MD04G1207800.v1.1

Guanosine nucleotide diphosphate dissociation inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0020392
Physical Location & Seq
Reverse (-)
29285142 .. 29287646
2505 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1207800.v1.1.491

Sequence Viewer

Length: 663 bp
ATGCTCGCCCTCATCTGCTCATCTTGTCTGGTTCACAAGGTTCCAACAACTGACATGGAGGCCCTTAAATCTCCACTCATGGGTCTGTTTGAAAAGCGTCTTGCACGCAAGTTCATCCTATATGTTCAAGATTATAGTGAAACTGATCCTAAAACACATGAGGGAATGGACTTAACAAGAGTGACATCTAGAGATTTCATCTTATGCCTTTCAAGTATGCATATGATTGTTTTTATTTATAGGTCTGCAAGGGACACAATATCCTCTACGTTCTTCTGTATCTTGCTTGAAGGGAAGGTTGGTAAGGTTGCAAGAGTTATTGCCATCATGAGCCACCCAATTCCAAACACCAATGAATCTCACTCAGTGAAAGTTATCCTGCCACAAAAGCAGTCAGATGAGATATACGCAGAGACTGATCATCTCGAGACTGAGCTAAAGCCAGGGATTGACCTTTTAGGGCCTGTTGACGAGATATTTTTTAAGACTTATGACATATATGAACCTGTTAATGAACCAACTTTGGACAATTGCTTTATATCAACTAGTTATGATGCCACAACACACTTTGAGTCCACTGTCTTGGATGTACTCAACATGTACACCTTGATAACAGGGAAGGTTCTTGACCTCAGTGTGGACCTAAGTGAAGCAAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDI

Protein Analysis

221

Amino Acids

24.87

Weight (kDa)

4.98

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 9 - 66 2.6e-19 GDP dissociation inhibitor
GDI PF00996 99 - 133 5.8e-10 GDP dissociation inhibitor
GDI PF00996 137 - 212 2.2e-25 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020392)

