Rh7DG207200

Nitrate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0011153
Physical Location & Seq
Reverse (-)
19724069 .. 19724890
822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG207200.1

Sequence Viewer

Length: 822 bp
ATGATCATAAACAAGTGGAGTTTATCAACCCTAACTGATATTGAAGAAGTCAAAATGATTATCAGAATGCTACCAATTTGGGCCACCACCATATTGTTTTGGACAGTCTATGCTCAAATGACCACATTCTCAGTGTCACAAGCAACCTCCATGGACCGTAAAATTGGTAGTTCATTTCAGATCCCACCTGCCTCCCTCACTGTTTTCTTTGTAGGCAGCATTCTCTTGACTGTCCCAGTTTATGATAGAATCATAGTCCCAGTGGCAAGAAAGCTACTCAAAAATCCCCAAGGACTAACCCCATTGCAGAGAATTGGGGTTGGTCTAGTGCTCTCAATCTTTGCCATGGTGGCAGCGGCACTCACGGAGCTAAAGCGCTTGAGAGCCGCACGATCTCATGGGCTGACGGATGATCCGACAGCCGAGATCCCGTTAAGCGTCTTCTGGCTGGTCCCACAATTTTTCTTTGTAGGATCAGGAGAGGCCTTCACTTACATTGGTCAACTTGACTTTTTTCTCAGGGAGTGCCCAAAGGGGATGAAGACTATGAGCACAGGACTGTTTTTGAGCACCCTTTCACTAGGGTTCTTCTTCAGCTCGCTTTTGGTGACCATAGTGCATAAGGTGACTGGGGATAGGAAGCCATGGCTTGCAGATAATCTTAATCAGGGAAAACTTTATGATTTTTACTGGCTTTTGGCAATTTTGAGTGCTTTGAATATGCTGATTTATTTGGTTTGTGCCAAATGGTATGTGTACAAGGACAAGAGGCTTGCTGAGGAGGGTATGGAATTGGAGGAAGTAGAGATTTGTGCCCATTAA

Protein Analysis

273

Amino Acids

30.81

Weight (kDa)

