MD04G1179400.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0022398
Physical Location & Seq
Reverse (-)
27044977 .. 27045522
546 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1179400.v1.1.491

Sequence Viewer

Length: 546 bp
ATGCTGAAACAAAAGCCGGTACTCGCCTCCCTGGCAGCGATCGTAGTTCTTGTGGCCATAATTTTTTTTATAATGCTGATCCTAGGGCTTACGAATTACAAGCCAAAGGACCCCATAACCCTAGTGGATGCACTGGTCTTAAGAAACCTAGAAGTTTGTCACCATGCGCCTAAACTCATCACCATGGTAATGTCTTTCTCTATCAAGAACGGCAACAAGGTGGCCTTCAAGCCCTCCAAGGGCACTGCAATCTTGTTCTACAAGGGCGTGAACGTCGGTGAGGCTGATATAGAGGTAGGAAAGGTAGCGCCGGGAGCCACCATAAGCACGAATGTTACGCTCACCGCTTTGGCTGATCGTTTGATGGGCAACCCCGCGGTTAGTTATGATATGTTGGCGGGTAGCATGCCTTTCAACACTTTCACCGAAGTCCCCGGCAAAGTGAAGATCTTTGGAATGGCTAAGGTTGCTGTGACCTCCACCAACTTGTGCGGTTTTGACATCGATATCCGTAGCAAGACTGTTGGGGACTATAGCTGCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

182

Amino Acids

19.33

Weight (kDa)

9.28

Isoelectric Point (pI)

26.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022398)

