Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0011153

Physical Location & Seq

Genomic Coordinates Reverse (-)

8660739 .. 8667271

Gene Structure 6533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g07780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAACTGCCGACGGACTTGACGTTGTTATACAACGTTGATGACATAGATGATGGAAAGAAGAAGAAGAAGAAGCAGGAGTTGCCTCATAGCAACCAGTTCCGTTTCTTGGATAAGGCAGCAATCAAGGACCCAAAAACTGAAGGTGGTAAAACAGCGATCGTAAACAAGTGGAGTTTATCAATCCTAACCGATGTTGAAGAAGTAAAAATGATCATCAGAATGCTACCAATCTGGGCCACTACCATCATGTTTTGGACAATTTATGCCCAAATGACCACATTCTCAGTGTCCCAAGCAACCACCATGAACCGCCACATCAGAAAATTGTTCCAAATTCCTCCGGCATCCCTCACTGCTTTCTTTGTAGGCAGCATTCTGTTAACTGTCCCGGTTTACGACCGGATTATAGTCCCAGTTGCAAGAAACTTACTAAACAACCCTCAAGGACTAACCCCATTGCAGCGCATAGGGGTTGGTTTGGTATTCTCAATATTTTCCATGGTTGCAGCAGCACTTACAGAAGTCAAGCGTATGAATGCAGCAAGAGCACATGGTTTGACAGGCAATCCAAAGGCTGAGATCCCACTGAGTGTTTTTTGGCTGGTCCCACAGTTCTTCTTTGTGGGGTCAGGAGAAGCCTTCATGTACATTGGGCAGCTGGACTTCTTCCTCAGGGAGTGCCCGAAAGGAATGAAGACTATGAGCACAGGGCTGTTTCTGAGCACCCTCTCATTAGGGTTTTTCGTGAGCTCACTGTTGGTGAGTTTAGTGCACAAGGTGACAGGGGACAGGAAACCATGGTTTGCAAACAATATCAACCAAGGAAAGCTTTATGATTTCTATTGGCTTTTGGCGCTTTTGAGTGCTTTGAATTTGGTGGTCTATTTGTTTTGTGCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0034220 GO:0042221 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0071944 GO:0098656 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

302

Amino Acids

33.87

Weight (kDa)