8.69

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 3 - 214 1.6e-59 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011153)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12110
fragaria_vesca FvH4_5g00150 FvH4_5g00150 FvH4_5g00150
malus_domestica MD04G1086300.v1.1
prunus_persica Prupe.5G073600_v2.0.a1 Prupe.5G073600_v2.0.a1
pyrus_communis pycom04g07780 pycom06g06190
rosa_chinensis RchiOBHm_Chr7g0202731
rosa_laevigata RLG00000003575
rosa_multiflora Rmu_sc0002158.1_g000012 Rmu_sc0002590.1_g000002
rosa_roxburghii Rroxscaffold_3G00254330
rosa_rugosa Rorug07G0073000 Rorug07G0073000
rosa_samantha Rh7AG200300 Rh7BG200900 Rh7DG207200
rosa_wichuraiana Rw7G017530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 196
Acc36I ACCTGC 1 cut(s) 196
AciI CCGC 2 cut(s) 356, 387
AclWI GGATC 4 cut(s) 175, 407, 421, 481
AcuI CTGAAG 1 cut(s) 577
AfaI GTAC 1 cut(s) 758
AfeI AGCGCT 1 cut(s) 377
AgsI TTSAA 2 cut(s) 44, 718
AluBI AGCT 3 cut(s) 274, 370, 597
AluI AGCT 3 cut(s) 274, 370, 597
Alw21I GWGCWC 3 cut(s) 333, 554, 572
AlwI GGATC 4 cut(s) 175, 407, 421, 481
Aor51HI AGCGCT 1 cut(s) 377
AoxI GGCC 2 cut(s) 81, 483
ApeKI GCWGC 2 cut(s) 216, 353
AspLEI GCGC 1 cut(s) 378
AspS9I GGNCC 3 cut(s) 81, 154, 451
AsuHPI GGTGA 2 cut(s) 619, 637
AvaII GGWCC 2 cut(s) 154, 451
BaeGI GKGCMC 2 cut(s) 530, 817
BbsI GAAGAC 2 cut(s) 433, 548
Bbv12I GWGCWC 3 cut(s) 333, 554, 572
BbvCI CCTCAGC 1 cut(s) 777
BbvI GCAGC 2 cut(s) 228, 365
BclI TGATCA 1 cut(s) 3
BfaI CTAG 2 cut(s) 326, 581
BfoI RGCGCY 1 cut(s) 379
BfuAI ACCTGC 1 cut(s) 196
BglI GCCNNNNNGGC 1 cut(s) 350
BisI GCNGC 4 cut(s) 217, 354, 357, 387
BlsI GCNGC 4 cut(s) 218, 355, 358, 388
Bme18I GGWCC 2 cut(s) 154, 451
BmgT120I GGNCC 3 cut(s) 81, 154, 451
BmiI GGNNCC 1 cut(s) 453
BmrI ACTGGG 3 cut(s) 230, 254, 639
BmuI ACTGGG 3 cut(s) 230, 254, 639
BpiI GAAGAC 2 cut(s) 433, 548
Bpu10I CCTNAGC 1 cut(s) 777
BpuEI CTTGAG 1 cut(s) 400
BsaJI CCNNGG 4 cut(s) 150, 289, 345, 644
Bse1I ACTGG 4 cut(s) 236, 260, 634, 695
Bse3DI GCAATG 1 cut(s) 302
BseDI CCNNGG 4 cut(s) 150, 289, 345, 644
BseGI GGATG 2 cut(s) 415, 543
BseMI GCAATG 1 cut(s) 302
BseMII CTCAG 3 cut(s) 144, 532, 768
BseNI ACTGG 4 cut(s) 236, 260, 634, 695
BseRI GAGGAG 1 cut(s) 794
BseSI GKGCMC 2 cut(s) 530, 817
BseXI GCAGC 2 cut(s) 228, 365
BshFI GGCC 2 cut(s) 83, 485
BsiHKAI GWGCWC 3 cut(s) 333, 554, 572
BslFI GGGAC 3 cut(s) 218, 242, 437
BsmFI GGGAC 3 cut(s) 218, 242, 437
BsmI GAATGC 2 cut(s) 72, 219
BsnI GGCC 2 cut(s) 83, 485
Bsp1286I GDGCHC 5 cut(s) 333, 530, 554, 572, 817
Bsp1407I TGTACA 1 cut(s) 756
Bsp143I GATC 6 cut(s) 3, 180, 392, 412, 426, 473
Bsp19I CCATGG 3 cut(s) 150, 345, 644
BspACI CCGC 2 cut(s) 356, 387
BspANI GGCC 2 cut(s) 83, 485
BspCNI CTCAG 3 cut(s) 143, 531, 769
BspLI GGNNCC 1 cut(s) 453
BspMI ACCTGC 1 cut(s) 196
BspPI GGATC 4 cut(s) 175, 407, 421, 481
BsrDI GCAATG 1 cut(s) 302
BsrGI TGTACA 1 cut(s) 756
BsrI ACTGG 4 cut(s) 236, 260, 634, 695
BssECI CCNNGG 4 cut(s) 150, 289, 345, 644
BssMI GATC 6 cut(s) 3, 180, 392, 412, 426, 473
BssT1I CCWWGG 4 cut(s) 150, 289, 345, 644
Bst4CI ACNGT 5 cut(s) 106, 158, 202, 232, 561
BstAUI TGTACA 1 cut(s) 756
BstC8I GCNNGC 3 cut(s) 599, 651, 774
BstDEI CTNAG 3 cut(s) 130, 518, 777
BstDSI CCRYGG 3 cut(s) 150, 345, 644
BstEII GGTNACC 1 cut(s) 607
BstF5I GGATG 2 cut(s) 415, 543
BstH2I RGCGCY 1 cut(s) 379
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 6 cut(s) 6, 183, 395, 415, 429, 476
BstMBI GATC 6 cut(s) 3, 180, 392, 412, 426, 473
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstPI GGTNACC 1 cut(s) 607
BstSLI GKGCMC 2 cut(s) 530, 817
BstV1I GCAGC 2 cut(s) 228, 365
BstV2I GAAGAC 2 cut(s) 433, 548
BstX2I RGATCY 2 cut(s) 180, 426
BstYI RGATCY 2 cut(s) 180, 426
BsuRI GGCC 2 cut(s) 83, 485
BtgI CCRYGG 3 cut(s) 150, 345, 644
BtsCI GGATG 2 cut(s) 415, 543
BtsIMutI CAGTG 3 cut(s) 138, 198, 267
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 3 cut(s) 599, 651, 774
CfoI GCGC 1 cut(s) 378
Cfr13I GGNCC 3 cut(s) 81, 154, 451
CseI GACGC 1 cut(s) 427