Species Orthologous Gene IDs
malus_domestica MD04G1207800.v1.1 MD12G1166400.v1.1
pyrus_communis pycom05g00500 pycom06g10650 pycom16g17470
rosa_multiflora Rmu_co8392277.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 140
AdeI CACNNNGTG 1 cut(s) 367
AfaI GTAC 2 cut(s) 591, 602
AfiI CCNNNNNNNGG 2 cut(s) 80, 637
AflIII ACRYGT 1 cut(s) 597
AgsI TTSAA 4 cut(s) 92, 128, 213, 290
AhlI ACTAGT 1 cut(s) 545
AjnI CCWGG 1 cut(s) 442
AjuI GAANNNNNNNTTGG 2 cut(s) 282, 314
AluBI AGCT 1 cut(s) 436
AluI AGCT 1 cut(s) 436
Alw26I GTCTC 2 cut(s) 407, 422
AlwI GGATC 1 cut(s) 140
AlwNI CAGNNNCTG 1 cut(s) 416
Ama87I CYCGRG 1 cut(s) 425
AoxI GGCC 2 cut(s) 60, 461
AspS9I GGNCC 3 cut(s) 61, 461, 640
AvaI CYCGRG 1 cut(s) 425
AvaII GGWCC 1 cut(s) 640
BccI CCATC 1 cut(s) 332
BciT130I CCWGG 1 cut(s) 444
BclI TGATCA 1 cut(s) 418
BcoDI GTCTC 2 cut(s) 407, 422
BcuI ACTAGT 1 cut(s) 545
BfaI CTAG 2 cut(s) 189, 546
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 1 cut(s) 640
BmeT110I CYCGRG 1 cut(s) 425
BmgT120I GGNCC 3 cut(s) 61, 461, 640
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 1 cut(s) 544
BsaJI CCNNGG 1 cut(s) 443
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 637
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 1 cut(s) 443
BseGI GGATG 2 cut(s) 114, 592
BseLI CCNNNNNNNGG 2 cut(s) 80, 637
BseMII CTCAG 3 cut(s) 378, 423, 646
BshFI GGCC 2 cut(s) 62, 463
BsiHKCI CYCGRG 1 cut(s) 425
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 2 cut(s) 80, 637
BsmAI GTCTC 2 cut(s) 407, 422
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 2 cut(s) 62, 463
BsoBI CYCGRG 1 cut(s) 425
Bsp1407I TGTACA 1 cut(s) 600
Bsp143I GATC 2 cut(s) 145, 418
BspANI GGCC 2 cut(s) 62, 463
BspCNI CTCAG 3 cut(s) 377, 424, 645
BspHI TCATGA 1 cut(s) 327
BspLI GGNNCC 1 cut(s) 42
BspPI GGATC 1 cut(s) 140
BsrGI TGTACA 1 cut(s) 600
BssECI CCNNGG 1 cut(s) 443
BssMI GATC 2 cut(s) 145, 418
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 1 cut(s) 580
BstAUI TGTACA 1 cut(s) 600
BstC8I GCNNGC 2 cut(s) 6, 106
BstDEI CTNAG 4 cut(s) 364, 432, 632, 644
BstF5I GGATG 2 cut(s) 114, 592
BstKTI GATC 2 cut(s) 148, 421
BstMAI GTCTC 2 cut(s) 407, 422
BstMBI GATC 2 cut(s) 145, 418
BstMWI GCNNNNNNNGC 1 cut(s) 388
BstNI CCWGG 1 cut(s) 444
BstNSI RCATGY 1 cut(s) 601
BstSCI CCNGG 1 cut(s) 442
BstXI CCANNNNNNTGG 1 cut(s) 583
BsuRI GGCC 2 cut(s) 62, 463
BtsCI GGATG 2 cut(s) 114, 592
BtsIMutI CAGTG 3 cut(s) 372, 576, 640
Cac8I GCNNGC 2 cut(s) 6, 106
CaiI CAGNNNCTG 1 cut(s) 416
CciI TCATGA 1 cut(s) 327
Cfr13I GGNCC 3 cut(s) 61, 461, 640
CseI GACGC 1 cut(s) 86
Csp6I GTAC 2 cut(s) 590, 601
CviAII CATG 5 cut(s) 55, 79, 158, 328, 598
CviJI RGCY 5 cut(s) 62, 333, 436, 442, 463
CviKI_1 RGCY 5 cut(s) 62, 333, 436, 442, 463
CviQI GTAC 2 cut(s) 590, 601
DdeI CTNAG 4 cut(s) 364, 432, 632, 644
DpnI GATC 2 cut(s) 147, 420
DpnII GATC 2 cut(s) 145, 418
DraIII CACNNNGTG 1 cut(s) 367
Eco47I GGWCC 1 cut(s) 640
Eco88I CYCGRG 1 cut(s) 425
EcoO109I RGGNCCY 2 cut(s) 61, 461
EcoRII CCWGG 1 cut(s) 442
EcoT22I ATGCAT 1 cut(s) 222
FaeI CATG 5 cut(s) 58, 82, 161, 331, 601