Species Orthologous Gene IDs
malus_domestica MD04G1179400.v1.1 MD12G1194500.v1.1
prunus_persica Prupe.6G299300_v2.0.a1 Prupe.6G299400_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 71
AccII CGCG 1 cut(s) 377
AciI CCGC 5 cut(s) 345, 375, 377, 398, 492
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 1 cut(s) 54
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 239
AflII CTTAAG 1 cut(s) 139
AgsI TTSAA 2 cut(s) 229, 415
AjnI CCWGG 1 cut(s) 30
AluBI AGCT 1 cut(s) 537
AluI AGCT 1 cut(s) 537
AlwI GGATC 1 cut(s) 73
AoxI GGCC 2 cut(s) 54, 222
ApeKI GCWGC 2 cut(s) 35, 537
AspA2I CCTAGG 1 cut(s) 82
AspLEI GCGC 2 cut(s) 169, 310
AspS9I GGNCC 1 cut(s) 109
AsuC2I CCSGG 2 cut(s) 312, 435
AsuHPI GGTGA 5 cut(s) 152, 172, 290, 334, 415
AvaII GGWCC 1 cut(s) 109
AvrII CCTAGG 1 cut(s) 82
BaeGI GKGCMC 1 cut(s) 245
BalI TGGCCA 1 cut(s) 56
BbvI GCAGC 2 cut(s) 47, 524
BccI CCATC 1 cut(s) 358
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 32
BcnI CCSGG 2 cut(s) 312, 435
BfaI CTAG 3 cut(s) 83, 122, 149
BfmI CTRYAG 1 cut(s) 532
BfoI RGCGCY 1 cut(s) 311
BfrI CTTAAG 1 cut(s) 139
BglI GCCNNNNNGGC 1 cut(s) 32
BglII AGATCT 1 cut(s) 447
BisI GCNGC 2 cut(s) 36, 538
BlnI CCTAGG 1 cut(s) 82
BlsI GCNGC 2 cut(s) 37, 539
Bme1390I CCNGG 3 cut(s) 32, 312, 435
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 2 cut(s) 111, 316
BmrFI CCNGG 3 cut(s) 32, 312, 435
BmsI GCATC 1 cut(s) 118
Bpu10I CCTNAGC 1 cut(s) 462
BpuMI CCSGG 2 cut(s) 312, 435
Bsa29I ATCGAT 1 cut(s) 504
BsaJI CCNNGG 6 cut(s) 30, 82, 183, 237, 375, 433
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 32
BseCI ATCGAT 1 cut(s) 504
BseDI CCNNGG 6 cut(s) 30, 82, 183, 237, 375, 433
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 138
BseSI GKGCMC 1 cut(s) 245
BseXI GCAGC 2 cut(s) 47, 524
BsgI GTGCAG 1 cut(s) 523
Bsh1236I CGCG 1 cut(s) 377
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 2 cut(s) 56, 224
BshVI ATCGAT 1 cut(s) 504
BsiEI CGRYCG 1 cut(s) 42
BsiSI CCGG 3 cut(s) 17, 311, 435
BslFI GGGAC 2 cut(s) 416, 542
BslI CCNNNNNNNGG 1 cut(s) 239
BsmFI GGGAC 2 cut(s) 416, 542
BsnI GGCC 2 cut(s) 56, 224
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 4 cut(s) 39, 78, 355, 447
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 5 cut(s) 345, 375, 377, 398, 492
BspANI GGCC 2 cut(s) 56, 224
BspDI ATCGAT 1 cut(s) 504
BspFNI CGCG 1 cut(s) 377
BspLI GGNNCC 2 cut(s) 111, 316
BspPI GGATC 1 cut(s) 73
BspTI CTTAAG 1 cut(s) 139
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 6 cut(s) 30, 82, 183, 237, 375, 433
BssMI GATC 4 cut(s) 39, 78, 355, 447
BssT1I CCWWGG 3 cut(s) 82, 183, 237
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 523
BstAFI CTTAAG 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 407
BstDEI CTNAG 1 cut(s) 462
BstDSI CCRYGG 2 cut(s) 183, 375
BstF5I GGATG 1 cut(s) 133
BstFNI CGCG 1 cut(s) 377
BstH2I RGCGCY 1 cut(s) 311
BstHHI GCGC 2 cut(s) 169, 310
BstKTI GATC 4 cut(s) 42, 81, 358, 450
BstMBI GATC 4 cut(s) 39, 78, 355, 447
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 3 cut(s) 32, 314, 467
BstNI CCWGG 1 cut(s) 32
BstNSI RCATGY 1 cut(s) 409
BstSCI CCNGG 3 cut(s) 30, 310, 433
BstSFI CTRYAG 1 cut(s) 532
BstSLI GKGCMC 1 cut(s) 245
BstUI CGCG 1 cut(s) 377
BstV1I GCAGC 2 cut(s) 47, 524
BstX2I RGATCY 1 cut(s) 447
BstYI RGATCY 1 cut(s) 447
Bsu15I ATCGAT 1 cut(s) 504
BsuRI GGCC 2 cut(s) 56, 224
BsuTUI ATCGAT 1 cut(s) 504
BtgI CCRYGG 2 cut(s) 183, 375
BtsCI GGATG 1 cut(s) 133
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 131, 243
Cac8I GCNNGC 1 cut(s) 407
CfoI GCGC 2 cut(s) 169, 310
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 109
Cfr42I CCGCGG 1 cut(s) 378
ClaI ATCGAT 1 cut(s) 504
Csp6I GTAC 1 cut(s) 20
CviAII CATG 3 cut(s) 164, 184, 406
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 1 cut(s) 462
DpnI GATC 4 cut(s) 41, 80, 357, 449
DpnII GATC 4 cut(s) 39, 78, 355, 447
EaeI YGGCCR 1 cut(s) 54
Eco130I CCWWGG 3 cut(s) 82, 183, 237
Eco32I GATATC 1 cut(s) 508
Eco47I GGWCC 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 30
