Rorug03G0000600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0018452
Physical Location & Seq
Reverse (-)
106738 .. 107932
1195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0000600.1

Sequence Viewer

Length: 396 bp
ATGTCCTTCCAATACTTGCAATCTTACATTGCGCCTCTTTTCATGAATCCTCCTGAAGTTCATGCTAATGCAGCAGTAACACTTTCTGCTATAACTCGAAATGCCCCATCAGCCCTGCCACCAAGCTTTCTAGCCCAAGGTTTGCAGTTCGTCACAAGGATATTTGATCATGCATTGGAAGATTTGCCTTCAAAGTTTGGCCTTGTGAACTCACTTTCTGTCTGCATATCTTTGTTGGATCCCCAAAGATCAGCAGCTTCTTCACCCTTGTTTCATTCCTTTTGGAGCCAACATATGTATGAGTCTCCAATCCCTATTAATCCAGACACTGTCAGTGCAATGCTCCCAAAACTCGTTCATTTCCCAGCACAAATTTTGAATGTCCATGCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.4

Weight (kDa)

6.25

Isoelectric Point (pI)

56.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018452)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g05720
malus_domestica MD04G1206200.v1.1
prunus_persica Prupe.6G326900_v2.0.a1
pyrus_communis pycom04g18240 pycom12g20560
rosa_chinensis RchiOBHm_Chr3g0454611
rosa_roxburghii Rroxscaffold_6G00424930
rosa_rugosa Rorug03G0000600
rosa_samantha Rh3AG060500 Rh3DG062200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 233, 246
AcsI RAATTY 1 cut(s) 372
AcuI CTGAAG 1 cut(s) 75
AgsI TTSAA 2 cut(s) 192, 379
AluBI AGCT 2 cut(s) 126, 257
AluI AGCT 2 cut(s) 126, 257
Alw26I GTCTC 1 cut(s) 309
AlwI GGATC 2 cut(s) 233, 246
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 2 cut(s) 71, 254
ApoI RAATTY 1 cut(s) 372
AseI ATTAAT 1 cut(s) 318
AspLEI GCGC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 255
BamHI GGATCC 1 cut(s) 238
BbvI GCAGC 2 cut(s) 83, 266
BccI CCATC 1 cut(s) 115
BclI TGATCA 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 309
BfaI CTAG 1 cut(s) 131
BisI GCNGC 2 cut(s) 72, 255
BlsI GCNGC 2 cut(s) 73, 256
BmiI GGNNCC 2 cut(s) 240, 287
BsaJI CCNNGG 1 cut(s) 136
Bse3DI GCAATG 2 cut(s) 27, 345
BseDI CCNNGG 1 cut(s) 136
BseMI GCAATG 2 cut(s) 27, 345
BseXI GCAGC 2 cut(s) 83, 266
BseYI CCCAGC 1 cut(s) 364
BshFI GGCC 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 309
BsnI GGCC 1 cut(s) 201
Bsp143I GATC 3 cut(s) 166, 238, 248
BspANI GGCC 1 cut(s) 201
BspHI TCATGA 1 cut(s) 42
BspLI GGNNCC 2 cut(s) 240, 287
BspPI GGATC 2 cut(s) 233, 246
BsrDI GCAATG 2 cut(s) 27, 345
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 3 cut(s) 166, 238, 248
BssT1I CCWWGG 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 331
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 3 cut(s) 169, 241, 251
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 3 cut(s) 166, 238, 248
BstMWI GCNNNNNNNGC 2 cut(s) 71, 110
BstV1I GCAGC 2 cut(s) 83, 266
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuRI GGCC 1 cut(s) 201
BtsIMutI CAGTG 2 cut(s) 327, 340
CaiI CAGNNNCTG 1 cut(s) 329
CciI TCATGA 1 cut(s) 42
CfoI GCGC 1 cut(s) 34
CviAII CATG 4 cut(s) 43, 62, 170, 386
CviJI RGCY 6 cut(s) 113, 126, 134, 201, 257, 288
CviKI_1 RGCY 6 cut(s) 113, 126, 134, 201, 257, 288