FaqI GGGAC 1 cut(s) 266
FatI CATG 5 cut(s) 54, 78, 157, 327, 597
FauNDI CATATG 1 cut(s) 222
FbaI TGATCA 1 cut(s) 418
FokI GGATG 2 cut(s) 101, 599
FspBI CTAG 2 cut(s) 189, 546
HaeIII GGCC 2 cut(s) 62, 463
HgaI GACGC 1 cut(s) 86
Hin1II CATG 5 cut(s) 58, 82, 161, 331, 601
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HinfI GANTC 2 cut(s) 356, 572
Hpy166II GTNNAC 5 cut(s) 34, 469, 576, 603, 640
Hpy188I TCNGA 1 cut(s) 397
Hpy188III TCNNGA 6 cut(s) 128, 189, 328, 425, 427, 626
Hpy8I GTNNAC 5 cut(s) 34, 469, 576, 603, 640
HpyAV CCTTC 3 cut(s) 284, 289, 613
HpyCH4III ACNGT 1 cut(s) 580
HpyCH4IV ACGT 1 cut(s) 269
HpyCH4V TGCA 4 cut(s) 104, 220, 248, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 388
HpyF3I CTNAG 4 cut(s) 364, 432, 632, 644
HpySE526I ACGT 1 cut(s) 269
Hsp92II CATG 5 cut(s) 58, 82, 161, 331, 601
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 2 cut(s) 145, 418
LpnPI CCDG 7 cut(s) 14, 392, 429, 456, 477, 519, 600
LweI GCATC 1 cut(s) 544
MaeI CTAG 2 cut(s) 189, 546
MaeII ACGT 1 cut(s) 269
MaeIII GTNAC 1 cut(s) 181
MalI GATC 2 cut(s) 147, 420
MboI GATC 2 cut(s) 145, 418
MboII GAAGA 1 cut(s) 265
MfeI CAATTG 1 cut(s) 529
MluCI AATT 2 cut(s) 339, 529
MlyI GAGTC 1 cut(s) 581
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 5 cut(s) 20, 52, 154, 274, 641
Mph1103I ATGCAT 1 cut(s) 222
MseI TTAA 4 cut(s) 66, 173, 483, 510
MspR9I CCNGG 1 cut(s) 444
MunI CAATTG 1 cut(s) 529
MvaI CCWGG 1 cut(s) 444
MwoI GCNNNNNNNGC 1 cut(s) 388
NdeI CATATG 1 cut(s) 222
NdeII GATC 2 cut(s) 145, 418
NlaIII CATG 5 cut(s) 58, 82, 161, 331, 601
NlaIV GGNNCC 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 181
NsiI ATGCAT 1 cut(s) 222
NspI RCATGY 1 cut(s) 601
PaeR7I CTCGAG 1 cut(s) 425
PagI TCATGA 1 cut(s) 327
PciI ACATGT 1 cut(s) 597
PfeI GAWTC 1 cut(s) 356
PleI GAGTC 1 cut(s) 580
PpsI GAGTC 1 cut(s) 580
PscI ACATGT 1 cut(s) 597
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 3 cut(s) 61, 461, 640
PstNI CAGNNNCTG 1 cut(s) 416
RsaI GTAC 2 cut(s) 591, 602
RsaNI GTAC 2 cut(s) 590, 601
SaqAI TTAA 4 cut(s) 66, 173, 483, 510
Sau3AI GATC 2 cut(s) 145, 418
Sau96I GGNCC 3 cut(s) 61, 461, 640
SchI GAGTC 1 cut(s) 581
ScrFI CCNGG 1 cut(s) 444
SfaNI GCATC 1 cut(s) 544
Sfr274I CTCGAG 1 cut(s) 425
SinI GGWCC 1 cut(s) 640
SlaI CTCGAG 1 cut(s) 425
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
SpeI ACTAGT 1 cut(s) 545
Sse9I AATT 2 cut(s) 339, 529
SspMI CTAG 2 cut(s) 189, 546
StyD4I CCNGG 1 cut(s) 442
TaaI ACNGT 1 cut(s) 580
TaiI ACGT 1 cut(s) 272
TaqI TCGA 1 cut(s) 426
TasI AATT 2 cut(s) 339, 529
TatI WGTACW 2 cut(s) 589, 600
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 4 cut(s) 66, 173, 483, 510
Tru9I TTAA 4 cut(s) 66, 173, 483, 510
TscAI CASTG 3 cut(s) 372, 583, 640
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 5 cut(s) 103, 187, 369, 516, 528
TspRI CASTG 3 cut(s) 372, 583, 640
VpaK11BI GGWCC 1 cut(s) 640
XbaI TCTAGA 1 cut(s) 188
XceI RCATGY 1 cut(s) 601
XhoI CTCGAG 1 cut(s) 425
XspI CTAG 2 cut(s) 189, 546
Zsp2I ATGCAT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.