9.58

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12110
fragaria_vesca	FvH4_5g00150 FvH4_5g00150 FvH4_5g00150
malus_domestica	MD04G1086300.v1.1
prunus_persica	Prupe.5G073600_v2.0.a1 Prupe.5G073600_v2.0.a1
pyrus_communis	pycom04g07780 pycom06g06190
rosa_chinensis	RchiOBHm_Chr7g0202731
rosa_laevigata	RLG00000003575
rosa_multiflora	Rmu_sc0002158.1_g000012 Rmu_sc0002590.1_g000002
rosa_roxburghii	Rroxscaffold_3G00254330
rosa_rugosa	Rorug07G0073000 Rorug07G0073000
rosa_samantha	Rh7AG200300 Rh7BG200900 Rh7DG207200
rosa_wichuraiana	Rw7G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	313
AclI	AACGTT	1 cut(s)	36
AclWI	GGATC	1 cut(s)	577
AcsI	RAATTY	2 cut(s)	336, 874
AcuI	CTGAAG	1 cut(s)	162
AdeI	CACNNNGTG	2 cut(s)	593, 781
AfaI	GTAC	1 cut(s)	650
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	2 cut(s)	200, 874
AluBI	AGCT	3 cut(s)	661, 753, 832
AluI	AGCT	3 cut(s)	661, 753, 832
Alw21I	GWGCWC	5 cut(s)	553, 710, 728, 755, 777
Alw44I	GTGCAC	1 cut(s)	773
AlwI	GGATC	1 cut(s)	577
AoxI	GGCC	1 cut(s)	237
ApaLI	GTGCAC	1 cut(s)	773
ApeKI	GCWGC	7 cut(s)	119, 372, 463, 509, 512, 542, 658
ApoI	RAATTY	2 cut(s)	336, 874
AspLEI	GCGC	2 cut(s)	468, 859
AspS9I	GGNCC	3 cut(s)	130, 237, 607
AsuC2I	CCSGG	1 cut(s)	392
AsuHPI	GGTGA	2 cut(s)	775, 793
AvaII	GGWCC	2 cut(s)	130, 607
AxyI	CCTNAGG	1 cut(s)	674
BaeGI	GKGCMC	2 cut(s)	686, 777
BanII	GRGCYC	1 cut(s)	755
BbsI	GAAGAC	1 cut(s)	704
Bbv12I	GWGCWC	5 cut(s)	553, 710, 728, 755, 777
BbvI	GCAGC	7 cut(s)	131, 384, 475, 521, 524, 554, 670
BccI	CCATC	2 cut(s)	47, 254
BclI	TGATCA	1 cut(s)	213
BcnI	CCSGG	1 cut(s)	392
BfoI	RGCGCY	1 cut(s)	860
BisI	GCNGC	7 cut(s)	120, 373, 464, 510, 513, 543, 659
BlsI	GCNGC	7 cut(s)	121, 374, 465, 511, 514, 544, 660
Bme1390I	CCNGG	1 cut(s)	392
Bme18I	GGWCC	2 cut(s)	130, 607
BmgT120I	GGNCC	3 cut(s)	130, 237, 607
BmiI	GGNNCC	2 cut(s)	132, 609
BmrFI	CCNGG	1 cut(s)	392
BmrI	ACTGGG	1 cut(s)	410
BmsI	GCATC	1 cut(s)	356
BmuI	ACTGGG	1 cut(s)	410
BpiI	GAAGAC	1 cut(s)	704
BpuEI	CTTGAG	1 cut(s)	429
BpuMI	CCSGG	1 cut(s)	392
BsaJI	CCNNGG	3 cut(s)	501, 800, 823
BsaWI	WCCGGW	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse1I	ACTGG	2 cut(s)	97, 416
Bse21I	CCTNAGG	1 cut(s)	674
Bse3DI	GCAATG	1 cut(s)	458
BseDI	CCNNGG	3 cut(s)	501, 800, 823
BseGI	GGATG	1 cut(s)	347
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMI	GCAATG	1 cut(s)	458
BseMII	CTCAG	5 cut(s)	300, 570, 581, 688, 713
BseNI	ACTGG	2 cut(s)	97, 416
BseSI	GKGCMC	2 cut(s)	686, 777
BseXI	GCAGC	7 cut(s)	131, 384, 475, 521, 524, 554, 670
Bsh1285I	CGRYCG	2 cut(s)	162, 403
BshFI	GGCC	1 cut(s)	239
BsiEI	CGRYCG	2 cut(s)	162, 403
BsiHKAI	GWGCWC	5 cut(s)	553, 710, 728, 755, 777
BsiSI	CCGG	3 cut(s)	344, 392, 403
BslFI	GGGAC	5 cut(s)	277, 374, 398, 593, 803
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmFI	GGGAC	5 cut(s)	277, 374, 398, 593, 803
BsmI	GAATGC	3 cut(s)	228, 375, 544
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	6 cut(s)	553, 686, 710, 728, 755, 777
Bsp1407I	TGTACA	1 cut(s)	648
Bsp143I	GATC	3 cut(s)	159, 213, 582
Bsp19I	CCATGG	2 cut(s)	501, 800
BspACI	CCGC	1 cut(s)	313
