Prupe.6G299300_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0022398
Physical Location & Seq
Reverse (-)
27242957 .. 27243505
549 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G299300.1

Sequence Viewer

Length: 549 bp
ATGAAGAAACTAGGAGGAAAGCCCCAATACATCGCCATGGCGATGGCCGCGGGTCTTGTGATTTCAGTAGCACTTATAATGGGGATTCTATCGTTGACAGCGTACAGAGGAAAGGACCCCATAACCATGCTGAATGGGGTGGTCTTAAGGGACCTGCAAATTTCTCAGGATGTGCCTAAACTCACTATGGATTTGAATCTCTCTGTGAAGAACCCCAACAAGTATGCCTTCAGGCCCACAAAAAACACTGCATTCTTGCTCTATAGAGGTGTTATGGTCGGGGAGGCGGTCATAGAAGTCGGGGAGATAGCCCCCGGCGCCACTAAATCCACGACCGTCACGCTCACCATTTTGGCTGAGCGTATGCAGGGGAACCCCGCCATTCATATGGACGTGGCAGGGGGTATGGTGCCCTTCAACACTTACACCAAAATCTCCGGCAAAGTGAAGGTTTTCCGCCTGGTCGGTGTCACTGTGATCTCCACCGGCTTATGTGGTTTAGATGTCGATGTCCAGAGCAAGACTATTGGGGACCCCAAGTGCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

183

Amino Acids

19.36

Weight (kDa)

9.6

Isoelectric Point (pI)

19.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022398)

