Prupe.6G299400_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0022398
Physical Location & Seq
Reverse (-)
27244353 .. 27245676
1324 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G299400.1

Sequence Viewer

Length: 837 bp
ATGGAGGAAAAGAGGGAGGAAGGGATCATGAAGAAACTAGGAAAGCCTGTACCCATAGCCGCTGCGGTGGTTGGGGTTCTTGTGATCACAGCATTCATAATAACGGTGATCCTATCGGTTACAGTTTACAGAGGAAAGGACCCCATAACCATGGTGGATGGGGTGGTCTTAAGGGACCTGCACATTTCTCACAAAGTGCCTAAACTCACCGTAGATTTAAATCTCTCTGTGAAGAACCCCAACAAGGAGGCCTTCAGGCCCACCAAAGGCACTGCACTCTTGGTCTATAGGGGTGCGCCGATGGGCGAGGCCGTTATAGACACAGGAGAGATAGCCGCCGGCACCACTAAATCCATGACTGTCACGCTCTCCATTATGCCTGAGCGTTTGCAGGGGAATCCCGAGATTTATATGGAGGTGAAGGCGGGTATGGTGCCCTTCAACACTTACACCAAAATCTCCGGCAAAGTGAAGGTGTTCAACATGGTTAAGGTCAATGTGATCTCCACCGGCTTATGCGGTTTTGCTGTTGATGTCAAGAGCAAGACTGAATGCTTTGGACACCTGCGGAACATATTGGCTCTGAATCCTCAAGAACCAGATGAGGAGTTCTTGTTGTCTGCAATGGAAGCAGATTTTAAATGTAAATGTACAGAGGAGGAGCACTCAAAAGGTGCAGAAAATTTGACCCTTGAAGATCAGACAATGGGGCTACTCAGTCTTGAATGGTGCTTAGAGATGGAACCTTCTAAAATTCACTTGAAAGACTGGACTGTGCGACTAATTAATCACAATTTTCAGCATCTTGAATTACTCGATATTGAGCTGTTTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

279

Amino Acids

30.85

Weight (kDa)

5.86

Isoelectric Point (pI)

30.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022398)