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	5 cut(s)	299, 571, 582, 687, 714
BspLI	GGNNCC	2 cut(s)	132, 609
BspPI	GGATC	1 cut(s)	577
BsrDI	GCAATG	1 cut(s)	458
BsrGI	TGTACA	1 cut(s)	648
BsrI	ACTGG	2 cut(s)	97, 416
BssECI	CCNNGG	3 cut(s)	501, 800, 823
BssMI	GATC	3 cut(s)	159, 213, 582
BssT1I	CCWWGG	3 cut(s)	501, 800, 823
Bst4CI	ACNGT	3 cut(s)	388, 615, 759
BstAPI	GCANNNNNTGC	1 cut(s)	82
BstAUI	TGTACA	1 cut(s)	648
BstDEI	CTNAG	5 cut(s)	286, 579, 590, 674, 722
BstDSI	CCRYGG	2 cut(s)	501, 800
BstF5I	GGATG	1 cut(s)	347
BstH2I	RGCGCY	1 cut(s)	860
BstHHI	GCGC	2 cut(s)	468, 859
BstKTI	GATC	3 cut(s)	162, 216, 585
BstMBI	GATC	3 cut(s)	159, 213, 582
BstMCI	CGRYCG	2 cut(s)	162, 403
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 548, 856
BstSCI	CCNGG	1 cut(s)	390
BstSLI	GKGCMC	2 cut(s)	686, 777
BstV1I	GCAGC	7 cut(s)	131, 384, 475, 521, 524, 554, 670
BstV2I	GAAGAC	1 cut(s)	704
BstX2I	RGATCY	1 cut(s)	582
BstYI	RGATCY	1 cut(s)	582
Bsu36I	CCTNAGG	1 cut(s)	674
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	2 cut(s)	501, 800
BtsCI	GGATG	1 cut(s)	347
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	4 cut(s)	294, 354, 587, 755
CfoI	GCGC	2 cut(s)	468, 859
Cfr13I	GGNCC	3 cut(s)	130, 237, 607
Csp6I	GTAC	1 cut(s)	649
CviAII	CATG	6 cut(s)	250, 307, 502, 554, 646, 801
CviJI	RGCY	9 cut(s)	239, 578, 604, 641, 661, 715, 753, 832, 850
CviKI_1	RGCY	9 cut(s)	239, 578, 604, 641, 661, 715, 753, 832, 850
CviQI	GTAC	1 cut(s)	649
DdeI	CTNAG	5 cut(s)	286, 579, 590, 674, 722
DpnI	GATC	3 cut(s)	161, 215, 584
DpnII	GATC	3 cut(s)	159, 213, 582
DraIII	CACNNNGTG	2 cut(s)	593, 781
Ecl136II	GAGCTC	1 cut(s)	753
Eco130I	CCWWGG	3 cut(s)	501, 800, 823
Eco24I	GRGCYC	1 cut(s)	755
Eco47I	GGWCC	2 cut(s)	130, 607
Eco53kI	GAGCTC	1 cut(s)	753
Eco57I	CTGAAG	1 cut(s)	162
Eco81I	CCTNAGG	1 cut(s)	674
EcoICRI	GAGCTC	1 cut(s)	753
EcoO109I	RGGNCCY	1 cut(s)	130
EcoT14I	CCWWGG	3 cut(s)	501, 800, 823
EcoT38I	GRGCYC	1 cut(s)	755
ErhI	CCWWGG	3 cut(s)	501, 800, 823
FaeI	CATG	6 cut(s)	253, 310, 505, 557, 649, 804
FalI	AAGNNNNNCTT	2 cut(s)	816, 848
FaqI	GGGAC	5 cut(s)	277, 374, 398, 593, 803
FatI	CATG	6 cut(s)	249, 306, 501, 553, 645, 800
FbaI	TGATCA	1 cut(s)	213
Fnu4HI	GCNGC	7 cut(s)	120, 373, 464, 510, 513, 543, 659
FokI	GGATG	1 cut(s)	334
FriOI	GRGCYC	1 cut(s)	755
Fsp4HI	GCNGC	7 cut(s)	120, 373, 464, 510, 513, 543, 659
GlaI	GCGC	2 cut(s)	467, 858
GluI	GCNGC	7 cut(s)	120, 373, 464, 510, 513, 543, 659
HaeII	RGCGCY	1 cut(s)	860
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	3 cut(s)	344, 392, 403
HhaI	GCGC	2 cut(s)	468, 859
Hin1II	CATG	6 cut(s)	253, 310, 505, 557, 649, 804
Hin6I	GCGC	2 cut(s)	466, 857
HinP1I	GCGC	2 cut(s)	466, 857
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HindIII	AAGCTT	1 cut(s)	830
HpaI	GTTAAC	1 cut(s)	384
HpaII	CCGG	3 cut(s)	344, 392, 403
HphI	GGTGA	2 cut(s)	775, 793
Hpy166II	GTNNAC	4 cut(s)	166, 384, 397, 775
Hpy188I	TCNGA	3 cut(s)	221, 323, 723
Hpy188III	TCNNGA	2 cut(s)	633, 748
Hpy8I	GTNNAC	4 cut(s)	166, 384, 397, 775
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	137, 652
HpyCH4III	ACNGT	3 cut(s)	388, 615, 759
HpyCH4IV	ACGT	2 cut(s)	23, 36
