MD04G1206200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0018452
Physical Location & Seq
Forward (+)
29212309 .. 29214776
2468 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1206200.v1.1.491

Sequence Viewer

Length: 252 bp
ATGTTCATCACAAGGAATCAAGCCATTGGCCTTCTGTTGATTTTCTTGGGCATCTCCGGCTTGCGCGACGACGGCGTATCCGGAGCTAGATGTTTAAACGAGAAGGTGGAGAATCTGGGGAAGCCTCGAGTTTTCAACTCAATTGGAGCAGATGAAGGTTTTTTTGCCACAAGCAACAGAAAAGTGCCGTCTTCTCCTGACCCATTCCACAATAGATCTTTGGAATCGTCTGAGTTGAAGCGATCTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.09

Weight (kDa)

9.1

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018452)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g05720
malus_domestica MD04G1206200.v1.1
prunus_persica Prupe.6G326900_v2.0.a1
pyrus_communis pycom04g18240 pycom12g20560
rosa_chinensis RchiOBHm_Chr3g0454611
rosa_roxburghii Rroxscaffold_6G00424930
rosa_rugosa Rorug03G0000600
rosa_samantha Rh3AG060500 Rh3DG062200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 250
AccII CGCG 1 cut(s) 66
AccIII TCCGGA 1 cut(s) 80
AgsI TTSAA 2 cut(s) 136, 238
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
Ama87I CYCGRG 1 cut(s) 126
Aor13HI TCCGGA 1 cut(s) 80
AoxI GGCC 1 cut(s) 28
AspLEI GCGC 1 cut(s) 66
AvaI CYCGRG 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 183
BceAI ACGGC 2 cut(s) 88, 172
BciVI GTATCC 1 cut(s) 88
BfaI CTAG 1 cut(s) 87
BfuI GTATCC 1 cut(s) 88
BglII AGATCT 1 cut(s) 215
BmeT110I CYCGRG 1 cut(s) 126
BmsI GCATC 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 80
BseAI TCCGGA 1 cut(s) 80
BseMII CTCAG 1 cut(s) 222
Bsh1236I CGCG 1 cut(s) 66
BshFI GGCC 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 126
BsiSI CCGG 2 cut(s) 57, 81
BsnI GGCC 1 cut(s) 30
BsoBI CYCGRG 1 cut(s) 126
Bsp13I TCCGGA 1 cut(s) 80
Bsp143I GATC 2 cut(s) 215, 242
BspANI GGCC 1 cut(s) 30
BspCNI CTCAG 1 cut(s) 223
BspEI TCCGGA 1 cut(s) 80
BspFNI CGCG 1 cut(s) 66
BssMI GATC 2 cut(s) 215, 242
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 231
BstFNI CGCG 1 cut(s) 66
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 2 cut(s) 218, 245
BstMBI GATC 2 cut(s) 215, 242
BstMWI GCNNNNNNNGC 2 cut(s) 57, 72
BstUI CGCG 1 cut(s) 66
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BsuI GTATCC 1 cut(s) 88
BsuRI GGCC 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 62
CfoI GCGC 1 cut(s) 66
CviJI RGCY 5 cut(s) 23, 30, 60, 86, 124
CviKI_1 RGCY 5 cut(s) 23, 30, 60, 86, 124
DdeI CTNAG 1 cut(s) 231
DpnI GATC 2 cut(s) 217, 244
DpnII GATC 2 cut(s) 215, 242
DraI TTTAAA 1 cut(s) 96
Eco88I CYCGRG 1 cut(s) 126
FaiI YATR 1 cut(s) 250
FspBI CTAG 1 cut(s) 87
GlaI GCGC 1 cut(s) 65
HaeIII GGCC 1 cut(s) 30
HapII CCGG 2 cut(s) 57, 81
HhaI GCGC 1 cut(s) 66
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 3 cut(s) 16, 112, 224
HpaII CCGG 2 cut(s) 57, 81
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 2 cut(s) 81, 197
Hpy99I CGWCG 2 cut(s) 71, 74
HpyAV CCTTC 3 cut(s) 41, 97, 149
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 72
HpyF3I CTNAG 1 cut(s) 231
HspAI GCGC 1 cut(s) 64
Kpn2I TCCGGA 1 cut(s) 80
Kzo9I GATC 2 cut(s) 215, 242
LmnI GCTCC 2 cut(s) 83, 146
LpnPI CCDG 4 cut(s) 70, 94, 101, 210
LweI GCATC 1 cut(s) 60
MaeI CTAG 1 cut(s) 87
MalI GATC 2 cut(s) 217, 244
MboI GATC 2 cut(s) 215, 242
MboII GAAGA 1 cut(s) 183
MfeI CAATTG 1 cut(s) 141
MflI RGATCY 1 cut(s) 215
MluCI AATT 1 cut(s) 141
MnlI CCTC 1 cut(s) 135
MroI TCCGGA 1 cut(s) 80
MseI TTAA 1 cut(s) 95
MspI CCGG 2 cut(s) 57, 81
MssI GTTTAAAC 1 cut(s) 96
MunI CAATTG 1 cut(s) 141
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 57, 72
NdeII GATC 2 cut(s) 215, 242
PaeR7I CTCGAG 1 cut(s) 126
PfeI GAWTC 3 cut(s) 16, 112, 224
PmeI GTTTAAAC 1 cut(s) 96
PsiI TTATAA 1 cut(s) 250
PspXI VCTCGAGB 1 cut(s) 126
PsuI RGATCY 1 cut(s) 215
SaqAI TTAA 1 cut(s) 95
Sau3AI GATC 2 cut(s) 215, 242
SetI ASST 3 cut(s) 88, 108, 160
SfaNI GCATC 1 cut(s) 60
Sfr274I CTCGAG 1 cut(s) 126
SlaI CTCGAG 1 cut(s) 126
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
Sse9I AATT 1 cut(s) 141
SspMI CTAG 1 cut(s) 87
TaqI TCGA 1 cut(s) 127
TasI AATT 1 cut(s) 141
TfiI GAWTC 3 cut(s) 16, 112, 224
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 168
XhoI CTCGAG 1 cut(s) 126
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.