Species Orthologous Gene IDs
malus_domestica MD04G1179400.v1.1 MD12G1194500.v1.1
prunus_persica Prupe.6G299300_v2.0.a1 Prupe.6G299400_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 573
Acc36I ACCTGC 2 cut(s) 186, 573
AccB1I GGYRCC 2 cut(s) 341, 433
AciI CCGC 6 cut(s) 60, 65, 336, 425, 519, 568
AclWI GGATC 2 cut(s) 32, 103
AcsI RAATTY 2 cut(s) 682, 753
AcuI CTGAAG 1 cut(s) 238
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 2 cut(s) 51, 652
AfiI CCNNNNNNNGG 2 cut(s) 244, 266
AflII CTTAAG 1 cut(s) 169
AgsI TTSAA 6 cut(s) 442, 481, 695, 725, 763, 809
AluBI AGCT 1 cut(s) 826
AluI AGCT 1 cut(s) 826
Alw21I GWGCWC 1 cut(s) 666
AlwI GGATC 2 cut(s) 32, 103
Ama87I CYCGRG 1 cut(s) 401
AoxI GGCC 3 cut(s) 249, 257, 309
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 2 cut(s) 682, 753
AseI ATTAAT 1 cut(s) 786
Asp700I GAANNNNTTC 1 cut(s) 476
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 3 cut(s) 139, 175, 258
AsuHPI GGTGA 3 cut(s) 118, 199, 430
AvaI CYCGRG 1 cut(s) 401
AvaII GGWCC 2 cut(s) 139, 175
BaeGI GKGCMC 1 cut(s) 438
BanI GGYRCC 2 cut(s) 341, 433
Bbv12I GWGCWC 1 cut(s) 666
BbvI GCAGC 1 cut(s) 49
BccI CCATC 3 cut(s) 152, 295, 733
BceAI ACGGC 1 cut(s) 296
BclI TGATCA 1 cut(s) 84
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 286
BfrI CTTAAG 1 cut(s) 169
BfuAI ACCTGC 2 cut(s) 186, 573
BisI GCNGC 3 cut(s) 60, 63, 336
BlsI GCNGC 3 cut(s) 61, 64, 337
Bme18I GGWCC 2 cut(s) 139, 175
BmeT110I CYCGRG 1 cut(s) 401
BmgT120I GGNCC 3 cut(s) 139, 175, 258
BmiI GGNNCC 5 cut(s) 141, 176, 343, 435, 744
BmsI GCATC 1 cut(s) 811
BplI GAGNNNNNCTC 2 cut(s) 650, 682
Bpu10I CCTNAGC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 576
BsaBI GATNNNNATC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 599, 629
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 266
Bse118I RCCGGY 2 cut(s) 338, 509
Bse1I ACTGG 1 cut(s) 773
Bse3DI GCAATG 1 cut(s) 630
Bse8I GATNNNNATC 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 163
BseJI GATNNNNATC 1 cut(s) 219
BseLI CCNNNNNNNGG 2 cut(s) 244, 266
BseMI GCAATG 1 cut(s) 630
BseMII CTCAG 2 cut(s) 372, 730
BseNI ACTGG 1 cut(s) 773
BseRI GAGGAG 3 cut(s) 620, 671, 674
BseSI GKGCMC 1 cut(s) 438
BseXI GCAGC 1 cut(s) 49
BsgI GTGCAG 3 cut(s) 164, 258, 696
BshFI GGCC 3 cut(s) 251, 259, 311
BshNI GGYRCC 2 cut(s) 341, 433
BsiHKAI GWGCWC 1 cut(s) 666
BsiHKCI CYCGRG 1 cut(s) 401
BsiSI CCGG 3 cut(s) 339, 462, 510
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 2 cut(s) 244, 266
BsmFI GGGAC 1 cut(s) 188
BsmI GAATGC 2 cut(s) 92, 557
BsnI GGCC 3 cut(s) 251, 259, 311
BsoBI CYCGRG 1 cut(s) 401
Bsp1286I GDGCHC 2 cut(s) 438, 666
Bsp1407I TGTACA 1 cut(s) 650
Bsp143I GATC 5 cut(s) 24, 84, 108, 501, 697
Bsp19I CCATGG 1 cut(s) 150
BspACI CCGC 6 cut(s) 60, 65, 336, 425, 519, 568
BspANI GGCC 3 cut(s) 251, 259, 311
BspCNI CTCAG 2 cut(s) 373, 729
BspHI TCATGA 1 cut(s) 27