EcoRV GATATC 1 cut(s) 508
EcoT14I CCWWGG 3 cut(s) 82, 183, 237
ErhI CCWWGG 3 cut(s) 82, 183, 237
FaeI CATG 3 cut(s) 167, 187, 409
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FaqI GGGAC 2 cut(s) 416, 542
FatI CATG 3 cut(s) 163, 183, 405
FauI CCCGC 2 cut(s) 382, 391
Fnu4HI GCNGC 2 cut(s) 36, 538
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 2 cut(s) 36, 538
FspBI CTAG 3 cut(s) 83, 122, 149
GlaI GCGC 2 cut(s) 168, 309
GluI GCNGC 2 cut(s) 36, 538
HaeII RGCGCY 1 cut(s) 311
HaeIII GGCC 2 cut(s) 56, 224
HapII CCGG 3 cut(s) 17, 311, 435
HhaI GCGC 2 cut(s) 169, 310
Hin1II CATG 3 cut(s) 167, 187, 409
Hin6I GCGC 2 cut(s) 167, 308
HinP1I GCGC 2 cut(s) 167, 308
HpaII CCGG 3 cut(s) 17, 311, 435
HphI GGTGA 5 cut(s) 152, 172, 290, 334, 415
Hpy166II GTNNAC 1 cut(s) 271
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 1 cut(s) 271
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 3 cut(s) 131, 248, 540
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 314, 467
HpyF3I CTNAG 1 cut(s) 462
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 3 cut(s) 167, 187, 409
HspAI GCGC 2 cut(s) 167, 308
KspI CCGCGG 1 cut(s) 378
Kzo9I GATC 4 cut(s) 39, 78, 355, 447
LmnI GCTCC 1 cut(s) 314
LpnPI CCDG 6 cut(s) 17, 30, 44, 119, 324, 448
Lsp1109I GCAGC 2 cut(s) 47, 524
LweI GCATC 1 cut(s) 118
MaeI CTAG 3 cut(s) 83, 122, 149
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 3 cut(s) 158, 334, 472
MalI GATC 4 cut(s) 41, 80, 357, 449
MboI GATC 4 cut(s) 39, 78, 355, 447
MboII GAAGA 1 cut(s) 457
MflI RGATCY 1 cut(s) 447
MhlI GDGCHC 1 cut(s) 245
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 2 cut(s) 60, 94
MluNI TGGCCA 1 cut(s) 56
MnlI CCTC 5 cut(s) 37, 244, 274, 286, 487
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
MseI TTAA 1 cut(s) 140
MslI CAYNNNNRTG 2 cut(s) 182, 188
Msp20I TGGCCA 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 377
MspCI CTTAAG 1 cut(s) 139
MspI CCGG 3 cut(s) 17, 311, 435
MspR9I CCNGG 3 cut(s) 32, 312, 435
MvaI CCWGG 1 cut(s) 32
MvnI CGCG 1 cut(s) 377
MwoI GCNNNNNNNGC 3 cut(s) 32, 314, 467
NciI CCSGG 2 cut(s) 312, 435
NcoI CCATGG 1 cut(s) 183
NdeII GATC 4 cut(s) 39, 78, 355, 447
NlaIII CATG 3 cut(s) 167, 187, 409
NlaIV GGNNCC 2 cut(s) 111, 316
NmuCI GTSAC 2 cut(s) 158, 472
NspI RCATGY 1 cut(s) 409
PaeI GCATGC 1 cut(s) 409
PkrI GCNGC 2 cut(s) 37, 539
Ple19I CGATCG 1 cut(s) 42
PpuMI RGGWCCY 1 cut(s) 109
PsiI TTATAA 1 cut(s) 71
Psp5II RGGWCCY 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PspN4I GGNNCC 2 cut(s) 111, 316
PspPI GGNCC 1 cut(s) 109
PspPPI RGGWCCY 1 cut(s) 109
PsuI RGATCY 1 cut(s) 447
PvuI CGATCG 1 cut(s) 42
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
RseI CAYNNNNRTG 2 cut(s) 182, 188
SacII CCGCGG 1 cut(s) 378
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 2 cut(s) 36, 538
Sau3AI GATC 4 cut(s) 39, 78, 355, 447
Sau96I GGNCC 1 cut(s) 109
ScrFI CCNGG 3 cut(s) 32, 312, 435
SduI GDGCHC 1 cut(s) 245
SetI ASST 8 cut(s) 150, 222, 276, 297, 306, 468, 479, 539
SfaNI GCATC 1 cut(s) 118
SfcI CTRYAG 1 cut(s) 532
Sfr303I CCGCGG 1 cut(s) 378
SgrBI CCGCGG 1 cut(s) 378
SinI GGWCC 1 cut(s) 109
SmiMI CAYNNNNRTG 2 cut(s) 182, 188
SmlI CTYRAG 1 cut(s) 139
SmoI CTYRAG 1 cut(s) 139
SphI GCATGC 1 cut(s) 409
Sse9I AATT 2 cut(s) 60, 94
SsiI CCGC 5 cut(s) 345, 375, 377, 398, 492
SspMI CTAG 3 cut(s) 83, 122, 149
StyD4I CCNGG 3 cut(s) 30, 310, 433
StyI CCWWGG 3 cut(s) 82, 183, 237
TaaI ACNGT 1 cut(s) 523
TaiI ACGT 1 cut(s) 276
TaqI TCGA 1 cut(s) 504
TasI AATT 2 cut(s) 60, 94
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TscAI CASTG 2 cut(s) 138, 250
TseFI GTSAC 2 cut(s) 158, 472
TseI GCWGC 2 cut(s) 35, 537
Tsp45I GTSAC 2 cut(s) 158, 472
TspGWI ACGGA 1 cut(s) 500
TspRI CASTG 2 cut(s) 138, 250
Vha464I CTTAAG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 109
XceI RCATGY 1 cut(s) 409
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
XmaJI CCTAGG 1 cut(s) 82
XspI CTAG 3 cut(s) 83, 122, 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.