Species Orthologous Gene IDs
malus_domestica MD04G1179400.v1.1 MD12G1194500.v1.1
prunus_persica Prupe.6G299300_v2.0.a1 Prupe.6G299400_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 77
Acc16I TGCGCA 1 cut(s) 544
Acc36I ACCTGC 1 cut(s) 162
AccB1I GGYRCC 2 cut(s) 317, 409
AccII CGCG 1 cut(s) 50
AciI CCGC 5 cut(s) 48, 50, 287, 378, 457
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 214
AcyI GRCGYC 1 cut(s) 318
AfaI GTAC 1 cut(s) 104
AflII CTTAAG 1 cut(s) 145
AgsI TTSAA 2 cut(s) 196, 418
AjiI CACGTC 1 cut(s) 394
AjnI CCWGG 1 cut(s) 459
AoxI GGCC 2 cut(s) 45, 233
ApoI RAATTY 1 cut(s) 159
Asp700I GAANNNNTTC 1 cut(s) 452
AspLEI GCGC 2 cut(s) 320, 545
AspS9I GGNCC 4 cut(s) 115, 151, 234, 532
AsuC2I CCSGG 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 337
AvaII GGWCC 3 cut(s) 115, 151, 532
BaeGI GKGCMC 1 cut(s) 414
BanI GGYRCC 2 cut(s) 317, 409
BccI CCATC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 461
BcnI CCSGG 1 cut(s) 315
BfaI CTAG 1 cut(s) 11
BfmI CTRYAG 1 cut(s) 262
BfoI RGCGCY 1 cut(s) 321
BfrI CTTAAG 1 cut(s) 145
BfuAI ACCTGC 1 cut(s) 162
BisI GCNGC 1 cut(s) 48
BlpI GCTNAGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 2 cut(s) 315, 461
Bme18I GGWCC 3 cut(s) 115, 151, 532
BmgBI CACGTC 1 cut(s) 394
BmgT120I GGNCC 4 cut(s) 115, 151, 234, 532
BmiI GGNNCC 7 cut(s) 117, 152, 319, 374, 411, 533, 534
BmrFI CCNGG 2 cut(s) 315, 461
Bpu1102I GCTNAGC 1 cut(s) 357
BpuMI CCSGG 1 cut(s) 315
BsaBI GATNNNNATC 1 cut(s) 195
BsaHI GRCGYC 1 cut(s) 318
BsaJI CCNNGG 3 cut(s) 36, 48, 313
Bse118I RCCGGY 1 cut(s) 485
Bse8I GATNNNNATC 1 cut(s) 195
BseBI CCWGG 1 cut(s) 461
BseDI CCNNGG 3 cut(s) 36, 48, 313
BseGI GGATG 1 cut(s) 175
BseJI GATNNNNATC 1 cut(s) 195
BseMII CTCAG 2 cut(s) 179, 348
BseSI GKGCMC 1 cut(s) 414
Bsh1236I CGCG 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 336
BshFI GGCC 2 cut(s) 47, 235
BshNI GGYRCC 2 cut(s) 317, 409
BsiEI CGRYCG 1 cut(s) 336
BsiSI CCGG 3 cut(s) 315, 438, 486
BslFI GGGAC 2 cut(s) 164, 545
BsmFI GGGAC 2 cut(s) 164, 545
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 2 cut(s) 47, 235
Bsp1286I GDGCHC 1 cut(s) 414
Bsp143I GATC 1 cut(s) 477
Bsp1720I GCTNAGC 1 cut(s) 357
Bsp19I CCATGG 1 cut(s) 36
BspACI CCGC 5 cut(s) 48, 50, 287, 378, 457
BspANI GGCC 2 cut(s) 47, 235
BspCNI CTCAG 2 cut(s) 178, 349
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 7 cut(s) 117, 152, 319, 374, 411, 533, 534
BspMI ACCTGC 1 cut(s) 162
BspT107I GGYRCC 2 cut(s) 317, 409
BspTI CTTAAG 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 485
BssAI RCCGGY 1 cut(s) 485
BssECI CCNNGG 3 cut(s) 36, 48, 313
BssMI GATC 1 cut(s) 477
BssNI GRCGYC 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 2 cut(s) 337, 475
BstACI GRCGYC 1 cut(s) 318
BstAFI CTTAAG 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 165, 357
BstDSI CCRYGG 2 cut(s) 36, 48
BstF5I GGATG 1 cut(s) 175
BstFNI CGCG 1 cut(s) 50
BstH2I RGCGCY 1 cut(s) 321
BstHHI GCGC 2 cut(s) 320, 545
BstKTI GATC 1 cut(s) 480
BstMBI GATC 1 cut(s) 477
BstMCI CGRYCG 1 cut(s) 336
BstMWI GCNNNNNNNGC 2 cut(s) 47, 317
BstNI CCWGG 1 cut(s) 461
BstSCI CCNGG 2 cut(s) 313, 459
BstSFI CTRYAG 1 cut(s) 262
BstSLI GKGCMC 1 cut(s) 414
BstUI CGCG 1 cut(s) 50
BstXI CCANNNNNNTGG 2 cut(s) 43, 388
BsuRI GGCC 2 cut(s) 47, 235
BtgI CCRYGG 2 cut(s) 36, 48
BtgZI GCGATG 2 cut(s) 16, 56
BtrI CACGTC 1 cut(s) 394
BtsCI GGATG 1 cut(s) 175
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 2 cut(s) 246, 471
BveI ACCTGC 1 cut(s) 162
CfoI GCGC 2 cut(s) 320, 545
Cfr10I RCCGGY 1 cut(s) 485
Cfr13I GGNCC 4 cut(s) 115, 151, 234, 532
Cfr42I CCGCGG 1 cut(s) 51
Csp6I GTAC 1 cut(s) 103
CviAII CATG 2 cut(s) 37, 127
CviJI RGCY 6 cut(s) 22, 47, 235, 311, 356, 489
CviKI_1 RGCY 6 cut(s) 22, 47, 235, 311, 356, 489
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 2 cut(s) 165, 357
DinI GGCGCC 1 cut(s) 319
DpnI GATC 1 cut(s) 479
DpnII GATC 1 cut(s) 477
EaeI YGGCCR 1 cut(s) 45
EciI GGCGGA 1 cut(s) 446
Eco130I CCWWGG 1 cut(s) 36
Eco47I GGWCC 3 cut(s) 115, 151, 532
Eco57I CTGAAG 1 cut(s) 214
EcoO109I RGGNCCY 3 cut(s) 115, 151, 532
EcoRII CCWGG 1 cut(s) 459
