Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8392277.1

Orthogroup ID

OG0020392

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 677

Gene Structure 677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8392277.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 337 bp

gtatctcttctgttcctcttactctcacaatgttgctccgaagggaaagtttattgcgtttgtgtcaacagaagcggaaactgataatccacatactgagctaaagccaggaattgaccttttagggcctgttgaagagatattttttgatatttatgacagatatgagccggtcaatgaaccctctttggacaattgctttatatcaactagttatgatgccacaacacactttgagtccactgtcatggatgtactcaacatgtataccttgataacagggaaggttcttgatcttagcgtggacctaagtgctgctagtgctgccgaagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

111

Amino Acids

12.32

Weight (kDa)

4.19

Isoelectric Point (pI)

32.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020392)

Species	Orthologous Gene IDs
malus_domestica	MD04G1207800.v1.1 MD12G1166400.v1.1
pyrus_communis	pycom05g00500 pycom06g10650 pycom16g17470
rosa_multiflora	Rmu_co8392277.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	1 cut(s)	75
AfaI	GTAC	1 cut(s)	256
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	1 cut(s)	135
AhlI	ACTAGT	1 cut(s)	210
AjnI	CCWGG	1 cut(s)	107
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	315, 324
AspS9I	GGNCC	2 cut(s)	126, 305
AvaII	GGWCC	1 cut(s)	305
BbvI	GCAGC	2 cut(s)	302, 311
BciT130I	CCWGG	1 cut(s)	109
BcuI	ACTAGT	1 cut(s)	210
BfaI	CTAG	2 cut(s)	211, 319
BisI	GCNGC	2 cut(s)	316, 325
BlsI	GCNGC	2 cut(s)	317, 326
Bme1390I	CCNGG	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	2 cut(s)	126, 305
BmrFI	CCNGG	1 cut(s)	109
BmsI	GCATC	1 cut(s)	209
Bse118I	RCCGGY	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	109
BseGI	GGATG	1 cut(s)	257
BseMII	CTCAG	1 cut(s)	88
BseXI	GCAGC	2 cut(s)	302, 311
BshFI	GGCC	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	171
BsnI	GGCC	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	293
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	170
BssMI	GATC	1 cut(s)	293
BssNAI	GTATAC	1 cut(s)	268
Bst1107I	GTATAC	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	2 cut(s)	12, 130
BstDEI	CTNAG	3 cut(s)	97, 297, 309
BstF5I	GGATG	1 cut(s)	257
BstKTI	GATC	1 cut(s)	296
BstMBI	GATC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	2 cut(s)	321, 324
BstNI	CCWGG	1 cut(s)	109
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	302, 311
BstXI	CCANNNNNNTGG	1 cut(s)	248
BstZ17I	GTATAC	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	257
BtsIMutI	CAGTG	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	2 cut(s)	126, 305
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	2 cut(s)	248, 263
CviJI	RGCY	4 cut(s)	101, 107, 128, 170
CviKI_1	RGCY	4 cut(s)	101, 107, 128, 170
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	3 cut(s)	97, 297, 309
DpnI	GATC	1 cut(s)	295
DpnII	GATC	1 cut(s)	293
Eam1104I	CTCTTC	2 cut(s)	12, 130
EarI	CTCTTC	2 cut(s)	12, 130
Eco47I	GGWCC	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	107
FaeI	CATG	2 cut(s)	251, 266
FaiI	YATR	8 cut(s)	94, 157, 166, 204, 217, 249, 264, 268
FatI	CATG	2 cut(s)	247, 262
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	2 cut(s)	316, 325
FokI	GGATG	1 cut(s)	264
Fsp4HI	GCNGC	2 cut(s)	316, 325
FspBI	CTAG	2 cut(s)	211, 319
GluI	GCNGC	2 cut(s)	316, 325
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	1 cut(s)	171
Hin1II	CATG	2 cut(s)	251, 266
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	237
HpaII	CCGG	1 cut(s)	171
Hpy166II	GTNNAC	4 cut(s)	67, 241, 268, 305
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	291
Hpy8I	GTNNAC	4 cut(s)	67, 241, 268, 305
HpyAV	CCTTC	2 cut(s)	35, 278
HpyCH4III	ACNGT	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	321, 324
HpyF3I	CTNAG	3 cut(s)	97, 297, 309
Hsp92II	CATG	2 cut(s)	251, 266
Kzo9I	GATC	1 cut(s)	293
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	5 cut(s)	94, 121, 142, 184, 265
Lsp1109I	GCAGC	2 cut(s)	302, 311
LweI	GCATC	1 cut(s)	209
MaeI	CTAG	2 cut(s)	211, 319
MalI	GATC	1 cut(s)	295
MboI	GATC	1 cut(s)	293
MboII	GAAGA	1 cut(s)	147
MfeI	CAATTG	1 cut(s)	194
MluCI	AATT	2 cut(s)	112, 194
MlyI	GAGTC	1 cut(s)	246
MnlI	CCTC	2 cut(s)	26, 194
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	109
MunI	CAATTG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	109
MwoI	GCNNNNNNNGC	2 cut(s)	321, 324
NdeII	GATC	1 cut(s)	293
NlaIII	CATG	2 cut(s)	251, 266
NspI	RCATGY	1 cut(s)	266
PciI	ACATGT	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	317, 326
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PscI	ACATGT	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	107
PspPI	GGNCC	2 cut(s)	126, 305
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
RseI	CAYNNNNRTG	1 cut(s)	246
SatI	GCNGC	2 cut(s)	316, 325
Sau3AI	GATC	1 cut(s)	293
Sau96I	GGNCC	2 cut(s)	126, 305
SchI	GAGTC	1 cut(s)	246
ScrFI	CCNGG	1 cut(s)	109
SetI	ASST	5 cut(s)	103, 121, 273, 289, 310
SfaNI	GCATC	1 cut(s)	209
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	246
SpeI	ACTAGT	1 cut(s)	210
Sse9I	AATT	2 cut(s)	112, 194
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	2 cut(s)	211, 319
StyD4I	CCNGG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	245
TasI	AATT	2 cut(s)	112, 194
TatI	WGTACW	1 cut(s)	254
TscAI	CASTG	1 cut(s)	248
TseI	GCWGC	2 cut(s)	315, 324
TspDTI	ATGAA	1 cut(s)	193
TspRI	CASTG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	305
XceI	RCATGY	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	2 cut(s)	211, 319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.