HpyCH4V	TGCA	6 cut(s)	422, 463, 509, 542, 775, 809
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 548, 856
HpyF3I	CTNAG	5 cut(s)	286, 579, 590, 674, 722
HpySE526I	ACGT	2 cut(s)	23, 36
Hsp92II	CATG	6 cut(s)	253, 310, 505, 557, 649, 804
HspAI	GCGC	2 cut(s)	466, 857
Ksp22I	TGATCA	1 cut(s)	213
KspAI	GTTAAC	1 cut(s)	384
Kzo9I	GATC	3 cut(s)	159, 213, 582
Lsp1109I	GCAGC	7 cut(s)	131, 384, 475, 521, 524, 554, 670
LweI	GCATC	1 cut(s)	356
MaeII	ACGT	2 cut(s)	23, 36
MaeIII	GTNAC	1 cut(s)	781
MalI	GATC	3 cut(s)	161, 215, 584
MboI	GATC	3 cut(s)	159, 213, 582
MboII	GAAGA	8 cut(s)	73, 76, 79, 82, 212, 610, 661, 709
MflI	RGATCY	1 cut(s)	582
MhlI	GDGCHC	6 cut(s)	553, 686, 710, 728, 755, 777
MluCI	AATT	5 cut(s)	261, 326, 336, 874, 901
MnlI	CCTC	6 cut(s)	96, 351, 362, 453, 683, 740
MseI	TTAA	1 cut(s)	383
MslI	CAYNNNNRTG	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	661
MspI	CCGG	3 cut(s)	344, 392, 403
MspR9I	CCNGG	1 cut(s)	392
Mva1269I	GAATGC	3 cut(s)	228, 375, 544
MwoI	GCNNNNNNNGC	3 cut(s)	82, 548, 856
NciI	CCSGG	1 cut(s)	392
NcoI	CCATGG	2 cut(s)	501, 800
NdeII	GATC	3 cut(s)	159, 213, 582
NlaIII	CATG	6 cut(s)	253, 310, 505, 557, 649, 804
NlaIV	GGNNCC	2 cut(s)	132, 609
NmuCI	GTSAC	1 cut(s)	781
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PctI	GAATGC	3 cut(s)	228, 375, 544
PkrI	GCNGC	7 cut(s)	121, 374, 465, 511, 514, 544, 660
Ple19I	CGATCG	1 cut(s)	162
PpuMI	RGGWCCY	1 cut(s)	130
Psp124BI	GAGCTC	1 cut(s)	755
Psp1406I	AACGTT	1 cut(s)	36
Psp5II	RGGWCCY	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	132, 609
PspPI	GGNCC	3 cut(s)	130, 237, 607
PspPPI	RGGWCCY	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	582
PvuI	CGATCG	1 cut(s)	162
PvuII	CAGCTG	1 cut(s)	661
RsaI	GTAC	1 cut(s)	650
RsaNI	GTAC	1 cut(s)	649
RseI	CAYNNNNRTG	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	755
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	7 cut(s)	120, 373, 464, 510, 513, 543, 659
Sau3AI	GATC	3 cut(s)	159, 213, 582
Sau96I	GGNCC	3 cut(s)	130, 237, 607
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	6 cut(s)	553, 686, 710, 728, 755, 777
SetI	ASST	7 cut(s)	26, 39, 148, 663, 755, 783, 834
SfaNI	GCATC	1 cut(s)	356
SinI	GGWCC	2 cut(s)	130, 607
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	444
SmoI	CTYRAG	1 cut(s)	444
Sse9I	AATT	5 cut(s)	261, 326, 336, 874, 901
SsiI	CCGC	1 cut(s)	313
SspI	AATATT	1 cut(s)	495
SstI	GAGCTC	1 cut(s)	755
StyD4I	CCNGG	1 cut(s)	390
StyI	CCWWGG	3 cut(s)	501, 800, 823
TaaI	ACNGT	3 cut(s)	388, 615, 759
TaiI	ACGT	2 cut(s)	26, 39
TasI	AATT	5 cut(s)	261, 326, 336, 874, 901
TatI	WGTACW	1 cut(s)	648
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TscAI	CASTG	4 cut(s)	294, 361, 594, 762
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	7 cut(s)	119, 372, 463, 509, 512, 542, 658
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	4 cut(s)	323, 551, 634, 710
TspGWI	ACGGA	2 cut(s)	29, 92
TspRI	CASTG	4 cut(s)	294, 361, 594, 762
VneI	GTGCAC	1 cut(s)	773
VpaK11BI	GGWCC	2 cut(s)	130, 607
XapI	RAATTY	2 cut(s)	336, 874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.