BspLI GGNNCC 5 cut(s) 141, 176, 343, 435, 744
BspMI ACCTGC 2 cut(s) 186, 573
BspPI GGATC 2 cut(s) 32, 103
BspT107I GGYRCC 2 cut(s) 341, 433
BspTI CTTAAG 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 630
BsrFI RCCGGY 2 cut(s) 338, 509
BsrGI TGTACA 1 cut(s) 650
BsrI ACTGG 1 cut(s) 773
BssAI RCCGGY 2 cut(s) 338, 509
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 5 cut(s) 24, 84, 108, 501, 697
BssT1I CCWWGG 1 cut(s) 150
Bst4CI ACNGT 5 cut(s) 106, 124, 211, 361, 775
BstAFI CTTAAG 1 cut(s) 169
BstAUI TGTACA 1 cut(s) 650
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 3 cut(s) 381, 716, 733
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 163
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 5 cut(s) 27, 87, 111, 504, 700
BstMBI GATC 5 cut(s) 24, 84, 108, 501, 697
BstMWI GCNNNNNNNGC 1 cut(s) 629
BstSFI CTRYAG 1 cut(s) 286
BstSLI GKGCMC 1 cut(s) 438
BstV1I GCAGC 1 cut(s) 49
BstXI CCANNNNNNTGG 1 cut(s) 151
BsuRI GGCC 3 cut(s) 251, 259, 311
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 163
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 270
BveI ACCTGC 2 cut(s) 186, 573
Cac8I GCNNGC 1 cut(s) 340
CciI TCATGA 1 cut(s) 27
CfoI GCGC 1 cut(s) 298
Cfr10I RCCGGY 2 cut(s) 338, 509
Cfr13I GGNCC 3 cut(s) 139, 175, 258
Csp6I GTAC 2 cut(s) 50, 651
CviAII CATG 4 cut(s) 28, 151, 355, 484
CviQI GTAC 2 cut(s) 50, 651
DdeI CTNAG 3 cut(s) 381, 716, 733
DpnI GATC 5 cut(s) 26, 86, 110, 503, 699
DpnII GATC 5 cut(s) 24, 84, 108, 501, 697
DraI TTTAAA 2 cut(s) 219, 640
DraIII CACNNNGTG 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 150
Eco147I AGGCCT 1 cut(s) 251
Eco47I GGWCC 2 cut(s) 139, 175
Eco57I CTGAAG 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 401
EcoO109I RGGNCCY 2 cut(s) 139, 175
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 4 cut(s) 31, 154, 358, 487
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FaqI GGGAC 1 cut(s) 188
FatI CATG 4 cut(s) 27, 150, 354, 483
FauI CCCGC 1 cut(s) 418
FbaI TGATCA 1 cut(s) 84
Fnu4HI GCNGC 3 cut(s) 60, 63, 336
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 3 cut(s) 60, 63, 336
FspBI CTAG 1 cut(s) 38
GlaI GCGC 1 cut(s) 297
GluI GCNGC 3 cut(s) 60, 63, 336
HaeIII GGCC 3 cut(s) 251, 259, 311
HapII CCGG 3 cut(s) 339, 462, 510
HhaI GCGC 1 cut(s) 298
Hin1II CATG 4 cut(s) 31, 154, 358, 487
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HinfI GANTC 2 cut(s) 397, 586
HpaII CCGG 3 cut(s) 339, 462, 510
HphI GGTGA 3 cut(s) 118, 199, 430
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 585, 702
Hpy188III TCNNGA 6 cut(s) 28, 401, 538, 593, 722, 806
Hpy8I GTNNAC 1 cut(s) 127
HpyAV CCTTC 6 cut(s) 14, 262, 415, 448, 466, 756
HpyCH4III ACNGT 5 cut(s) 106, 124, 211, 361, 775
HpyCH4V TGCA 5 cut(s) 181, 275, 391, 623, 677
HpyF10VI GCNNNNNNNGC 1 cut(s) 629
HpyF3I CTNAG 3 cut(s) 381, 716, 733
Hsp92II CATG 4 cut(s) 31, 154, 358, 487
