspRI | CASTG | 2 cut(s) | 1104, 1404 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 340 |
| VpaK11BI | GGWCC | 4 cut(s) | 84, 1120, 1417, 1440 |
| XapI | RAATTY | 1 cut(s) | 1684 |
| XceI | RCATGY | 1 cut(s) | 832 |
| XmiI | GTMKAC | 3 cut(s) | 636, 1074, 1206 |
| XspI | CTAG | 4 cut(s) | 122, 155, 1244, 1292 |
| Zsp2I | ATGCAT | 1 cut(s) | 1789 |