DpnI GATC 3 cut(s) 168, 240, 250
DpnII GATC 3 cut(s) 166, 238, 248
Eco130I CCWWGG 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 4 cut(s) 46, 65, 173, 389
FaiI YATR 9 cut(s) 44, 63, 92, 171, 227, 294, 296, 300, 387
FatI CATG 4 cut(s) 42, 61, 169, 385
FauNDI CATATG 1 cut(s) 294
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 2 cut(s) 72, 255
Fsp4HI GCNGC 2 cut(s) 72, 255
FspBI CTAG 1 cut(s) 131
GlaI GCGC 1 cut(s) 33
GluI GCNGC 2 cut(s) 72, 255
GsaI CCCAGC 1 cut(s) 368
HaeIII GGCC 1 cut(s) 201
HhaI GCGC 1 cut(s) 34
Hin1II CATG 4 cut(s) 46, 65, 173, 389
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HindIII AAGCTT 1 cut(s) 124
HinfI GANTC 2 cut(s) 46, 302
HphI GGTGA 1 cut(s) 255
Hpy166II GTNNAC 1 cut(s) 208
Hpy188III TCNNGA 3 cut(s) 43, 53, 323
Hpy8I GTNNAC 1 cut(s) 208
HpyAV CCTTC 2 cut(s) 16, 198
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4V TGCA 6 cut(s) 19, 71, 145, 173, 225, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 110
Hsp92II CATG 4 cut(s) 46, 65, 173, 389
HspAI GCGC 1 cut(s) 32
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 3 cut(s) 166, 238, 248
LmnI GCTCC 2 cut(s) 285, 348
LpnPI CCDG 4 cut(s) 66, 128, 336, 378
Lsp1109I GCAGC 2 cut(s) 83, 266
MaeI CTAG 1 cut(s) 131
MaeIII GTNAC 2 cut(s) 76, 151
MalI GATC 3 cut(s) 168, 240, 250
MboI GATC 3 cut(s) 166, 238, 248
MboII GAAGA 2 cut(s) 191, 252
MflI RGATCY 1 cut(s) 238
MluCI AATT 1 cut(s) 372
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 2 cut(s) 45, 60
Mph1103I ATGCAT 1 cut(s) 175
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 2 cut(s) 66, 297
MwoI GCNNNNNNNGC 2 cut(s) 71, 110
NdeI CATATG 1 cut(s) 294
NdeII GATC 3 cut(s) 166, 238, 248
NlaIII CATG 4 cut(s) 46, 65, 173, 389
NlaIV GGNNCC 2 cut(s) 240, 287
NmuCI GTSAC 1 cut(s) 151
NsiI ATGCAT 1 cut(s) 175
PagI TCATGA 1 cut(s) 42
PfeI GAWTC 1 cut(s) 46
PflFI GACNNNGTC 1 cut(s) 329
PkrI GCNGC 2 cut(s) 73, 256
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PshBI ATTAAT 1 cut(s) 318
PspFI CCCAGC 1 cut(s) 364
PspN4I GGNNCC 2 cut(s) 240, 287
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 238
PsyI GACNNNGTC 1 cut(s) 329
RseI CAYNNNNRTG 2 cut(s) 66, 297
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 2 cut(s) 72, 255
Sau3AI GATC 3 cut(s) 166, 238, 248
SchI GAGTC 1 cut(s) 311
SetI ASST 3 cut(s) 128, 142, 259
SmiMI CAYNNNNRTG 2 cut(s) 66, 297
Sse9I AATT 1 cut(s) 372
SspMI CTAG 1 cut(s) 131
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 331
TaqI TCGA 1 cut(s) 97
TasI AATT 1 cut(s) 372
TfiI GAWTC 1 cut(s) 46
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 2 cut(s) 334, 340
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 2 cut(s) 71, 254
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 5 cut(s) 31, 50, 59, 263, 347
TspRI CASTG 2 cut(s) 334, 340
Tth111I GACNNNGTC 1 cut(s) 329
VspI ATTAAT 1 cut(s) 318
XapI RAATTY 1 cut(s) 372
XspI CTAG 1 cut(s) 131
Zsp2I ATGCAT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.