HspAI GCGC 1 cut(s) 296
KroI GCCGGC 1 cut(s) 338
KroNI GCCGGC 1 cut(s) 340
Ksp22I TGATCA 1 cut(s) 84
Kzo9I GATC 5 cut(s) 24, 84, 108, 501, 697
LmnI GCTCC 1 cut(s) 661
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 811
MaeI CTAG 1 cut(s) 38
MaeIII GTNAC 2 cut(s) 118, 361
MalI GATC 5 cut(s) 26, 86, 110, 503, 699
MboI GATC 5 cut(s) 24, 84, 108, 501, 697
MboII GAAGA 3 cut(s) 43, 244, 707
MhlI GDGCHC 2 cut(s) 438, 666
MluCI AATT 5 cut(s) 682, 753, 783, 793, 809
MroNI GCCGGC 1 cut(s) 338
MroXI GAANNNNTTC 1 cut(s) 476
MseI TTAA 5 cut(s) 170, 218, 489, 639, 786
MslI CAYNNNNRTG 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 62
MspCI CTTAAG 1 cut(s) 169
MspI CCGG 3 cut(s) 339, 462, 510
Mva1269I GAATGC 2 cut(s) 92, 557
MwoI GCNNNNNNNGC 1 cut(s) 629
NaeI GCCGGC 1 cut(s) 340
NcoI CCATGG 1 cut(s) 150
NdeII GATC 5 cut(s) 24, 84, 108, 501, 697
NgoMIV GCCGGC 1 cut(s) 338
NlaIII CATG 4 cut(s) 31, 154, 358, 487
NlaIV GGNNCC 5 cut(s) 141, 176, 343, 435, 744
NmuCI GTSAC 1 cut(s) 361
PagI TCATGA 1 cut(s) 27
PaqCI CACCTGC 1 cut(s) 573
PceI AGGCCT 1 cut(s) 251
PctI GAATGC 2 cut(s) 92, 557
PdiI GCCGGC 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 476
PfeI GAWTC 2 cut(s) 397, 586
PkrI GCNGC 3 cut(s) 61, 64, 337
PpuMI RGGWCCY 2 cut(s) 139, 175
PshBI ATTAAT 1 cut(s) 786
Psp5II RGGWCCY 2 cut(s) 139, 175
PspN4I GGNNCC 5 cut(s) 141, 176, 343, 435, 744
PspPI GGNCC 3 cut(s) 139, 175, 258
PspPPI RGGWCCY 2 cut(s) 139, 175
RsaI GTAC 2 cut(s) 51, 652
RsaNI GTAC 2 cut(s) 50, 651
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 5 cut(s) 170, 218, 489, 639, 786
SatI GCNGC 3 cut(s) 60, 63, 336
Sau3AI GATC 5 cut(s) 24, 84, 108, 501, 697
Sau96I GGNCC 3 cut(s) 139, 175, 258
SduI GDGCHC 2 cut(s) 438, 666
SetI ASST 8 cut(s) 180, 420, 477, 495, 567, 676, 748, 828
SfaNI GCATC 1 cut(s) 811
SfcI CTRYAG 1 cut(s) 286
SinI GGWCC 2 cut(s) 139, 175
SmiI ATTTAAAT 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 149
SmlI CTYRAG 2 cut(s) 169, 591
SmoI CTYRAG 2 cut(s) 169, 591
Sse9I AATT 5 cut(s) 682, 753, 783, 793, 809
SseBI AGGCCT 1 cut(s) 251
SsiI CCGC 6 cut(s) 60, 65, 336, 425, 519, 568
SspMI CTAG 1 cut(s) 38
StuI AGGCCT 1 cut(s) 251
StyI CCWWGG 1 cut(s) 150
SwaI ATTTAAAT 1 cut(s) 219
TaaI ACNGT 5 cut(s) 106, 124, 211, 361, 775
TaqI TCGA 1 cut(s) 816
TasI AATT 5 cut(s) 682, 753, 783, 793, 809
TatI WGTACW 1 cut(s) 650
TauI GCSGC 2 cut(s) 62, 338
TfiI GAWTC 2 cut(s) 397, 586
Tru1I TTAA 5 cut(s) 170, 218, 489, 639, 786
Tru9I TTAA 5 cut(s) 170, 218, 489, 639, 786
TscAI CASTG 1 cut(s) 277
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 2 cut(s) 44, 85
TspRI CASTG 1 cut(s) 277
Vha464I CTTAAG 1 cut(s) 169
VpaK11BI GGWCC 2 cut(s) 139, 175
VspI ATTAAT 1 cut(s) 786
XapI RAATTY 2 cut(s) 682, 753
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XmnI GAANNNNTTC 1 cut(s) 476
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.