EcoT14I CCWWGG 1 cut(s) 36
EgeI GGCGCC 1 cut(s) 319
EheI GGCGCC 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 2 cut(s) 40, 130
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FaqI GGGAC 2 cut(s) 164, 545
FatI CATG 2 cut(s) 36, 126
FauI CCCGC 2 cut(s) 43, 385
FauNDI CATATG 1 cut(s) 387
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 48
FspAI RTGCGCAY 1 cut(s) 544
FspBI CTAG 1 cut(s) 11
FspI TGCGCA 1 cut(s) 544
GlaI GCGC 2 cut(s) 319, 544
GluI GCNGC 1 cut(s) 48
HaeII RGCGCY 1 cut(s) 321
HaeIII GGCC 2 cut(s) 47, 235
HapII CCGG 3 cut(s) 315, 438, 486
HhaI GCGC 2 cut(s) 320, 545
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 2 cut(s) 40, 130
Hin6I GCGC 2 cut(s) 318, 543
HinP1I GCGC 2 cut(s) 318, 543
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HinfI GANTC 2 cut(s) 85, 196
HpaII CCGG 3 cut(s) 315, 438, 486
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 1 cut(s) 96
Hpy188III TCNNGA 2 cut(s) 167, 514
Hpy8I GTNNAC 1 cut(s) 96
HpyAV CCTTC 3 cut(s) 238, 424, 442
HpyCH4III ACNGT 2 cut(s) 337, 475
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 3 cut(s) 157, 251, 367
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 317
HpyF3I CTNAG 2 cut(s) 165, 357
HpySE526I ACGT 1 cut(s) 393
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 2 cut(s) 40, 130
HspAI GCGC 2 cut(s) 318, 543
KasI GGCGCC 1 cut(s) 317
KflI GGGWCCC 1 cut(s) 532
KspI CCGCGG 1 cut(s) 51
Kzo9I GATC 1 cut(s) 477
MaeI CTAG 1 cut(s) 11
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 2 cut(s) 337, 469
MalI GATC 1 cut(s) 479
MboI GATC 1 cut(s) 477
MboII GAAGA 2 cut(s) 16, 220
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 1 cut(s) 159
Mly113I GGCGCC 1 cut(s) 318
MnlI CCTC 4 cut(s) 8, 101, 260, 277
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 1 cut(s) 146
MslI CAYNNNNRTG 4 cut(s) 35, 41, 125, 386
MspA1I CMGCKG 1 cut(s) 50
MspCI CTTAAG 1 cut(s) 145
MspI CCGG 3 cut(s) 315, 438, 486
MspR9I CCNGG 2 cut(s) 315, 461
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 1 cut(s) 461
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 47, 317
NarI GGCGCC 1 cut(s) 318
NciI CCSGG 1 cut(s) 315
NcoI CCATGG 1 cut(s) 36
NdeI CATATG 1 cut(s) 387
NdeII GATC 1 cut(s) 477
NlaIII CATG 2 cut(s) 40, 130
NlaIV GGNNCC 7 cut(s) 117, 152, 319, 374, 411, 533, 534
NmuCI GTSAC 2 cut(s) 337, 469
NsbI TGCGCA 1 cut(s) 544
PcsI WCGNNNNNNNCGW 1 cut(s) 98
PctI GAATGC 1 cut(s) 251
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 2 cut(s) 85, 196
PkrI GCNGC 1 cut(s) 49
PluTI GGCGCC 1 cut(s) 321
PpuMI RGGWCCY 3 cut(s) 115, 151, 532
PsiI TTATAA 1 cut(s) 77
Psp5II RGGWCCY 3 cut(s) 115, 151, 532
Psp6I CCWGG 1 cut(s) 459
PspGI CCWGG 1 cut(s) 459
PspN4I GGNNCC 7 cut(s) 117, 152, 319, 374, 411, 533, 534
PspPI GGNCC 4 cut(s) 115, 151, 234, 532
PspPPI RGGWCCY 3 cut(s) 115, 151, 532
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
RseI CAYNNNNRTG 4 cut(s) 35, 41, 125, 386
SacII CCGCGG 1 cut(s) 51
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 477
Sau96I GGNCC 4 cut(s) 115, 151, 234, 532
ScrFI CCNGG 2 cut(s) 315, 461
SduI GDGCHC 1 cut(s) 414
SetI ASST 4 cut(s) 156, 271, 396, 453
SfcI CTRYAG 1 cut(s) 262
SfoI GGCGCC 1 cut(s) 319
Sfr303I CCGCGG 1 cut(s) 51
SgrBI CCGCGG 1 cut(s) 51
SinI GGWCC 3 cut(s) 115, 151, 532
SmiMI CAYNNNNRTG 4 cut(s) 35, 41, 125, 386
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
Sse9I AATT 1 cut(s) 159
SsiI CCGC 5 cut(s) 48, 50, 287, 378, 457
SspDI GGCGCC 1 cut(s) 317
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 2 cut(s) 313, 459
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 2 cut(s) 337, 475
TaiI ACGT 1 cut(s) 396
TaqI TCGA 1 cut(s) 507
TasI AATT 1 cut(s) 159
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 2 cut(s) 85, 196
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TscAI CASTG 2 cut(s) 253, 478
TseFI GTSAC 2 cut(s) 337, 469
Tsp45I GTSAC 2 cut(s) 337, 469
TspDTI ATGAA 2 cut(s) 17, 374
TspRI CASTG 2 cut(s) 253, 478
Vha464I CTTAAG 1 cut(s) 145
VpaK11BI GGWCC 3 cut(s) 115, 151, 532
XapI RAATTY 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.