Csp6I GTAC 1 cut(s) 757
CviAII CATG 4 cut(s) 151, 346, 398, 645
CviQI GTAC 1 cut(s) 757
DdeI CTNAG 3 cut(s) 130, 518, 777
DpnI GATC 6 cut(s) 5, 182, 394, 414, 428, 475
DpnII GATC 6 cut(s) 3, 180, 392, 412, 426, 473
Eco130I CCWWGG 4 cut(s) 150, 289, 345, 644
Eco147I AGGCCT 1 cut(s) 485
Eco47I GGWCC 2 cut(s) 154, 451
Eco47III AGCGCT 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 577
Eco91I GGTNACC 1 cut(s) 607
EcoO65I GGTNACC 1 cut(s) 607
EcoT14I CCWWGG 4 cut(s) 150, 289, 345, 644
ErhI CCWWGG 4 cut(s) 150, 289, 345, 644
FaeI CATG 4 cut(s) 154, 349, 401, 648
FaqI GGGAC 3 cut(s) 218, 242, 437
FatI CATG 4 cut(s) 150, 345, 397, 644
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 4 cut(s) 217, 354, 357, 387
FokI GGATG 2 cut(s) 422, 550
Fsp4HI GCNGC 4 cut(s) 217, 354, 357, 387
FspBI CTAG 2 cut(s) 326, 581
GlaI GCGC 1 cut(s) 377
GluI GCNGC 4 cut(s) 217, 354, 357, 387
HaeII RGCGCY 1 cut(s) 379
HaeIII GGCC 2 cut(s) 83, 485
HgaI GACGC 1 cut(s) 427
HhaI GCGC 1 cut(s) 378
Hin1II CATG 4 cut(s) 154, 349, 401, 648
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HincII GTYRAC 1 cut(s) 503
HindII GTYRAC 1 cut(s) 503
HinfI GANTC 1 cut(s) 249
HphI GGTGA 2 cut(s) 619, 637
Hpy166II GTNNAC 2 cut(s) 503, 757
Hpy188I TCNGA 3 cut(s) 65, 180, 417
Hpy188III TCNNGA 2 cut(s) 226, 477
Hpy8I GTNNAC 2 cut(s) 503, 757
HpyAV CCTTC 1 cut(s) 496
HpyCH4III ACNGT 5 cut(s) 106, 158, 202, 232, 561
HpyCH4V TGCA 3 cut(s) 307, 619, 653
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 3 cut(s) 130, 518, 777
Hsp92II CATG 4 cut(s) 154, 349, 401, 648
HspAI GCGC 1 cut(s) 376
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 6 cut(s) 3, 180, 392, 412, 426, 473
LmnI GCTCC 1 cut(s) 367
Lsp1109I GCAGC 2 cut(s) 228, 365
MaeI CTAG 2 cut(s) 326, 581
MaeIII GTNAC 3 cut(s) 135, 607, 625
MalI GATC 6 cut(s) 5, 182, 394, 414, 428, 475
MboI GATC 6 cut(s) 3, 180, 392, 412, 426, 473
MboII GAAGA 5 cut(s) 56, 433, 553, 580, 583
MflI RGATCY 2 cut(s) 180, 426
MhlI GDGCHC 5 cut(s) 333, 530, 554, 572, 817
MluCI AATT 6 cut(s) 75, 162, 312, 458, 702, 791
MmeI TCCRAC 1 cut(s) 440
MnlI CCTC 8 cut(s) 157, 202, 206, 475, 762, 772, 775, 790
MseI TTAA 3 cut(s) 434, 663, 820
MspA1I CMGCKG 1 cut(s) 356
Mva1269I GAATGC 2 cut(s) 72, 219
MwoI GCNNNNNNNGC 1 cut(s) 350
NcoI CCATGG 3 cut(s) 150, 345, 644
NdeII GATC 6 cut(s) 3, 180, 392, 412, 426, 473
NlaIII CATG 4 cut(s) 154, 349, 401, 648
NlaIV GGNNCC 1 cut(s) 453
NmeAIII GCCGAG 1 cut(s) 448
NmuCI GTSAC 3 cut(s) 135, 607, 625
PaqCI CACCTGC 1 cut(s) 196
PceI AGGCCT 1 cut(s) 485
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PctI GAATGC 2 cut(s) 72, 219
PfeI GAWTC 1 cut(s) 249
PkrI GCNGC 4 cut(s) 218, 355, 358, 388
PspEI GGTNACC 1 cut(s) 607
PspN4I GGNNCC 1 cut(s) 453
PspPI GGNCC 3 cut(s) 81, 154, 451
PsuI RGATCY 2 cut(s) 180, 426
RsaI GTAC 1 cut(s) 758
RsaNI GTAC 1 cut(s) 757
SaqAI TTAA 3 cut(s) 434, 663, 820
SatI GCNGC 4 cut(s) 217, 354, 357, 387
Sau3AI GATC 6 cut(s) 3, 180, 392, 412, 426, 473
Sau96I GGNCC 3 cut(s) 81, 154, 451
SduI GDGCHC 5 cut(s) 333, 530, 554, 572, 817
SetI ASST 6 cut(s) 149, 190, 276, 372, 599, 627
SinI GGWCC 2 cut(s) 154, 451
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
Sse9I AATT 6 cut(s) 75, 162, 312, 458, 702, 791
SseBI AGGCCT 1 cut(s) 485
SsiI CCGC 2 cut(s) 356, 387
SspMI CTAG 2 cut(s) 326, 581
StuI AGGCCT 1 cut(s) 485
StyI CCWWGG 4 cut(s) 150, 289, 345, 644
TaaI ACNGT 5 cut(s) 106, 158, 202, 232, 561
TasI AATT 6 cut(s) 75, 162, 312, 458, 702, 791
TatI WGTACW 1 cut(s) 756
TauI GCSGC 2 cut(s) 359, 389
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 3 cut(s) 434, 663, 820
Tru9I TTAA 3 cut(s) 434, 663, 820
TscAI CASTG 3 cut(s) 138, 205, 267
TseFI GTSAC 3 cut(s) 135, 607, 625
TseI GCWGC 2 cut(s) 216, 353
Tsp45I GTSAC 3 cut(s) 135, 607, 625
TspDTI ATGAA 2 cut(s) 162, 554
TspGWI ACGGA 2 cut(s) 380, 422
TspRI CASTG 3 cut(s) 138, 205, 267
VpaK11BI GGWCC 2 cut(s) 154, 451
XspI CTAG 2 cut(s) 326, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.